mRNA_H-elongata_contig57824.13251.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI) HSP 1 Score: 293 bits (750), Expect = 1.120e-94 Identity = 151/264 (57.20%), Postives = 183/264 (69.32%), Query Frame = 1
Query: 454 LIREPGTSYESDIGQSTLLKSWSARYTKTRR-------------TEDLRSGPPVRKTHDGEVT---KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDHVMLFRVYWGRVFNFNPHG--KLGNW 1191
+IR G +Y+S IG+STL+KSWS RYTKTRR TE + +K D +G W N I+SFVVNGE H RERM+ LH +HS S H KCH+MGNSL DRIL+D+R++ LSESTWTTTALHHGL YGTQGPLTHP RN N W G+GA+ T +SV+ E NMS+LGADH D +RW ++ELPF+DFLLNARLVLTR KNDI LHEA+FLSCIVHA+DH ++ R+ WG+VFN + K G W
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQPLPGAKELTPTEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHP-RNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTRVMKKNDIPPDLHEALFLSCIVHASDHTLIHRIQWGKVFNLDTTNTFKPGTW 263
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6H5J9N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N5_9PHAE) HSP 1 Score: 230 bits (587), Expect = 3.490e-69 Identity = 141/340 (41.47%), Postives = 190/340 (55.88%), Query Frame = 1
Query: 196 YYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRD----HEAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSYESDIGQSTLLKSWSARYTKTRRT-----------EDLRSGPPVRKTHDGEVTKDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALG-ADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDHVMLFRVYWGRVFNFN 1167
YY++W ++ +L ++S FWR DD+ + E TS+I LR +A + E+ A + P+ E R YYIDVK C L+ + R+PG++YE G +K WS YTKTR RSG +H KW SF+VNG+ + + SFLH++ + S+H KCH++GNSLV RI D L L ESTWTTT LH L+ GT GPLT+P R + N WMGIG + +SV+ ET NM+ LG ADH RWTE++LP +DF+L AR VL R N I + L EA+FLS I+HA DHV+ R+ WG F +
Sbjct: 6 YYIRWPLAVLLGVWSAFFWRA-PTKDDVAALIEGTSLITLLRHGLPPGTDASEEEQPATS-----------PMREERRYYIDVKTCLLEHVTRQPGSTYEE--GVVFPIKFWSMSYTKTRSIGRSSXXXXXXXXXXRSGSDADTSHGKP-----KWEVRFQSFIVNGKEVTDPASQMSFLHVYLTCSSHAKCHVLGNSLVQRIYSDELLKDKLMESTWTTTWLHSALMEGTHGPLTYP-RTTTNKWMGIGCPASHKSVVAETLNMTPLGGADHARTARWTELDLPLADFMLGARRVLLRAMHDNQIPMDLLEALFLSVIMHAVDHVLADRIMWGLNFKLD 325
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE) HSP 1 Score: 150 bits (380), Expect = 3.370e-40 Identity = 87/189 (46.03%), Postives = 104/189 (55.03%), Query Frame = 1
Query: 454 LIREPGTSYESDIGQSTLLKSWSARYTKTRR-----TEDLRSGPP-----------VRKTHDGEVTK------------------------------------DGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHP 864
+IR G +Y+S IG+STL+KSWS RYTKTRR T R P + H + +K +G W N I+SFVVNGE H RERM+ LH +HS S H KCH+MGNSL DRIL+D+R++ LSESTWTTTALHHGL YGTQGPLTHP
Sbjct: 1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQMTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHP 189
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6P5A8U5_BRABE (LOW QUALITY PROTEIN: uncharacterized protein LOC109483924 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A8U5_BRABE) HSP 1 Score: 103 bits (256), Expect = 7.800e-21 Identity = 95/329 (28.88%), Postives = 154/329 (46.81%), Query Frame = 1
Query: 160 LYHRHHLIQIPVYYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRDHEAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSYESDIGQSTLLKSWSARYTKTRRTEDLRSGPPVRKTHDGEVTKDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVD-------RILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRW-TEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
