mRNA_H-elongata_contig57824.13251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57824.13251.1
Unique NamemRNA_H-elongata_contig57824.13251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.120e-94
Identity = 151/264 (57.20%), Postives = 183/264 (69.32%), Query Frame = 1
Query:  454 LIREPGTSYESDIGQSTLLKSWSARYTKTRR-------------TEDLRSGPPVRKTHDGEVT---KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDHVMLFRVYWGRVFNFNPHG--KLGNW 1191
            +IR  G +Y+S IG+STL+KSWS RYTKTRR             TE   +    +K  D        +G W N I+SFVVNGE  H RERM+  LH +HS S H KCH+MGNSL DRIL+D+R++  LSESTWTTTALHHGL YGTQGPLTHP RN  N W G+GA+ T +SV+ E  NMS+LGADH D +RW ++ELPF+DFLLNARLVLTR   KNDI   LHEA+FLSCIVHA+DH ++ R+ WG+VFN +     K G W
Sbjct:    1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQPLPGAKELTPTEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHP-RNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTRVMKKNDIPPDLHEALFLSCIVHASDHTLIHRIQWGKVFNLDTTNTFKPGTW 263          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6H5J9N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N5_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.490e-69
Identity = 141/340 (41.47%), Postives = 190/340 (55.88%), Query Frame = 1
Query:  196 YYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRD----HEAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSYESDIGQSTLLKSWSARYTKTRRT-----------EDLRSGPPVRKTHDGEVTKDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALG-ADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDHVMLFRVYWGRVFNFN 1167
            YY++W ++ +L ++S  FWR     DD+  + E TS+I  LR       +A + E+ A +           P+ E R YYIDVK C L+ + R+PG++YE   G    +K WS  YTKTR                RSG     +H        KW     SF+VNG+ + +     SFLH++ + S+H KCH++GNSLV RI  D  L   L ESTWTTT LH  L+ GT GPLT+P R + N WMGIG   + +SV+ ET NM+ LG ADH    RWTE++LP +DF+L AR VL R    N I + L EA+FLS I+HA DHV+  R+ WG  F  +
Sbjct:    6 YYIRWPLAVLLGVWSAFFWRA-PTKDDVAALIEGTSLITLLRHGLPPGTDASEEEQPATS-----------PMREERRYYIDVKTCLLEHVTRQPGSTYEE--GVVFPIKFWSMSYTKTRSIGRSSXXXXXXXXXXRSGSDADTSHGKP-----KWEVRFQSFIVNGKEVTDPASQMSFLHVYLTCSSHAKCHVLGNSLVQRIYSDELLKDKLMESTWTTTWLHSALMEGTHGPLTYP-RTTTNKWMGIGCPASHKSVVAETLNMTPLGGADHARTARWTELDLPLADFMLGARRVLLRAMHDNQIPMDLLEALFLSVIMHAVDHVLADRIMWGLNFKLD 325          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.370e-40
Identity = 87/189 (46.03%), Postives = 104/189 (55.03%), Query Frame = 1
Query:  454 LIREPGTSYESDIGQSTLLKSWSARYTKTRR-----TEDLRSGPP-----------VRKTHDGEVTK------------------------------------DGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHP 864
            +IR  G +Y+S IG+STL+KSWS RYTKTRR     T   R   P           +   H  + +K                                    +G W N I+SFVVNGE  H RERM+  LH +HS S H KCH+MGNSL DRIL+D+R++  LSESTWTTTALHHGL YGTQGPLTHP
