mRNA_H-elongata_contig578.13249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig578.13249.1
Unique NamemRNA_H-elongata_contig578.13249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: D8LR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR81_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 2.800e-131
Identity = 176/217 (81.11%), Postives = 197/217 (90.78%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISIL 663
            +VNYTRK+QHFAAYLVPLLF PS  C+C GTLELSWGVW+TL+GF VMIKPIREA+P+FMLQFNGLDRPEDRPHTLEWIIKYNIWPGE++IV F HLF +S Q++LVYILVFVTG+GDGLAEPVGIWLGKHKYMVRSC+AD YY+RSFEGSCCV IV+VAT++MV+  F  FW+FL AL TLP ALTLAEA SPHTMDTPFIMGVGGAMLYAII +L
Sbjct:  216 KVNYTRKVQHFAAYLVPLLFRPSPDCHCTGTLELSWGVWVTLIGFLVMIKPIREAVPLFMLQFNGLDRPEDRPHTLEWIIKYNIWPGEIMIVFFAHLFRQSYQRDLVYILVFVTGVGDGLAEPVGIWLGKHKYMVRSCDADKYYERSFEGSCCVFIVTVATIIMVFTSFATFWQFLVALLTLPMALTLAEAFSPHTMDTPFIMGVGGAMLYAIIKLL 432          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: A0A6H5J7Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Y0_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 8.530e-126
Identity = 177/249 (71.08%), Postives = 196/249 (78.71%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPE--------------------------------DRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISIL 663
            QVNYTRK+QHFAAYLVPLLF PS  C C GTLELSWGVW+TL+GF VMIKPIREAIP+FMLQFNGLDRPE                                DRPHTLEWIIKYNIWPGE++IV F HLF +S Q++LVYILVFVTG+GDGLAEPVGIWLGKHKYMVRSC+AD YY+RSFEGSCCV +V+VAT++MV+  F  FW+FL AL TLP ALTLAEA SPHTMDTPFIMGVGGAMLYAII +L
Sbjct:  122 QVNYTRKVQHFAAYLVPLLFRPSPDCYCTGTLELSWGVWVTLIGFLVMIKPIREAIPLFMLQFNGLDRPEGETATNTNTNNSAWISGPLATLPVGASSRCPQDRPHTLEWIIKYNIWPGEIMIVFFAHLFRQSYQRDLVYILVFVTGVGDGLAEPVGIWLGKHKYMVRSCDADKYYERSFEGSCCVFVVTVATIIMVFTSFATFWQFLVALLTLPMALTLAEAFSPHTMDTPFIMGVGGAMLYAIIKLL 370          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: D7G8M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M1_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 9.530e-113
Identity = 150/185 (81.08%), Postives = 170/185 (91.89%), Query Frame = 1
Query:  109 ELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISIL 663
            +LSWGVW+TL+GF VMIKPIREAIP+FMLQFNGLDRPEDRPHTLEWIIKYNIWPGE++IV F HLF +S Q++LVYILVFVTG+GDGLAEPVGIWLGKHKYMVRSC+AD YY+RSFEGSCCV +V+VAT++MV+  F  FW+FL AL TLP ALTLAEA SPHTMDTPFIMGVGGAMLYAII++L
Sbjct:   51 DLSWGVWVTLIGFLVMIKPIREAIPLFMLQFNGLDRPEDRPHTLEWIIKYNIWPGEIMIVFFAHLFLESNQRDLVYILVFVTGVGDGLAEPVGIWLGKHKYMVRSCDADKYYERSFEGSCCVFVVTVATIIMVFTSFATFWQFLVALLTLPMALTLAEAFSPHTMDTPFIMGVGGAMLYAIINLL 235          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: K3WMH4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMH4_GLOUD)

HSP 1 Score: 247 bits (631), Expect = 1.350e-77
Identity = 116/216 (53.70%), Postives = 147/216 (68.06%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISI 660
            +VNYTRK Q  AAYL+PLL  P   CNC+G LEL+WG ++TLLGF V+IKPIRE    FMLQFN LDRPEDRPHTL+WI+  N++PG  +++ F  LF ++ Q +LV+IL+FVT IGDGLAEPVGI  GKHKY   +C +   Y RSFEGS CV I  +    + Y DFD   +    +  LP  +  AEA +PHTMD P +M   G +LY +I +
