mRNA_H-elongata_contig57805.13250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57805.13250.1
Unique NamemRNA_H-elongata_contig57805.13250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57805.13250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57805contigH-elongata_contig57805:1619..2923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size624
Cds size597
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57805.13250.1prot_H-elongata_contig57805.13250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57805 1619..2896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.2872546-CDS-H-elongata_contig57805:1618..18971622930938.2872546-CDS-H-elongata_contig57805:1618..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57805 1619..1897 -
1691679632.4677699-CDS-H-elongata_contig57805:1618..18971691679632.4677699-CDS-H-elongata_contig57805:1618..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57805 1619..1897 -
1622930938.3259945-CDS-H-elongata_contig57805:2578..28961622930938.3259945-CDS-H-elongata_contig57805:2578..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57805 2579..2896 -
1691679632.4798584-CDS-H-elongata_contig57805:2578..28961691679632.4798584-CDS-H-elongata_contig57805:2578..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57805 2579..2896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.349133-UTR-H-elongata_contig57805:2896..29231622930938.349133-UTR-H-elongata_contig57805:2896..2923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57805 2897..2923 -
1691679632.4909184-UTR-H-elongata_contig57805:2896..29231691679632.4909184-UTR-H-elongata_contig57805:2896..2923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57805 2897..2923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57805.13250.1

>prot_H-elongata_contig57805.13250.1 ID=prot_H-elongata_contig57805.13250.1|Name=mRNA_H-elongata_contig57805.13250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MVGMIYLINQSCAHDGCFKRPSYGLPGSRKAEFCSQHKRGGMIDLRTKKC
LYDGCCIQPSYGLPGTRKVEYCSQHKTEGMVDIRTKKCLHDACTTQPSYG
LPGSKKPEFCSQHKKSGMIDIQSRTCMHNGCSKSPSYGVPGSKKAELCFE
HKIVGMLNIRSKTCAHGGCPTQPSYGSPGSKKVEFCSQHKKEGMINLKK
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mRNA from alignment at H-elongata_contig57805:1619..2923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57805.13250.1 ID=mRNA_H-elongata_contig57805.13250.1|Name=mRNA_H-elongata_contig57805.13250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-elongata_contig57805:1619..2923- (Himanthalia elongata Himel1 dioecious)
GAGAGGGAGTTCTGCTCACAGCACAAGATGGTGGGTATGATCTATCTTAT
AAACCAGAGTTGTGCGCACGATGGTTGTTTCAAACGGCCAAGCTACGGGT
TACCAGGCAGCAGGAAGGCGGAATTCTGCTCCCAGCATAAGAGGGGGGGG
ATGATTGACCTCAGAACCAAAAAATGCTTGTACGATGGGTGCTGTATTCA