Sbjct:    1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQMTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHP 189          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6P5A8U5_BRABE (LOW QUALITY PROTEIN: uncharacterized protein LOC109483924 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A8U5_BRABE)

HSP 1 Score: 103 bits (256), Expect = 7.800e-21
Identity = 95/329 (28.88%), Postives = 154/329 (46.81%), Query Frame = 1
Query:  160 LYHRHHLIQIPVYYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRDHEAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSYESDIGQSTLLKSWSARYTKTRRTEDLRSGPPVRKTHDGEVTKDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVD-------RILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRW-TEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
            L+ RHHL+Q P+Y ++WI + + ++Y L+F   +  D DIV   E T++ + +R   + +  E                       Y + V+ C+L  L       Y+        LK+ S RYTK                        GK    +L F  NG  I  R ++FS ++ +H+ S H K HL  NSL         R ++ N +  TL ES++T+  LH+GL++ +   L      + + ++G G + T ES+++E++NMSAL A H  M  W +  +  F+  L  +RL L R   ++ + L L +A+F   IVH+ DH
Sbjct:   26 LFRRHHLLQSPMYLIRWIYAALYSLY-LLFVMRVPTDKDIVGYIENTTMGMLIRPATDGKSGE-----------------------YEVTVRDCKLRAL-----GGYK--------LKNMSLRYTK------------------------GKIGVQVLCFTRNGVRISNRCQIFSTIYFYHTHSLHTKSHLFSNSLXXXXXXCLVRHIVHNDVK-TLQESSYTSIPLHYGLLHSSVSALAWDG--NVSRYLGYGHVGTRESLVEESRNMSAL-ARHQAMDHWKSHGKESFAGKLYRSRLALQRVMERHGVDLKLLDALFNHTIVHSVDH 289          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6P5AKS3_BRABE (uncharacterized protein LOC109483926 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AKS3_BRABE)

HSP 1 Score: 101 bits (252), Expect = 2.300e-20
Identity = 95/322 (29.50%), Postives = 152/322 (47.20%), Query Frame = 1
Query:  160 LYHRHHLIQIPVYYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRDHEAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSYESDIGQSTLLKSWSARYTKTRRTEDLRSGPPVRKTHDGEVTKDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRW-TEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
            L+ RHHL+Q P+YY++WI +   ++Y L F      D DIV   E T++++ +R   +    E                       Y + V+ C+L    R  G  Y+        LK+ S RY                        K GK    +LSF  NG  +  R ++FS ++ +H+ S H K HL  NSLV R ++DN +   L ES++T+  LH+ L++ +   L      + + ++G G     ES+++E++NMSAL A H  M+RW +  +  F+  LL +RL L     +++I   L + +F   IVH+ DH
Sbjct:   21 LFRRHHLLQSPMYYIRWIYAAFYSLYLLFFMEP-PTDRDIVGYIENTTMVMLIRPAADGRLGE-----------------------YEVTVRDCKL----RASG-GYK--------LKNMSLRY------------------------KRGKRGVRLLSFTRNGVRMSNRGQIFSTVYFYHTHSFHTKSHLFSNSLV-RHIVDNNVKI-LQESSYTSIPLHYELLHSSLSVLEWDG--NVSRYLGYGGACIRESLVEESRNMSAL-AGHQAMERWKSHGKDSFAGKLLRSRLALQGVMERHEIDPKLLDPLFNHVIVHSLDH 276          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: UPI001604557D (uncharacterized protein LOC118418579 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001604557D)