Sbjct:  180 KVNYTRKFQLLAAYLIPLLAKPDDSCNCNGPLELAWGDFVTLLGFLVLIKPIREKSTFFMLQFNSLDRPEDRPHTLKWIVAGNVFPGLFVLLFFRWLFERTTQSDLVFILIFVTSIGDGLAEPVGITFGKHKYSTSTCFSRRKYTRSFEGSACVFISGMVFPALQYFDFDTPMQLWVTMIVLPFVVAYAEATAPHTMDAPVLMTATGLVLYTVIHL 395          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: W4GWT5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWT5_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.800e-77
Identity = 120/217 (55.30%), Postives = 156/217 (71.89%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISIL 663
            +VNYTRKLQHFAAY+VPL+       N HG L L+WG + T++GF V+IKP+REA+ +FMLQFN LDRPEDRPHTL+WII  NI PG L+++ F  LFA++   +LVYI+VF+TG+GDGLAEPVGI  GKHKY   +C +   Y RS+EGS CV +  +    + YADFDNF + L ++  LP  +  AEAI+PHTMDTP +M   G +L+ I S +
Sbjct:  172 KVNYTRKLQHFAAYMVPLVLHT----NFHGPLALAWGDFFTMIGFLVLIKPVREALSVFMLQFNSLDRPEDRPHTLKWIIAGNIAPGLLILMFFKWLFAENG--DLVYIIVFITGVGDGLAEPVGIMWGKHKYKTTACFSSRAYTRSWEGSACVFLSGMIFPALQYADFDNFTQVLVSMLVLPPTMAYAEAIAPHTMDTPVLMIGCGVILWFITSFI 382          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: A0A5D6Y2P1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2P1_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.500e-77
Identity = 118/216 (54.63%), Postives = 148/216 (68.52%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISI 660
            +VNYTRKLQ  AAYL+PLL  P   C C+G LEL+WG ++TLLGF  +IKP+RE    FMLQFN LDRPEDRPHTL+WI+  N++PG  +++ F  LFA + Q +LV+ILVFVT IGDGLAEPVGI  GKHKY   SC +   Y RSFEGS CV +  +    + YADF +  +    +  LP  +  AEA +PHTMD P +M   G +LYA+I I
Sbjct:  177 KVNYTRKLQLLAAYLIPLLVKPDAACACNGALELAWGDFVTLLGFLALIKPVRERATFFMLQFNSLDRPEDRPHTLKWIVAGNVFPGLFVLLFFRWLFATTTQADLVFILVFVTAIGDGLAEPVGIAFGKHKYSTSSCFSRRKYTRSFEGSACVFLSGMVFPALQYADFASPTQLWATMLVLPFVVAYAEATAPHTMDAPVLMTSTGLVLYAVIHI 392          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: A0A024TKV5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKV5_9STRA)

HSP 1 Score: 239 bits (609), Expect = 3.540e-76
Identity = 117/215 (54.42%), Postives = 153/215 (71.16%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIIS 657
            +VNYTRKLQHFAAY+VPL+       N HG L L+WG + T++GF V+IKP+RE++  FMLQFN LDRPEDRPHTL+WII  NI PG  +++ F  LFA++   +LVYI+VF+TGIGDGLAEPVGI  GKHKY   +C +   Y RS+EGS CV +  +    + YADFD+F + L ++  LP  +  AEAI+PHTMDTP +M   G +L+ I +
Sbjct:   42 KVNYTRKLQHFAAYMVPLVMHT----NFHGPLALAWGDFFTMIGFLVLIKPVRESLSFFMLQFNSLDRPEDRPHTLKWIIAGNIAPGLFILMFFKWLFAENG--DLVYIIVFITGIGDGLAEPVGIMWGKHKYKTTACFSTRAYTRSWEGSTCVFLSGMIFPALQYADFDSFAQVLVSMIVLPPTMAYAEAIAPHTMDTPVLMIGCGIILWVITT 250          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: A0A1W0AB65_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB65_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.000e-75
Identity = 119/217 (54.84%), Postives = 153/217 (70.51%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISIL 663
            +VNYTRKLQHFAAY+VPL+       N HG L L+WG + T++GF V+IKPIREA   FMLQFN LDRPEDRPHTL+WII  NI PG  +++ F  LF +  Q  L +I++F+TGIGDGLAEPVGI  GKHKY  RSC +   Y RS+EGS CV +  +    + YA+FDNF++ L A+  LP  +  AEA +PHTMDTP +M   GA+L+A+  ++
