mRNA_H-elongata_contig57924.13266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57924.13266.1
Unique NamemRNA_H-elongata_contig57924.13266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: D8LDX4_ECTSI (Fumarate hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX4_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 9.160e-109
Identity = 168/196 (85.71%), Postives = 178/196 (90.82%), Query Frame = 1
Query:    4 GYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            GYD++IAALI+EET LPFVTA NKFEALA HDSIVEASGALNT+ACSLMKIANDIRFLGSGPRCGLGEL+LPENEPG          SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVM ANLLSSMRLLGD C+SFA+RCVSG  ANR+RIQEIMS+SLMLVTALNPKIGYDNASKV +
Sbjct:  258 GYDEEIAALIAEETNLPFVTAPNKFEALAGHDSIVEASGALNTLACSLMKIANDIRFLGSGPRCGLGELSLPENEPG----------SSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMVANLLSSMRLLGDSCSSFAERCVSGTVANRDRIQEIMSTSLMLVTALNPKIGYDNASKVAK 443          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: A0A7S3XU16_HETAK (Fumarate hydratase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU16_HETAK)

HSP 1 Score: 297 bits (761), Expect = 1.520e-98
Identity = 150/197 (76.14%), Postives = 169/197 (85.79%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +GYD  IAALI+EETG PFVTA NKFEALAAHD++VE SGA++ +A SLMKIANDIRFLGSGPR GLGELNLPENEPG          SSIMPGK+NPTQCEALTMV AQVMGNHVA+TVGGSNGHFELNVFKPVM ANLLSS++L+GD C SF+  CV GI+AN E+I E+MS+SLMLVTALNPKIGYDNA+KV +
Sbjct:   93 EGYDVAIAALIAEETGYPFVTAENKFEALAAHDAVVECSGAMSVLAASLMKIANDIRFLGSGPRSGLGELNLPENEPG----------SSIMPGKINPTQCEALTMVAAQVMGNHVAITVGGSNGHFELNVFKPVMIANLLSSIQLIGDACRSFSRNCVVGIQANTEKINELMSNSLMLVTALNPKIGYDNAAKVAK 279          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: A0A5D6XXM5_9STRA (Fumarate hydratase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXM5_9STRA)

HSP 1 Score: 301 bits (770), Expect = 9.300e-98
Identity = 150/196 (76.53%), Postives = 169/196 (86.22%), Query Frame = 1
Query:    4 GYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            GYD +IAA+I++ETGLPFVTA NKFEALAAHD++VEASGA+NT+ACS+MKIANDIRFLGSGPR GLGEL LP NEPG          SSIMPGKVNPTQCEA+TMVCAQVMGNHVAVTVGG+NGHFELNVFKPVM +NLLSS+RLLGD   +F D CV GIEANR+ I ++M +SLMLVTALNP IGYDNASKV +
Sbjct:  271 GYDAEIAAIIADETGLPFVTAPNKFEALAAHDAVVEASGAMNTIACSIMKIANDIRFLGSGPRSGLGELTLPANEPG----------SSIMPGKVNPTQCEAITMVCAQVMGNHVAVTVGGANGHFELNVFKPVMISNLLSSIRLLGDSAVAFTDNCVVGIEANRDTIDKLMKNSLMLVTALNPHIGYDNASKVAK 456          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: A0A2D4BP08_PYTIN (Fumarate hydratase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BP08_PYTIN)

HSP 1 Score: 300 bits (768), Expect = 1.110e-97
Identity = 149/197 (75.63%), Postives = 170/197 (86.29%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +GYDK+IAA+I++ETG PFVTA NKFEALAAHD++VEASGA+NT+ACS+MKIANDIRFLGSGPR GLGEL LP NEPG          SSIMPGKVNPTQCEA+TMVCAQVMGNHVAV+VGGSNGHFELNVFKPVM +NLLSS+RLLGD   +F D CV GIEANR+ I ++M +SLMLVTALNP IGYDNA+KV +
Sbjct:  252 KGYDKEIAAIIAQETGYPFVTAPNKFEALAAHDAVVEASGAMNTIACSIMKIANDIRFLGSGPRSGLGELTLPANEPG----------SSIMPGKVNPTQCEAITMVCAQVMGNHVAVSVGGSNGHFELNVFKPVMISNLLSSIRLLGDSAVAFTDNCVVGIEANRDTIDKLMKNSLMLVTALNPHIGYDNAAKVAK 438          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: W2Q158_PHYPN (Fumarate hydratase n=23 Tax=Peronosporaceae TaxID=4777 RepID=W2Q158_PHYPN)