HSP 1 Score: 89.0 bits (219), Expect = 2.280e-16
Identity = 65/178 (36.52%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQAL-----KNDIALSLHEAIFLSCIVHATDH 1122
            K G+    IL F  NGE I +  ++FSF   + + S+H  CHL  NSLV  I+  +R   TL EST+T+  LH+GL++    PL   S  + ++++ +G + T ESV+KE+KNMSA    H   +RW   +L   + LL  +L  +R+AL     ++++   L E +F   +VH+ DH
Sbjct:    6 KKGEDGVKILHFTRNGEEITDMSQIFSFWFFYGTLSSHANCHLFSNSLVRHIV--DRDLKTLQESTYTSIPLHYGLLHSPISPL--QSDGNVSSFLAVGVVGTRESVMKESKNMSAWEG-HQSGRRW---DLLGQESLLY-KLFRSRRALQGVMKRHEVDQKLLEPLFNHIVVHSMDH 174          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: C3Z144_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z144_BRAFL)

HSP 1 Score: 90.1 bits (222), Expect = 2.610e-16
Identity = 66/178 (37.08%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQAL-----KNDIALSLHEAIFLSCIVHATDH 1122
            K G+    IL F  NGE I +  ++FSF   + + S+H KCHL  NSLV  I+  +R   TL EST+T+  LH+GL++    PL   S  + ++++ +G + T ESV+KE+KNMSA    H   +RW   +L   + LL  +L  +R+AL     ++ +   L E +F   +VH+ DH
Sbjct:  114 KKGEDGVKILHFTRNGEEISDMSQIFSFWFFYGTLSSHAKCHLFSNSLVRHIV--DRDLKTLQESTYTSIPLHYGLLHSPISPL--QSDGNVSSFLAVGVVGTRESVMKESKNMSAWEG-HQSGRRW---DLLGQESLLY-KLFRSRRALQGVMKRHGVDQKLLEPLFNHIVVHSMDH 282          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: UPI00160002B3 (uncharacterized protein LOC118410277 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160002B3)

HSP 1 Score: 87.0 bits (214), Expect = 2.960e-15
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 1
Query:  604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEI-ELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDHVMLFRVYWGRVFNFNPHGKLGN 1188
            K GK    +L+F  NG  +  R  +FS ++ +H  S H K HL  NSLV R ++DN +  TL ES++T+  LH+ L++ +   L      S   ++G G +   ESV+KE++NMSAL   H  ++RW    +  F+  L  +RL L     ++DIA  L +A+F   IVH+ DH  +    + R F+ +P  K  N
Sbjct:  114 KTGKNGVQVLNFTRNGVDVTNRCEIFSTIYFYHIYSMHTKSHLFSNSLV-RHIVDNDVH-TLQESSYTSIPLHYELLHSSLSVLEWGGNMSR--YLGYGGVCIRESVVKESRNMSALEG-HQAVRRWNSHGKDSFAGKLFRSRLALQSVMERHDIAPKLLDALFNHTIVHSVDHHGISEWSYLR-FSLHPWDKNCN 303          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A8K0F0A4_BRALA (Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F0A4_BRALA)

HSP 1 Score: 80.1 bits (196), Expect = 6.550e-13
Identity = 58/173 (33.53%), Postives = 95/173 (54.91%), Query Frame = 1
Query:  604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
            K G+    IL F  NG+ + +R +MFS ++ +H+ S H K HL  NSLV R ++DN +  TL ES++T+  LH+ L++ +   L      S   ++G G     ES+++E++NMSAL     +    +  +  F+  L  +RL L     ++ I  +L +A+F   IVH+ DH
Sbjct:  113 KTGRNGVQILHFTRNGDDVTDRSQMFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDVK-TLQESSYTSMPLHYVLLHSSLSVLMWDGNMSQ--YLGYGDACIRESLVEESRNMSALDGHRAEEHWNSHGKDTFAGKLFRSRLALRDVMGRHGIDPTLLDALFNHTIVHSVDH 281          
