prot_H-elongata_contig57991.13271.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57991.13271.1
Unique Nameprot_H-elongata_contig57991.13271.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length43
Homology
BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A6H5JTL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.030e-14
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    3 IGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 43
            +G LA SCE +IVGLLQLFT+C+I+GWVWSI WGWEL+EVS
Sbjct:   40 VGALACSCETLIVGLLQLFTSCIIIGWVWSIWWGWELLEVS 80          
BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A6H5K3J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J7_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.120e-6
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    4 GLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELME 41
            G+  F  + V+VG+LQ+ TA +++GWVWSI+WGWEL +
Sbjct:   21 GICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 58          
BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: A0A6H5JZT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.570e-6
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    4 GLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELME 41
            G+  F  + V+VG+LQ+ TA +++GWVWSI+WGWEL +
Sbjct:   36 GICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 73          
BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Match: D7FIX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIX6_ECTSI)

HSP 1 Score: 47.4 bits (111), Expect = 9.620e-6
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    4 GLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS 43
            G L    + +  G+LQL T  L+VGWVWS+MWGWEL  ++
Sbjct:   38 GFLTCKLKSIFTGILQLVTTSLVVGWVWSVMWGWELWTLA 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57991.13271.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JTL1_9PHAE2.030e-1475.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J7_9PHAE1.120e-652.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZT6_9PHAE1.570e-652.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX6_ECTSI9.620e-650.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026673SPEC3/StumPFAMPF15795Spec3coord: 10..43
e-value: 1.4E-7
score: 32.0
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..37
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57991contigH-elongata_contig57991:2322..2450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57991.13271.1mRNA_H-elongata_contig57991.13271.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57991 2310..2450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57991.13271.1 ID=prot_H-elongata_contig57991.13271.1|Name=mRNA_H-elongata_contig57991.13271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MLIGLLAFSCEIVIVGLLQLFTACLIVGWVWSIMWGWELMEVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026673SPEC3/Stum