GCCCAGCTACGGTTTACCGGGCACCAGGAAAGTGGAGTACTGCTCCCAGC
ACAAGACGGAAGGGATGGTAGACATCAGAACCAAGAAATGCTTGCATGAT
GCGTGCACCACTCAGCCCAGCTACGGCCTACCAGGAAGCAAAAAGGTGGA
TTTCTGCTCCAAGCATAAGAAAGACGGCATGATAAACCTAAAAAAGAAAT
GCTCGCACGATGGGTGCTCATCTCAACCCAGCTACGGCTTAGCAGGAGGC
AGAAAGGCGGAGGTCTGCTCTCTCCACAAGATTCCGGGTATGATAGATAT
CAGATCCAGGACATGCAAGCAGGACTGGTGCTCCGCGAGACCCACCTGGG
GCATACCAGGCATAAGGAAGCCGGAATTCTGCTCCCAGCATAAGCGGGCG
GGCATGAAATATATCAAAACCAACCTGTGCGTGTACGATGGATGCAATAA
AAACCCCAGCTATGGCTTACCAGGCAGTAAGAAAGCGGTGGTCTGCTCAC
GACACACGGGAGCGGGTATGGTAAATCTCAAAATAATTTCATGCTCAGAA
GATGGGTGTACCTCTCAGGCCAGTTATGGTCAACGAGGCAGCAAGAAAGG
TGAGGTCTGTTCTGTGCACAAACGGGTGGGCATGATTAACGTCAGAACCA
AAGCATGCGCACACAATGGTTGCTCTATTTGGCCCAGCTACGGTGAACCT
GGCAGCAGAAAGATGGAATTCTGCTCCCAGCACAAAAGAGAGGGTATGAT
TCATCTAAGGACGCAGCCATGCGCGCACGATGGGTGTTCCACAAGGCCCA
GCTACGGATTACAAGGAACCAAAAAGCCGGAATTCTGCTCCCAGCACAAG
AAATCGGGCATGATAGATATCCAATCGAGAACATGTATGCACAATGGATG
CTCCAAGAGTCCCAGCTACGGCGTACCAGGATCCAAGAAGGCGGAGTTGT
GCTTCGAGCACAAGATCGTGGGTATGTTAAACATTAGAAGCAAGACATGC
GCGCACGGTGGGTGCCCCACTCAGCCCAGCTACGGCTCACCAGGCAGCAA
AAAGGTGGAGTTCTGCTCCCAGCATAAGAAAGAAGGCATGATAAACCTTA
AAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig57805:1619..2923-

>mRNA_H-elongata_contig57805.13250.1 ID=mRNA_H-elongata_contig57805.13250.1|Name=mRNA_H-elongata_contig57805.13250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig57805:1619..2923- (Himanthalia elongata Himel1 dioecious)
ATGGTGGGTATGATCTATCTTATAAACCAGAGTTGTGCGCACGATGGTTG
TTTCAAACGGCCAAGCTACGGGTTACCAGGCAGCAGGAAGGCGGAATTCT
GCTCCCAGCATAAGAGGGGGGGGATGATTGACCTCAGAACCAAAAAATGC
TTGTACGATGGGTGCTGTATTCAGCCCAGCTACGGTTTACCGGGCACCAG
GAAAGTGGAGTACTGCTCCCAGCACAAGACGGAAGGGATGGTAGACATCA
GAACCAAGAAATGCTTGCATGATGCGTGCACCACTCAGCCCAGCTACGGC
CTACCAGGAAGCAAAAAGATGGTGGGTATGATCTATCTTATAAACCAGAG
TTGTGCGCACGATGGTTGTTTCAAACGGCCAAGCTACGGGTTACCAGGCA
GCAGGAAGGCGGAATTCTGCTCCCAGCATAAGAGGGGGGGGATGATTGAC
CTCAGAACCAAAAAATGCTTGTACGATGGGTGCTGTATTCAGCCCAGCTA
CGGTTTACCGGGCACCAGGAAAGTGGAGTACTGCTCCCAGCACAAGACGG
AAGGGATGGTAGACATCAGAACCAAGAAATGCTTGCATGATGCGTGCACC
ACTCAGCCCAGCTACGGCCTACCAGGAAGCAAAAAGCCGGAATTCTGCTC
CCAGCACAAGAAATCGGGCATGATAGATATCCAATCGAGAACATGTATGC
ACAATGGATGCTCCAAGAGTCCCAGCTACGGCGTACCAGGATCCAAGAAG
GCGGAGTTGTGCTTCGAGCACAAGATCGTGGGTATGTTAAACATTAGAAG
CAAGACATGCGCGCACGGTGGGTGCCCCACTCAGCCCAGCTACGGCTCAC
CAGGCAGCAAAAAGGTGGAGTTCTGCTCCCAGCATAAGAAAGAAGGCATG
ATAAACCTTAAAAAGCCGGAATTCTGCTCCCAGCACAAGAAATCGGGCAT
GATAGATATCCAATCGAGAACATGTATGCACAATGGATGCTCCAAGAGTC
CCAGCTACGGCGTACCAGGATCCAAGAAGGCGGAGTTGTGCTTCGAGCAC
AAGATCGTGGGTATGTTAAACATTAGAAGCAAGACATGCGCGCACGGTGG
GTGCCCCACTCAGCCCAGCTACGGCTCACCAGGCAGCAAAAAGGTGGAGT
TCTGCTCCCAGCATAAGAAAGAAGGCATGATAAACCTTAAAAAG
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