HSP 1 Score: 300 bits (767), Expect = 7.030e-97
Identity = 148/197 (75.13%), Postives = 169/197 (85.79%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +GYD +IA +I++ET LPF+TA NKFEALAAHD++VEASGA+NT+ACSLMKIANDIRFLGSGPR GLGEL LP NEPG          SSIMPGKVNPTQCEA+TMVCAQVMGNHVAVTVGGSNGHFELNVFKPVM +NLLSS+RL+GD C +F D C+ GIEANRE+I ++M +SLMLVTALNP IGYD ASKV +
Sbjct:  305 KGYDAEIAKIIADETKLPFITAPNKFEALAAHDAVVEASGAMNTIACSLMKIANDIRFLGSGPRSGLGELTLPANEPG----------SSIMPGKVNPTQCEAITMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMISNLLSSIRLIGDSCNAFTDNCIVGIEANREKIDQLMKNSLMLVTALNPHIGYDKASKVAK 491          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: T0RV02_SAPDV (Fumarate hydratase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0RV02_SAPDV)

HSP 1 Score: 298 bits (763), Expect = 8.160e-97
Identity = 149/197 (75.63%), Postives = 169/197 (85.79%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +GYDK+IAA+I+ ETG PFVTA NKFEALAA+D++VEASGA+NT+ACSLMKIANDIRFLGSGPR GLGELNLP NEPG          SSIMPGKVNPTQCEA+TMVCAQV+GNHVAVTVGGSNGHFELNVFKPVM +NL+SS+RL+GD CA+F D CV GIEAN + I  +M +SLMLVTALN  IGYDNASKV +
Sbjct:  261 KGYDKEIAAIIAAETGFPFVTAPNKFEALAANDAVVEASGAMNTIACSLMKIANDIRFLGSGPRSGLGELNLPANEPG----------SSIMPGKVNPTQCEAITMVCAQVIGNHVAVTVGGSNGHFELNVFKPVMISNLISSVRLIGDSCAAFTDNCVVGIEANLDTIDRLMKNSLMLVTALNSHIGYDNASKVAK 447          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: A0A830CY19_9LAMI (Fumarate hydratase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CY19_9LAMI)

HSP 1 Score: 297 bits (760), Expect = 1.500e-96
Identity = 149/197 (75.63%), Postives = 167/197 (84.77%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +G+D KIAA +++ET LPFVTA NKFEALAAHD+ VE SGALNT+A SLMKIANDIRFLGSGPRCGLGEL LPENEPG          SSIMPGKVNPTQCEALTMVCAQVMGNHV +TVGGSNGHFELNVFKPV+A+NLL S+RLLGD CASF   CV GI+ANRERI +++  SLMLVT+LNPKIGYDNA+ V +
Sbjct:  245 KGFDVKIAAAVADETNLPFVTAENKFEALAAHDAFVETSGALNTIAVSLMKIANDIRFLGSGPRCGLGELILPENEPG----------SSIMPGKVNPTQCEALTMVCAQVMGNHVTITVGGSNGHFELNVFKPVIASNLLHSLRLLGDACASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAALVAK 431          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: A0A485LLZ0_9STRA (Fumarate hydratase n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LLZ0_9STRA)