Sbjct:  178 KVNYTRKLQHFAAYMVPLVIHS----NYHGPLALAWGDFFTMMGFLVLIKPIREASTFFMLQFNSLDRPEDRPHTLDWIIAGNIAPGLFILLFFKWLFGE--QGALTFIIIFITGIGDGLAEPVGIAWGKHKYKTRSCFSTRKYTRSWEGSSCVFLSGMIFPALQYANFDNFYQVLLAMLILPPTMAYAEATAPHTMDTPVLMVGCGAILFALTRLV 388          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: A0A067BVC8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVC8_SAPPC)

HSP 1 Score: 239 bits (611), Expect = 4.770e-75
Identity = 123/217 (56.68%), Postives = 152/217 (70.05%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIISIL 663
            +VNYTRKLQHFAAY+VPL+   S      G L L+WG   T++GFFV+IKPIREA   FMLQFN LDRPEDRPHTL+WII  NI PG  +++ F  LFA +   NLV+I+VF+TGIGDGLAEPVGI  GKHKY  R+  +   Y RS+EGS CV +  +    + YADFDNF + L A+  LP  +  AEAI+PHTMDTP +M   G ++YAI + L
Sbjct:  149 KVNYTRKLQHFAAYMVPLVIHTSFS----GPLALAWGDLFTMVGFFVLIKPIREASSFFMLQFNSLDRPEDRPHTLKWIIAGNIAPGLFILMFFKWLFATNG--NLVFIIVFITGIGDGLAEPVGIMWGKHKYKTRALFSTRKYTRSWEGSACVFLSGMIFPALQYADFDNFTQVLTAMLVLPPTMAYAEAIAPHTMDTPVLMIGCGFIMYAITTYL 359          
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Match: A0A6G0WU77_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU77_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.350e-74
Identity = 119/215 (55.35%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   13 QVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFFVMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTHLFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQRSFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHTMDTPFIMGVGGAMLYAIIS 657
            +VNYTRKLQHFAAY+VPL+       N  G + L+WG + T++GF V+IKPIRE++  FMLQFN LDRPEDRPHTL+WII  NI PG  +++ F  LFA++   +LVYI+VF+TGIGDGLAEPVGI  GKHKY   +C A   Y RS+EGS CV +  +    + YADFDNF + L ++  LP  +  AEAI+PHTMDTP +M   G +L+ I S
Sbjct:  173 KVNYTRKLQHFAAYMVPLVLHT----NFSGHIALAWGDFFTMIGFLVLIKPIRESLSFFMLQFNSLDRPEDRPHTLKWIIAGNIAPGLFILMFFKWLFAENG--DLVYIIVFITGIGDGLAEPVGIMWGKHKYKTTACFASRAYTRSWEGSACVFLSGMIFPALQYADFDNFTQVLVSMLVLPPTMAYAEAIAPHTMDTPVLMIGCGIILWFICS 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig578.13249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR81_ECTSI2.800e-13181.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7Y0_9PHAE8.530e-12671.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8M1_ECTSI9.530e-11381.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WMH4_GLOUD1.350e-7753.70Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W4GWT5_9STRA1.800e-7755.30Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A5D6Y2P1_9STRA3.500e-7754.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024TKV5_9STRA3.540e-7654.42Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1W0AB65_9STRA2.000e-7554.84Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067BVC8_SAPPC4.770e-7556.68Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6G0WU77_9STRA1.350e-7455.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig578contigH-elongata_contig578:5070..7448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue6.1e-104
Seed eggNOG ortholog2880.D8LR81
EggNOG OGs2CMNQ@1,2QR22@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size666
Cds size666
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig578.13249.1prot_H-elongata_contig578.13249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig578 5070..7448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.1394897-CDS-H-elongata_contig578:5069..52221622930938.1394897-CDS-H-elongata_contig578:5069..5222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 5070..5222 -