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A8K0F328_BRALA (Hypp5079 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F328_BRALA)

HSP 1 Score: 79.0 bits (193), Expect = 1.610e-12
Identity = 61/174 (35.06%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWT-EIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
            K G+    IL+F  NG  +  R  MFS ++ +H  S H K HL  NSLV R ++DN +  TL ES++T+  LH+ L++ +   L      S   ++G G     ES+L+E++NMSAL     +  RW    +  F+  L  +R  L     ++DI   L +A+F   IVH+ DH
Sbjct:  114 KAGRNGVQILNFTRNGVEVGNRSEMFSTVYFYHIHSMHTKSHLFSNSLV-RHIVDNDVK-TLQESSYTSIPLHYVLLHSSLSVLMWDGNMSR--YLGYGNACIRESILEESRNMSALEGHRAE-HRWNLHGKNTFAGKLFRSRQALQSVMERHDIDPKLLDALFNHTIVHSVDH 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G8N6_ECTSI1.120e-9457.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9N5_9PHAE3.490e-6941.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBR7_9PHAE3.370e-4046.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P5A8U5_BRABE7.800e-2128.88LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A6P5AKS3_BRABE2.300e-2029.50uncharacterized protein LOC109483926 n=1 Tax=Branc... [more]
UPI001604557D2.280e-1636.52uncharacterized protein LOC118418579 n=1 Tax=Branc... [more]
C3Z144_BRAFL2.610e-1637.08Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
UPI00160002B32.960e-1535.20uncharacterized protein LOC118410277 n=1 Tax=Branc... [more]
A0A8K0F0A4_BRALA6.550e-1333.53Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A8K0F328_BRALA1.610e-1235.06Hypp5079 protein n=2 Tax=Branchiostoma lanceolatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57824contigH-elongata_contig57824:410..3626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score99.0
Seed ortholog evalue5.2e-18
Seed eggNOG ortholog7739.XP_002607654.1
EggNOG OGs2DAM2@1,2TJVI@2759,39GRE@33154,3C1VI@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002410.1
Exons5
Model size1194
Cds size1164
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57824.13251.1prot_H-elongata_contig57824.13251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57824 440..3626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.38775-UTR-H-elongata_contig57824:409..4391622930938.38775-UTR-H-elongata_contig57824:409..439Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57824 410..439 +
1691679632.5038452-UTR-H-elongata_contig57824:409..4391691679632.5038452-UTR-H-elongata_contig57824:409..439Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57824 410..439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.3999581-CDS-H-elongata_contig57824:439..6031622930938.3999581-CDS-H-elongata_contig57824:439..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 440..603 +
1691679632.5173795-CDS-H-elongata_contig57824:439..6031691679632.5173795-CDS-H-elongata_contig57824:439..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 440..603 +