HSP 1 Score: 296 bits (759), Expect = 3.460e-96
Identity = 149/197 (75.63%), Postives = 168/197 (85.28%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +GYDK+IAA+I++ET LPFVTA NKFEALAA+D++VEASGALNT+ACSLMKIANDIRFLGSGPR GLGELNLP NEPG          SSIMPGKVNPTQCEA+TMVCAQVMGNHVAVTVGGSNGHFELNVFKPVM +NL+SS+RL+GD   +F D CV GIEANRE I  +M +SLMLVT+LNP IGYD ASK  +
Sbjct:  263 KGYDKEIAAIIADETKLPFVTAPNKFEALAANDAVVEASGALNTIACSLMKIANDIRFLGSGPRSGLGELNLPANEPG----------SSIMPGKVNPTQCEAITMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMISNLISSIRLIGDSAVAFTDNCVVGIEANRETIDRLMKNSLMLVTSLNPYIGYDKASKAAK 449          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: UPI001CC67AD1 (fumarate hydratase 1, mitochondrial isoform X4 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC67AD1)

HSP 1 Score: 291 bits (746), Expect = 3.590e-96
Identity = 147/197 (74.62%), Postives = 166/197 (84.26%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +G+D KIAA ++EET LPFVTA NKFEALAAHD+ VE+SGALNT+A SLMKIAND+RFLGSGPRCGLGEL LPENEPG          SSIMPGKVNPTQCEALTM CAQVMGNHVA+TVGGSNGHFELNVFKP++A+NLL S RLLGD  ASF   CV GI+AN+ERI +++  SLMLVTALNPKIGYDNA+ V +
Sbjct:  114 KGFDAKIAAAVAEETKLPFVTAENKFEALAAHDAFVESSGALNTIATSLMKIANDMRFLGSGPRCGLGELVLPENEPG----------SSIMPGKVNPTQCEALTMACAQVMGNHVAITVGGSNGHFELNVFKPMIASNLLHSTRLLGDASASFEKNCVKGIQANKERISKLLHESLMLVTALNPKIGYDNAAAVAK 300          
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Match: A0A836CH65_9STRA (Fumarate hydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH65_9STRA)