1691679632.4139287-CDS-H-elongata_contig578:5069..52221691679632.4139287-CDS-H-elongata_contig578:5069..5222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 5070..5222 -
1622930938.1917152-CDS-H-elongata_contig578:5599..57311622930938.1917152-CDS-H-elongata_contig578:5599..5731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 5600..5731 -
1691679632.4227097-CDS-H-elongata_contig578:5599..57311691679632.4227097-CDS-H-elongata_contig578:5599..5731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 5600..5731 -
1622930938.208555-CDS-H-elongata_contig578:6148..63071622930938.208555-CDS-H-elongata_contig578:6148..6307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 6149..6307 -
1691679632.43059-CDS-H-elongata_contig578:6148..63071691679632.43059-CDS-H-elongata_contig578:6148..6307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 6149..6307 -
1622930938.2263248-CDS-H-elongata_contig578:6704..68151622930938.2263248-CDS-H-elongata_contig578:6704..6815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 6705..6815 -
1691679632.4416535-CDS-H-elongata_contig578:6704..68151691679632.4416535-CDS-H-elongata_contig578:6704..6815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 6705..6815 -
1622930938.241011-CDS-H-elongata_contig578:7337..74481622930938.241011-CDS-H-elongata_contig578:7337..7448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 7338..7448 -
1691679632.4556754-CDS-H-elongata_contig578:7337..74481691679632.4556754-CDS-H-elongata_contig578:7337..7448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig578 7338..7448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig578.13249.1

>prot_H-elongata_contig578.13249.1 ID=prot_H-elongata_contig578.13249.1|Name=mRNA_H-elongata_contig578.13249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
HVRLQVNYTRKLQHFAAYLVPLLFSPSKGCNCHGTLELSWGVWMTLLGFF
VMIKPIREAIPIFMLQFNGLDRPEDRPHTLEWIIKYNIWPGELLIVLFTH
LFAKSAQQNLVYILVFVTGIGDGLAEPVGIWLGKHKYMVRSCNADIYYQR
SFEGSCCVLIVSVATVVMVYADFDNFWEFLFALCTLPTALTLAEAISPHT
MDTPFIMGVGGAMLYAIISIL*
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mRNA from alignment at H-elongata_contig578:5070..7448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig578.13249.1 ID=mRNA_H-elongata_contig578.13249.1|Name=mRNA_H-elongata_contig578.13249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2379bp|location=Sequence derived from alignment at H-elongata_contig578:5070..7448- (Himanthalia elongata Himel1 dioecious)
CATGTTCGACTGCAGGTGAACTACACCCGAAAACTTCAGCACTTCGCTGC CTACCTGGTACCCCTCCTGTTCTCCCCCTCCAAGGGATGCAACTGCCACG GCACGCTTGAGGTATGAAAACTTGCCAACCCGCAGACACAGTCAAACTCA ACCATTATATAATAAGTACAAGCCAGAGCTGCAGCAATAGTCAAAGCCTC ATCTATAGCGGCACAGTTGCACGTGGATATACATCGTATTATCTACAGAT ATATACACTTCCCCCTCTATAACCCCCTGGCCGCAGCGAGGGAATGACGC TTCCACGTGGATGCCTTGAGCGTATAAATCACTTTGAAAGTGAAATGCTG GTCATTGTATACTACAGTTTCCCCTCGATCCACTGCGCATGTTGTGAAAT TTGTGTGCATTTGTGCGTTACGAGTGCGTACAGATGCTCGGATTCCCTGC AAGTAGAGTGGTTGCTCCTTCCACCCTTGGATACCGTTACCACCTCTTCC GTTCGAAGCTATTCATCGCACACGTATGGCGCTTGCCGTTTGCCACCCTG