1622930938.416194-CDS-H-elongata_contig57824:1049..12061622930938.416194-CDS-H-elongata_contig57824:1049..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 1050..1206 +
1691679632.535702-CDS-H-elongata_contig57824:1049..12061691679632.535702-CDS-H-elongata_contig57824:1049..1206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 1050..1206 +
1622930938.429839-CDS-H-elongata_contig57824:1964..24791622930938.429839-CDS-H-elongata_contig57824:1964..2479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 1965..2479 +
1691679632.547881-CDS-H-elongata_contig57824:1964..24791691679632.547881-CDS-H-elongata_contig57824:1964..2479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 1965..2479 +
1622930938.4463308-CDS-H-elongata_contig57824:2929..31161622930938.4463308-CDS-H-elongata_contig57824:2929..3116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 2930..3116 +
1691679632.5650823-CDS-H-elongata_contig57824:2929..31161691679632.5650823-CDS-H-elongata_contig57824:2929..3116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 2930..3116 +
1622930938.4608755-CDS-H-elongata_contig57824:3485..36261622930938.4608755-CDS-H-elongata_contig57824:3485..3626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 3486..3626 +
1691679632.5848222-CDS-H-elongata_contig57824:3485..36261691679632.5848222-CDS-H-elongata_contig57824:3485..3626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57824 3486..3626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57824.13251.1

>prot_H-elongata_contig57824.13251.1 ID=prot_H-elongata_contig57824.13251.1|Name=mRNA_H-elongata_contig57824.13251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=388bp
MKQRKRADGSHSPLSRPLSSPPHPGAKAISTRLHVKSHHLTGKLYHRHHL
IQIPVYYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRDH
EAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSY
ESDIGQSTLLKSWSARYTKTRRTEDLRSGPPVRKTHDGEVTKDGKWTNLI
LSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLS
STLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLK
ETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLH
EAIFLSCIVHATDHVMLFRVYWGRVFNFNPHGKLGNW*
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mRNA from alignment at H-elongata_contig57824:410..3626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57824.13251.1 ID=mRNA_H-elongata_contig57824.13251.1|Name=mRNA_H-elongata_contig57824.13251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3217bp|location=Sequence derived from alignment at H-elongata_contig57824:410..3626+ (Himanthalia elongata Himel1 dioecious)