HSP 1 Score: 296 bits (757), Expect = 4.130e-96
Identity = 151/197 (76.65%), Postives = 165/197 (83.76%), Query Frame = 1
Query:    1 QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLMKIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDGCASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ 591
            +GYD +IAALI++ETG PFVTA NKFEALAAHDS+VEASGA+NT+ACSLMKIANDIRFLGSGPRCGLGEL+LPENEPG          SSIMPGKVNPTQCEA+TMV AQVMGNHVA+TV GS GHFELNVFKPVM ANLL SMRL+GD    FAD CV+GI AN  RI  IM +SLMLVTALNP IGYD ASKV +
Sbjct:  241 EGYDVEIAALIAKETGYPFVTAPNKFEALAAHDSVVEASGAMNTIACSLMKIANDIRFLGSGPRCGLGELSLPENEPG----------SSIMPGKVNPTQCEAITMVAAQVMGNHVAITVSGSQGHFELNVFKPVMIANLLVSMRLVGDSARCFADNCVAGIAANEARITAIMQTSLMLVTALNPHIGYDKASKVAK 427          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57924.13266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX4_ECTSI9.160e-10985.71Fumarate hydratase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3XU16_HETAK1.520e-9876.14Fumarate hydratase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A5D6XXM5_9STRA9.300e-9876.53Fumarate hydratase n=1 Tax=Pythium brassicum TaxID... [more]
A0A2D4BP08_PYTIN1.110e-9775.63Fumarate hydratase n=2 Tax=Pythium TaxID=4797 RepI... [more]
W2Q158_PHYPN7.030e-9775.13Fumarate hydratase n=23 Tax=Peronosporaceae TaxID=... [more]
T0RV02_SAPDV8.160e-9775.63Fumarate hydratase n=2 Tax=Saprolegniaceae TaxID=4... [more]
A0A830CY19_9LAMI1.500e-9675.63Fumarate hydratase n=1 Tax=Phtheirospermum japonic... [more]
A0A485LLZ0_9STRA3.460e-9675.63Fumarate hydratase n=8 Tax=Saprolegniaceae TaxID=4... [more]
UPI001CC67AD13.590e-9674.62fumarate hydratase 1, mitochondrial isoform X4 n=1... [more]
A0A836CH65_9STRA4.130e-9676.65Fumarate hydratase n=1 Tax=Tribonema minus TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57924contigH-elongata_contig57924:65..2458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.7
Seed ortholog evalue9.2e-88
Seed eggNOG ortholog2880.D8LDX4
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
EggNOG free text desc.fumarate hydratase activity
EggNOG OGsCOG0114@1,KOG1317@2759
Ec32 ortholog descriptionFumarate hydratase (Fumarase)
Ec32 orthologEc-23_003460.1
EC4.2.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57924.13266.1prot_H-elongata_contig57924.13266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57924 65..2458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.0164032-CDS-H-elongata_contig57924:64..1581622930940.0164032-CDS-H-elongata_contig57924:64..158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 65..158 -
1691679633.2054174-CDS-H-elongata_contig57924:64..1581691679633.2054174-CDS-H-elongata_contig57924:64..158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 65..158 -
1622930940.0297465-CDS-H-elongata_contig57924:538..6271622930940.0297465-CDS-H-elongata_contig57924:538..627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 539..627 -
1691679633.2196114-CDS-H-elongata_contig57924:538..6271691679633.2196114-CDS-H-elongata_contig57924:538..627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 539..627 -
1622930940.0465753-CDS-H-elongata_contig57924:902..9801622930940.0465753-CDS-H-elongata_contig57924:902..980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 903..980 -
1691679633.2274883-CDS-H-elongata_contig57924:902..9801691679633.2274883-CDS-H-elongata_contig57924:902..980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 903..980 -
1622930940.0598495-CDS-H-elongata_contig57924:1405..14731622930940.0598495-CDS-H-elongata_contig57924:1405..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 1406..1473 -
1691679633.2354198-CDS-H-elongata_contig57924:1405..14731691679633.2354198-CDS-H-elongata_contig57924:1405..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 1406..1473 -
1622930940.0769217-CDS-H-elongata_contig57924:1788..18971622930940.0769217-CDS-H-elongata_contig57924:1788..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 1789..1897 -
1691679633.2436407-CDS-H-elongata_contig57924:1788..18971691679633.2436407-CDS-H-elongata_contig57924:1788..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 1789..1897 -
1622930940.0968425-CDS-H-elongata_contig57924:2305..24581622930940.0968425-CDS-H-elongata_contig57924:2305..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 2306..2458 -
1691679633.2512841-CDS-H-elongata_contig57924:2305..24581691679633.2512841-CDS-H-elongata_contig57924:2305..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57924 2306..2458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57924.13266.1