L+ RHHL+Q P+Y ++WI + + ++Y L+F + D DIV E T++ + +R + + E Y + V+ C+L L Y+ LK+ S RYTK GK +L F NG I R ++FS ++ +H+ S H K HL NSL R ++ N + TL ES++T+ LH+GL++ + L + + ++G G + T ES+++E++NMSAL A H M W + + F+ L +RL L R ++ + L L +A+F IVH+ DH
Sbjct: 26 LFRRHHLLQSPMYLIRWIYAALYSLY-LLFVMRVPTDKDIVGYIENTTMGMLIRPATDGKSGE-----------------------YEVTVRDCKLRAL-----GGYK--------LKNMSLRYTK------------------------GKIGVQVLCFTRNGVRISNRCQIFSTIYFYHTHSLHTKSHLFSNSLXXXXXXCLVRHIVHNDVK-TLQESSYTSIPLHYGLLHSSVSALAWDG--NVSRYLGYGHVGTRESLVEESRNMSAL-ARHQAMDHWKSHGKESFAGKLYRSRLALQRVMERHGVDLKLLDALFNHTIVHSVDH 289
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A6P5AKS3_BRABE (uncharacterized protein LOC109483926 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AKS3_BRABE) HSP 1 Score: 101 bits (252), Expect = 2.300e-20 Identity = 95/322 (29.50%), Postives = 152/322 (47.20%), Query Frame = 1
Query: 160 LYHRHHLIQIPVYYVKWIMSQILAMYSLIFWRTLVDDDDIVRVFEETSIIIALRRDHEAEKAEREAFNALKACTEEKAQPLLETRHYYIDVKRCELDLLIREPGTSYESDIGQSTLLKSWSARYTKTRRTEDLRSGPPVRKTHDGEVTKDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRW-TEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
L+ RHHL+Q P+YY++WI + ++Y L F D DIV E T++++ +R + E Y + V+ C+L R G Y+ LK+ S RY K GK +LSF NG + R ++FS ++ +H+ S H K HL NSLV R ++DN + L ES++T+ LH+ L++ + L + + ++G G ES+++E++NMSAL A H M+RW + + F+ LL +RL L +++I L + +F IVH+ DH
Sbjct: 21 LFRRHHLLQSPMYYIRWIYAAFYSLYLLFFMEP-PTDRDIVGYIENTTMVMLIRPAADGRLGE-----------------------YEVTVRDCKL----RASG-GYK--------LKNMSLRY------------------------KRGKRGVRLLSFTRNGVRMSNRGQIFSTVYFYHTHSFHTKSHLFSNSLV-RHIVDNNVKI-LQESSYTSIPLHYELLHSSLSVLEWDG--NVSRYLGYGGACIRESLVEESRNMSAL-AGHQAMERWKSHGKDSFAGKLLRSRLALQGVMERHEIDPKLLDPLFNHVIVHSLDH 276
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: UPI001604557D (uncharacterized protein LOC118418579 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001604557D) HSP 1 Score: 89.0 bits (219), Expect = 2.280e-16 Identity = 65/178 (36.52%), Postives = 101/178 (56.74%), Query Frame = 1
Query: 604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQAL-----KNDIALSLHEAIFLSCIVHATDH 1122
K G+ IL F NGE I + ++FSF + + S+H CHL NSLV I+ +R TL EST+T+ LH+GL++ PL S + ++++ +G + T ESV+KE+KNMSA H +RW +L + LL +L +R+AL ++++ L E +F +VH+ DH
Sbjct: 6 KKGEDGVKILHFTRNGEEITDMSQIFSFWFFYGTLSSHANCHLFSNSLVRHIV--DRDLKTLQESTYTSIPLHYGLLHSPISPL--QSDGNVSSFLAVGVVGTRESVMKESKNMSAWEG-HQSGRRW---DLLGQESLLY-KLFRSRRALQGVMKRHEVDQKLLEPLFNHIVVHSMDH 174
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: C3Z144_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z144_BRAFL) HSP 1 Score: 90.1 bits (222), Expect = 2.610e-16 Identity = 66/178 (37.08%), Postives = 101/178 (56.74%), Query Frame = 1
Query: 604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQAL-----KNDIALSLHEAIFLSCIVHATDH 1122
K G+ IL F NGE I + ++FSF + + S+H KCHL NSLV I+ +R TL EST+T+ LH+GL++ PL S + ++++ +G + T ESV+KE+KNMSA H +RW +L + LL +L +R+AL ++ + L E +F +VH+ DH
Sbjct: 114 KKGEDGVKILHFTRNGEEISDMSQIFSFWFFYGTLSSHAKCHLFSNSLVRHIV--DRDLKTLQESTYTSIPLHYGLLHSPISPL--QSDGNVSSFLAVGVVGTRESVMKESKNMSAWEG-HQSGRRW---DLLGQESLLY-KLFRSRRALQGVMKRHGVDQKLLEPLFNHIVVHSMDH 282