GAGGAGACTTTGAAAGTGCTCAACGCAGGAATGAAGCAGCGCAAGAGAGC GGATGGCTCACACTCCCCCCTCAGCCGCCCCTTGTCTTCGCCTCCCCATC CTGGAGCCAAGGCTATTTCAACTCGCTTACATGTGAAATCCCACCACCTC ACCGGAAAACTTTACCATCGTCATCATCTCATCCAGATCCCTGTGTGAGC TACGGTCTAGACTCTGCATTTCTACGAAAACTCATCGCGCTACGCATTAT CTTCTGCCGATAATATGCATAGATTTTATAAGTTTATATGCCTTTATGTG CTAGTCTAGACCTACGTGTGCATTTGATTTGTTTGCTAAAACAACTTGGT TTTGTCTGGTAATCATTCCTCGCCAATCTGATGGGGCCCTCGATCACCAG TGTACAGCTTGCGTCTAAAACTAACTTCCTGTCTATATCACTACTCGCTG CTGTGATCAATCTCGAAGCAAGTGATTATCGAGATAGATTGTTCCTGTCG GAATGATTCGGCGCACTTGACCTGCTGAAAGAAATACCTACTACGATAGA TATCGAATGCCAACTGTTGTTGCTATAACCAACCCTAGCTCCCATTACTC AAATAGAACATTCTCGTAACGGTTTCGTGGCCGTCCCTAGGTACTATGTA AAGTGGATCATGAGCCAGATATTAGCCATGTACTCTCTGATCTTCTGGCG CACACTGGTGGACGACGACGACATCGTTAGAGTTTTCGAGGAGACGTCCA TAATCATCGCCCTGCGCCGCGACCACGAGGCCGAAAAGGCAGAGAGGGTG AGTCTAAGTAGTCCGTCGACGCCATTTTTGAGGTTATAAACACTTATATA TTAAGACACAATCTGCACAGCCCAAGCACGTAGACCGGGGTTGAGAACTT GATTGTTGATGTAATTGTTACTCGCCATGTCTCGCCTTGCTGCTGATCTA TTTGGGATTATTATCGGAATGGGTCTACACCCCACCTGAAATGATAAGGG GGATACTTCCGTAAGGATCGATCCCCATGTACTATAATAGTGGATCTTGC TAATCTTTATATGGACGGAGCTTTTTATTTTTCATATCGATTATGGCGCA TTTTTGCTGCGTTCTTCACTTCTTAATTGTATTGAAGTAGTAAATGAAAG TACTATATTGGCAGTAGAACTTCTTGCGAGTAGTCTAGCAGTAACCACGA AAGCCAGAAGCGCGGAAATAATAGGTTAGAATCCCACTATGGCTGGATAT TTTATTTCTACAGCGGAAAGCACACCAATAGGACAATGTGTGTGGGTGCT CTACTTGCATCGCGATATAAACGTTCGCAAACGTGAACGGGGGAGAGATA GATAGGCAACATTGATTGATAACCTGTCAGATTGAATGGCCCCATCGACA GAAAGTGCGATTAAATATACGTTTATATTATATCTATATCAAATCCGGTT GATCTATACTCCGCTTGATGTGATAGTCACACATATGCGTAGTATATTCC CAAACCCATATAATATGTAATCACCAACTGTATCCATCCACCAACTGGTA AATAGGAAGCTTTCAACGCCTTGAAAGCCTGCACCGAAGAAAAAGCGCAG CCGCTTCTCGAGACACGGCATTACTACATCGACGTCAAGCGGTGCGAGCT CGACCTGCTCATCCGTGAGCCCGGAACAAGTTACGAGTCCGACATCGGTC AGAGCACCCTTTTGAAGTCCTGGAGCGCACGCTATACCAAGACACGCAGG ACAGAAGACTTGCGCAGCGGACCTCCTGTTCGTAAGACCCACGACGGAGA GGTCACTAAGGATGGAAAATGGACAAATCTCATCCTGTCGTTCGTTGTTA ACGGTGAAACTATTCACGAGCGCGAGAGGATGTTCTCATTTCTGCACCTT TTTCACAGCGCCAGCACACACCCAAAATGCCATCTGATGGGAAACTCCCT GGTAGACCGCATCCTCCTCGACAACCGTCTTAGTAGTACTCTTTCAGAGT CCACCTGGACTACGACTGCGTTACACCATGGACTGGTTTATGGCACTCAA GGGCCACTAACACATCCCAGGTACTCATAGAGAATTGACATAGAACGCCC GTTTTTTCAATGCATTTTGTTTCGTGAAATCAAACGGGGAGTGTGAAAGG ATGAAAAGAGGGGGCGGAGGGGAAAAGAAATGGGAAATATTGGGGGGAAA TGATATATCTGAAAAGAAGCATCAACGTCGAGGTAATGACCTTGGAAAGG CCTGCGGAGAGGATATCAAAAGATGCATGAAGGCTGCCGCTAGCGCATGA TCTTGATACTTCATGCGCGACAAGTACCCACAAAGTGTACATCCTTCGAT ACCAACTATTACGTTGTGCATACAGATACACACGTATATTGTGTGTGCAT CATCATAACATCCCCTCCCGTGATGCCAGTCGGAAAACATATCCACCCCG TGCCCCAAACGGCTTTCTATGGCGCTTTTACCACCACGAATTGCTGGGGT GGAAAACACTGGGGAAAGAGCAGAAATTCGGCAAACGCGTGGATGGGCAT CGGAGCCATCCCAACGTGCGAATCCGTCTTGAAAGAGACTAAGAACATGA GCGCTCTCGGAGCGGATCACGTGGACATGCAGCGCTGGACCGAGATAGAG TTGCCTTTTTCCGATTTCCTGCTCAATGCACGCCTCGTTCTCACAAGGCA AGCCCTAGTTTATTTTGCTCTTGCGCTTGCATATTCAGTGGCTAGTTTGA GGGAGGCAAATTACTTGGAGATCTTCAGAAGAGGCGTGGATACGGGATTG AACTGCTGGATGTGAAGGCGCTTTCAATGTTTTGTGGACAGTTGACGAAG AGAAGAGCGATATCAGCCGTCAGATAGGAACAAAGTTACCCAGGCATCAC GTTGATGATTTTAACAATAATCAATACTTATATGGTGGCTTTCTGAAAGC GGCTCGTTATAGTAGCCGCCCAGTCCCTTTCGACTGTTACGCCTGGTGCA ATCAAGATATATACAATGCTGAGTGATACATCCACAGGCGCTCACATCGC TGCCCCGGTCGAGCAGGACCATGGAGAAGAACGACATTGCTCTTAGCCTC CACGAGGCGATCTTCTTGTCCTGCATTGTGCACGCCACGGACCATGTCAT GCTCTTCAGGGTCTACTGGGGTAGGGTATTCAATTTCAACCCTCACGGAA AGCTAGGGAACTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig57824:410..3626+