>prot_H-elongata_contig57924.13266.1 ID=prot_H-elongata_contig57924.13266.1|Name=mRNA_H-elongata_contig57924.13266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
QGYDKKIAALISEETGLPFVTAANKFEALAAHDSIVEASGALNTVACSLM
KIANDIRFLGSGPRCGLGELNLPENEPGEEFEFDIKLRSSIMPGKVNPTQ
CEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVMAANLLSSMRLLGDG
CASFADRCVSGIEANRERIQEIMSSSLMLVTALNPKIGYDNASKVGQ
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mRNA from alignment at H-elongata_contig57924:65..2458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57924.13266.1 ID=mRNA_H-elongata_contig57924.13266.1|Name=mRNA_H-elongata_contig57924.13266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2394bp|location=Sequence derived from alignment at H-elongata_contig57924:65..2458- (Himanthalia elongata Himel1 dioecious)
CAGGGCTATGATAAGAAGATCGCGGCGCTCATCTCGGAGGAGACGGGGCT ACCGTTCGTGACGGCGGCGAATAAGTTCGAGGCGCTCGCGGCGCACGACT CTATCGTGGAGGCTAGCGGCGCCCTCAACACCGTCGCGTGCTCGTTGATG AAGGTGGGTGGGTTCGACCCCCGCGCGCCCACTGGCTGCTGCTGCAGACA CCCGACGCGGGAGGCAGGTGGTGATGGATGGATTTCGCGGGTGGCGGTTC CGTTGTGGCGGGGCGCTGCGTGGTGCTCGTCACATCCCAGGGGGCATACC AAAGGACTATGTTGTGTGTGTGTGTGCGTGTGTATTTATTAAATTGTACA TGACCGCACAACCCGACCCTAACATGCTAATCTTTCTATGCTACTCGTAT GGATCCTCCCTATGGGGGATCATCAGTGATTGTTGCCGTCATGTCAACTT TTGATGAGACGCGACACAGGGCGAGAAACGATCGCTCTACGCGTTGGCCG AATCTCGTTCTTAGCAGTCTCCTAATTTTGTTGATTGCTGTTTCCGCCCG GCCGCGAATAGATCGCTAACGACATTCGCTTCCTGGGATCCGGTCCGCGC TGTGGCCTGGGCGAGCTCAATCTTCCAGAGAACGAACCAGGCGAGGAGTT CGAGTTTGATATCAAGCTCCGTCTGTAAATCTCGGAAGGCGTTTTTTCTT TTTGATAAAACTTCGGCCAATCAATCAATCTAACGCCGCTGCATGGCGCG CACCACCTGCATGGGTCTCTTTTTTTTCCGAGGCATTTTGAGGCTAAAGT AGTTGATTTACAGTGTGCAAATGCCGAATTCGTTGGTGTATACTTCATAT GATTAGTATGTAATATCAAAGTTGTTGGGTGTAATTAATGTTCAAAATAG TTGTATATAATGCCCTTTTGCGGAAAAGGATAACGCCGCTGTCTCTGGTC GTACTCCCTGTCGCTGTTTCTCGAGACGATCAAAGGTTCGTCCATCATGC CCGGCAAGGTGAACCCGACCCAGTGCGAAGCGCTTACCATGGTCTGTGCG CAGGTACGAAAATCAAGAAAGGCGTAACGCCTCCTCCCATCGAGCTAAAA TTTTTCATCGAGAGTGGTCTTCCATGTGTTTTTCGTTTTGTTTTTGGGGA GTGGAGGGGAAATAGGGGAAGGCAGAGGGTTTATTCGTTTGTTTGTTTTC TATCTTTTCAACGAACGACAAGCGGGTTTATGGGCCGGTCCAGTCAGCAT GTCGTGAGGACATCATCAATAAAAATATCAAAGGCAACAAGAAGAACAAT AGGGACCATAAAAGCGACGCTCAGGTGGAAGAAAGCGTGGAAAACTCGAG CATAAAACTCATGCCTCCGGGTACTTTTTTTTGCAGTTGAAGTCACAATA TAGAGTTCAAAATCCGCGCGAAAACATCAAGCATGGCAGTTGACGGTCAC GATTGGTTGCGTGACGTCATTGGTGCAGGTGATGGGGAACCACGTGGCGG TAACGGTTGGAGGCTCGAACGGTCACTTTGAGCTAAATGTCTTCAAGCCA GTCATGGTGAGGAGAGCTAGTTGGCGTCTACGTATGCGTATTTATCTTGT AGTATCCTTGAGTTATCATTGCAGCAGCCGAGCAGTGGCAACGGAGCGCT CGCTTTCGCGGAACGGGAGCGCGCTCCTGTATGTGGGTGGCTTGTTTGTG GGGTGAGGAAGGAAAGAGAGGCGGGGTGTGTGTGTGTCGGGGGGGGGGAG TTTCGTATCGTATGGTGTGACCCTCTCCAATGTTTGCCCTATCACAACCG ACCGCGTTGTTTCCCATTATTCTGACTACAGGCGGCCAACCTCTTGTCTT CCATGCGTCTTCTCGGGGACGGCTGCGCATCGTTCGCGGACCGATGCGTT TCAGGAATCGAGGCCAACCGGTATGATATATATATATAGAGAGAGATATA GTATGATGATCTTGATGTTTGTGTAATCGGGCGGTTGTTGAAGAAACTTA TAGCGCGACGGTGGCCATTTCGTACGAGAAGACGCTGACGCAGCTTTCTC GTTTTCTTGTCCAGTTATTTCGCGTGCTGTTTCCTCTCGTGTACCTACCT GGTGATGCTGTTACCATTTCATGGGGTTTTCGAAATCATAGCTTCGATAG TGTATGTATGTGTGTGTTTGTGTTGTGTAGCGTACACAAGACAATTTCTC GCGCTTTCTCTCTCTATTTCCTGCATATACTGATGACTTTGGATGATGGC TCGACCGCATGAATGTTCATGCATTTATGTGCATCCGCGACTTCCGTCAG AGAACGCATCCAAGAGATCATGTCGAGTTCGCTCATGCTGGTGACGGCTC TGAATCCCAAGATTGGCTATGACAACGCCTCCAAGGTGGGACAA
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Coding sequence (CDS) from alignment at H-elongata_contig57924:65..2458-