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: UPI00160002B3 (uncharacterized protein LOC118410277 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160002B3) HSP 1 Score: 87.0 bits (214), Expect = 2.960e-15 Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 1
Query: 604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEI-ELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDHVMLFRVYWGRVFNFNPHGKLGN 1188
K GK +L+F NG + R +FS ++ +H S H K HL NSLV R ++DN + TL ES++T+ LH+ L++ + L S ++G G + ESV+KE++NMSAL H ++RW + F+ L +RL L ++DIA L +A+F IVH+ DH + + R F+ +P K N
Sbjct: 114 KTGKNGVQVLNFTRNGVDVTNRCEIFSTIYFYHIYSMHTKSHLFSNSLV-RHIVDNDVH-TLQESSYTSIPLHYELLHSSLSVLEWGGNMSR--YLGYGGVCIRESVVKESRNMSALEG-HQAVRRWNSHGKDSFAGKLFRSRLALQSVMERHDIAPKLLDALFNHTIVHSVDHHGISEWSYLR-FSLHPWDKNCN 303
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A8K0F0A4_BRALA (Hypp5078 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F0A4_BRALA) HSP 1 Score: 80.1 bits (196), Expect = 6.550e-13 Identity = 58/173 (33.53%), Postives = 95/173 (54.91%), Query Frame = 1
Query: 604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWTEIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
K G+ IL F NG+ + +R +MFS ++ +H+ S H K HL NSLV R ++DN + TL ES++T+ LH+ L++ + L S ++G G ES+++E++NMSAL + + + F+ L +RL L ++ I +L +A+F IVH+ DH
Sbjct: 113 KTGRNGVQILHFTRNGDDVTDRSQMFSTIYFYHTHSMHTKSHLFSNSLV-RHIVDNDVK-TLQESSYTSMPLHYVLLHSSLSVLMWDGNMSQ--YLGYGDACIRESLVEESRNMSALDGHRAEEHWNSHGKDTFAGKLFRSRLALRDVMGRHGIDPTLLDALFNHTIVHSVDH 281
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Match: A0A8K0F328_BRALA (Hypp5079 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F328_BRALA) HSP 1 Score: 79.0 bits (193), Expect = 1.610e-12 Identity = 61/174 (35.06%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 604 KDGKWTNLILSFVVNGETIHERERMFSFLHLFHSASTHPKCHLMGNSLVDRILLDNRLSSTLSESTWTTTALHHGLVYGTQGPLTHPSRNSANAWMGIGAIPTCESVLKETKNMSALGADHVDMQRWT-EIELPFSDFLLNARLVLTRQALKNDIALSLHEAIFLSCIVHATDH 1122
K G+ IL+F NG + R MFS ++ +H S H K HL NSLV R ++DN + TL ES++T+ LH+ L++ + L S ++G G ES+L+E++NMSAL + RW + F+ L +R L ++DI L +A+F IVH+ DH
Sbjct: 114 KAGRNGVQILNFTRNGVEVGNRSEMFSTVYFYHIHSMHTKSHLFSNSLV-RHIVDNDVK-TLQESSYTSIPLHYVLLHSSLSVLMWDGNMSR--YLGYGNACIRESILEESRNMSALEGHRAE-HRWNLHGKNTFAGKLFRSRQALQSVMERHDIDPKLLDALFNHTIVHSVDH 282 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57824.13251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57824.13251.1 >prot_H-elongata_contig57824.13251.1 ID=prot_H-elongata_contig57824.13251.1|Name=mRNA_H-elongata_contig57824.13251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=388bp MKQRKRADGSHSPLSRPLSSPPHPGAKAISTRLHVKSHHLTGKLYHRHHLback to top mRNA from alignment at H-elongata_contig57824:410..3626+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57824.13251.1 ID=mRNA_H-elongata_contig57824.13251.1|Name=mRNA_H-elongata_contig57824.13251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3217bp|location=Sequence derived from alignment at H-elongata_contig57824:410..3626+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57824:410..3626+ >mRNA_H-elongata_contig57824.13251.1 ID=mRNA_H-elongata_contig57824.13251.1|Name=mRNA_H-elongata_contig57824.13251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2328bp|location=Sequence derived from alignment at H-elongata_contig57824:410..3626+ (Himanthalia elongata Himel1 dioecious)back to top |