>mRNA_H-elongata_contig57824.13251.1 ID=mRNA_H-elongata_contig57824.13251.1|Name=mRNA_H-elongata_contig57824.13251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2328bp|location=Sequence derived from alignment at H-elongata_contig57824:410..3626+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCAGCGCAAGAGAGCGGATGGCTCACACTCCCCCCTCAGCCGCCC
CTTGTCTTCGCCTCCCCATCCTGGAGCCAAGGCTATTTCAACTCGCTTAC
ATGTGAAATCCCACCACCTCACCGGAAAACTTTACCATCGTCATCATCTC
ATCCAGATCCCTGTATGAAGCAGCGCAAGAGAGCGGATGGCTCACACTCC
CCCCTCAGCCGCCCCTTGTCTTCGCCTCCCCATCCTGGAGCCAAGGCTAT
TTCAACTCGCTTACATGTGAAATCCCACCACCTCACCGGAAAACTTTACC
ATCGTCATCATCTCATCCAGATCCCTGTGTACTATGTAAAGTGGATCATG
AGCCAGATATTAGCCATGTACTCTCTGATCTTCTGGCGCACACTGGTGGA
CGACGACGACATCGTTAGAGTTTTCGAGGAGACGTCCATAATCATCGCCC
TGCGCCGCGACCACGAGGCCGAAAAGGCAGAGAGGGTACTATGTAAAGTG
GATCATGAGCCAGATATTAGCCATGTACTCTCTGATCTTCTGGCGCACAC
TGGTGGACGACGACGACATCGTTAGAGTTTTCGAGGAGACGTCCATAATC
ATCGCCCTGCGCCGCGACCACGAGGCCGAAAAGGCAGAGAGGGAAGCTTT
CAACGCCTTGAAAGCCTGCACCGAAGAAAAAGCGCAGCCGCTTCTCGAGA
CACGGCATTACTACATCGACGTCAAGCGGTGCGAGCTCGACCTGCTCATC
CGTGAGCCCGGAACAAGTTACGAGTCCGACATCGGTCAGAGCACCCTTTT
GAAGTCCTGGAGCGCACGCTATACCAAGACACGCAGGACAGAAGACTTGC
GCAGCGGACCTCCTGTTCGTAAGACCCACGACGGAGAGGTCACTAAGGAT
GGAAAATGGACAAATCTCATCCTGTCGTTCGTTGTTAACGGTGAAACTAT
TCACGAGCGCGAGAGGATGTTCTCATTTCTGCACCTTTTTCACAGCGCCA
GCACACACCCAAAATGCCATCTGATGGGAAACTCCCTGGTAGACCGCATC
CTCCTCGACAACCGTCTTAGTAGTACTCTTTCAGAGTCCACCTGGACTAC
GACTGCGTTACACCATGGACTGGTTTATGGCACTCAAGGGCCACTAACAC
ATCCCAGGAAGCTTTCAACGCCTTGAAAGCCTGCACCGAAGAAAAAGCGC
AGCCGCTTCTCGAGACACGGCATTACTACATCGACGTCAAGCGGTGCGAG
CTCGACCTGCTCATCCGTGAGCCCGGAACAAGTTACGAGTCCGACATCGG
TCAGAGCACCCTTTTGAAGTCCTGGAGCGCACGCTATACCAAGACACGCA
GGACAGAAGACTTGCGCAGCGGACCTCCTGTTCGTAAGACCCACGACGGA
GAGGTCACTAAGGATGGAAAATGGACAAATCTCATCCTGTCGTTCGTTGT
TAACGGTGAAACTATTCACGAGCGCGAGAGGATGTTCTCATTTCTGCACC
TTTTTCACAGCGCCAGCACACACCCAAAATGCCATCTGATGGGAAACTCC
CTGGTAGACCGCATCCTCCTCGACAACCGTCTTAGTAGTACTCTTTCAGA
GTCCACCTGGACTACGACTGCGTTACACCATGGACTGGTTTATGGCACTC
AAGGGCCACTAACACATCCCAGCAGAAATTCGGCAAACGCGTGGATGGGC
ATCGGAGCCATCCCAACGTGCGAATCCGTCTTGAAAGAGACTAAGAACAT
GAGCGCTCTCGGAGCGGATCACGTGGACATGCAGCGCTGGACCGAGATAG
AGTTGCCTTTTTCCGATTTCCTGCTCAATGCACGCCTCGTTCTCACAAGG
CAAGCCCTACAGAAATTCGGCAAACGCGTGGATGGGCATCGGAGCCATCC
CAACGTGCGAATCCGTCTTGAAAGAGACTAAGAACATGAGCGCTCTCGGA
GCGGATCACGTGGACATGCAGCGCTGGACCGAGATAGAGTTGCCTTTTTC
CGATTTCCTGCTCAATGCACGCCTCGTTCTCACAAGGCAAGCCCTAAAGA
ACGACATTGCTCTTAGCCTCCACGAGGCGATCTTCTTGTCCTGCATTGTG
CACGCCACGGACCATGTCATGCTCTTCAGGGTCTACTGGGGTAGGGTATT
CAATTTCAACCCTCACGGAAAGCTAGGGAACTGGTGAAAGAACGACATTG
CTCTTAGCCTCCACGAGGCGATCTTCTTGTCCTGCATTGTGCACGCCACG
GACCATGTCATGCTCTTCAGGGTCTACTGGGGTAGGGTATTCAATTTCAA
CCCTCACGGAAAGCTAGGGAACTGGTGA
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