>mRNA_H-elongata_contig57924.13266.1 ID=mRNA_H-elongata_contig57924.13266.1|Name=mRNA_H-elongata_contig57924.13266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig57924:65..2458- (Himanthalia elongata Himel1 dioecious)
CAGGGCTATGATAAGAAGATCGCGGCGCTCATCTCGGAGGAGACGGGGCT
ACCGTTCGTGACGGCGGCGAATAAGTTCGAGGCGCTCGCGGCGCACGACT
CTATCGTGGAGGCTAGCGGCGCCCTCAACACCGTCGCGTGCTCGTTGATG
AAGCAGGGCTATGATAAGAAGATCGCGGCGCTCATCTCGGAGGAGACGGG
GCTACCGTTCGTGACGGCGGCGAATAAGTTCGAGGCGCTCGCGGCGCACG
ACTCTATCGTGGAGGCTAGCGGCGCCCTCAACACCGTCGCGTGCTCGTTG
ATGAAGATCGCTAACGACATTCGCTTCCTGGGATCCGGTCCGCGCTGTGG
CCTGGGCGAGCTCAATCTTCCAGAGAACGAACCAGGCGAGGAGTTCGAGT
TTGATATCAAGCTCCATCGCTAACGACATTCGCTTCCTGGGATCCGGTCC
GCGCTGTGGCCTGGGCGAGCTCAATCTTCCAGAGAACGAACCAGGCGAGG
AGTTCGAGTTTGATATCAAGCTCCGTTCGTCCATCATGCCCGGCAAGGTG
AACCCGACCCAGTGCGAAGCGCTTACCATGGTCTGTGCGCAGGTTCGTCC
ATCATGCCCGGCAAGGTGAACCCGACCCAGTGCGAAGCGCTTACCATGGT
CTGTGCGCAGGTGATGGGGAACCACGTGGCGGTAACGGTTGGAGGCTCGA
ACGGTCACTTTGAGCTAAATGTCTTCAAGCCAGTCATGGTGATGGGGAAC
CACGTGGCGGTAACGGTTGGAGGCTCGAACGGTCACTTTGAGCTAAATGT
CTTCAAGCCAGTCATGGCGGCCAACCTCTTGTCTTCCATGCGTCTTCTCG
GGGACGGCTGCGCATCGTTCGCGGACCGATGCGTTTCAGGAATCGAGGCC
AACCGGCGGCCAACCTCTTGTCTTCCATGCGTCTTCTCGGGGACGGCTGC
GCATCGTTCGCGGACCGATGCGTTTCAGGAATCGAGGCCAACCGAGAACG
CATCCAAGAGATCATGTCGAGTTCGCTCATGCTGGTGACGGCTCTGAATC
CCAAGATTGGCTATGACAACGCCTCCAAGGTGGGACAAAGAACGCATCCA
AGAGATCATGTCGAGTTCGCTCATGCTGGTGACGGCTCTGAATCCCAAGA
TTGGCTATGACAACGCCTCCAAGGTGGGACAA
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