AACGAGTTCCAATCGTATCCCACATTGGCTGTACTCAAGGCTTGTTCTTC TCTTTTTATGTGCGCGTGCACTTTTCTGCACAGCTGAGCTGGGGCGTGTG GATGACGCTTCTCGGCTTCTTTGTAATGATCAAGCCCATCCGTGAGGCCA TCCCGATTTTCATGCTTCAGTTTAACGGCCTCGATCGCCCCGAGGTACTT GTGGAACGAAACAACATCCCTAGCGGGGTAGAGTTCCTCATACCAAAATA CTTCTCGTAACCCCATCATCTCTTTCTCTCGATCTCTCCACCCGCCGATG CAAATCGTTCTAAGGTGCTTGAATCGCCCCTCGACTACACCCCCGTTGCT TGTGTTATACGTAATCGTATGTTACACCTGTGACACTATGCTTCAATATT CCACTGACGAAATATACTTGACGATCGCCATGAGGACAGTGCTCACCGAC CGAGATTCTCAAGGACAAATTACAGTCGTCGTTGATTTGGATATTGTGAC TTACCACCTCGCTCCCTTGCCCCCCTCCCGTTCCACCACGGTGGGGCACT GTCACCTTCCTTATAATGCACTTGGCCGGCCGTTTAACCAGGACCGCCCG CACACCTTGGAATGGATAATTAAATATAACATCTGGCCCGGCGAGCTGCT GATAGTTTTATTTACTCATCTGTTCGCGAAGTCCGCCCAGCAAAACCTGG TTTATATACTTGTCTTTGTAACGGGTATAGGAGATGGCCTGGCGGAACCG GTCAGTCTGTTCGTGGCGCTATGTGGTTACGTTTAAATCTTCTGTGGGTT ATGACTTGTATATATATATAGTATATATTTCCTTCTCGCTGATGTGGATT TTTGGGTCAGCAAGTCAGGTTTGGTGTACGTAATTTGCCTCGTCGAAGTT GCTGTGACGCCACACACGACATGCAAAAGAGCTTCTCAGTGTTCAGGTAT AATGGGAGGGGCTTTCCCGTGGATAATGCCGAATGACTGGAGGCGTATCG CCTACAATCCTCGTCGGGGGATACGTGCGACGGGCATCACCCCCCACCCC CCACCCCTTTTTGTCATTAACACACCAAAAACACCATAGGGTTGCCGTGG AAGTGTAGGCACATGTTTCTCTATACTTTAAGCTTTATCTTTGTGGCGTT CGCGCGTGCACCTGCAGGTGGGTATTTGGCTCGGGAAGCACAAGTACATG GTCCGCAGCTGCAACGCTGACATATACTATCAGCGCTCATTCGAAGGCTC GTGCTGCGTCTTGATTGTGTCAGTGGCCACAGTCGTCATGGTTTACGCGG TGAGAGACCGTATCCCTAACGCAGCGCCCTTCGCTTTGTTTACGCATGTT TCGCAACTTCAAAGCCTTTCCCCCTATTTGGTCTACGAGTACCTCTATTT TTTACCCCCCTAGTCCCCGTGTACTCTCGTTCTTTGTATAACGGTTGACT AGCCAACGATACTGAGAGGAATATTGTGTCTTGCGGGAGGAGAACTGGTT CGATGGGTTACAAGTACGAAAGTTGCTGTCGAAAGTTCTTAGAGGTGACT AGTTCTTGCTTAACGAAGGGTGAACCTTCAGGTAAAGGGTCGCGTGTGAT GTACCCGACGCGCCTGTCCGTTTGATCTTACCTCTGGATCCCCTTCCTCC CTTCTCCCGTCGCCCGCACGCGACAGGACTTTGACAACTTCTGGGAGTTT TTGTTTGCCCTGTGCACGCTGCCGACGGCTCTGACGCTGGCAGAGGCGAT TTCCCCTCATACCATGGACACCCCATTTATAATGGGGGTCGGAGGCGCAA TGCTCTACGCTATAATCTCCATTCTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig578:5070..7448-

>mRNA_H-elongata_contig578.13249.1 ID=mRNA_H-elongata_contig578.13249.1|Name=mRNA_H-elongata_contig578.13249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig578:5070..7448- (Himanthalia elongata Himel1 dioecious)
CATGTTCGACTGCAGGTGAACTACACCCGAAAACTTCAGCACTTCGCTGC
CTACCTGGTACCCCTCCTGTTCTCCCCCTCCAAGGGATGCAACTGCCACG
GCACGCTTGAGCATGTTCGACTGCAGGTGAACTACACCCGAAAACTTCAG
CACTTCGCTGCCTACCTGGTACCCCTCCTGTTCTCCCCCTCCAAGGGATG
CAACTGCCACGGCACGCTTGAGCTGAGCTGGGGCGTGTGGATGACGCTTC
TCGGCTTCTTTGTAATGATCAAGCCCATCCGTGAGGCCATCCCGATTTTC
ATGCTTCAGTTTAACGGCCTCGATCGCCCCGAGCTGAGCTGGGGCGTGTG
GATGACGCTTCTCGGCTTCTTTGTAATGATCAAGCCCATCCGTGAGGCCA
TCCCGATTTTCATGCTTCAGTTTAACGGCCTCGATCGCCCCGAGGACCGC
CCGCACACCTTGGAATGGATAATTAAATATAACATCTGGCCCGGCGAGCT
GCTGATAGTTTTATTTACTCATCTGTTCGCGAAGTCCGCCCAGCAAAACC
TGGTTTATATACTTGTCTTTGTAACGGGTATAGGAGATGGCCTGGCGGAA
CCGGACCGCCCGCACACCTTGGAATGGATAATTAAATATAACATCTGGCC
CGGCGAGCTGCTGATAGTTTTATTTACTCATCTGTTCGCGAAGTCCGCCC
AGCAAAACCTGGTTTATATACTTGTCTTTGTAACGGGTATAGGAGATGGC
CTGGCGGAACCGGTGGGTATTTGGCTCGGGAAGCACAAGTACATGGTCCG
CAGCTGCAACGCTGACATATACTATCAGCGCTCATTCGAAGGCTCGTGCT
GCGTCTTGATTGTGTCAGTGGCCACAGTCGTCATGGTTTACGCGGTGGGT
ATTTGGCTCGGGAAGCACAAGTACATGGTCCGCAGCTGCAACGCTGACAT
ATACTATCAGCGCTCATTCGAAGGCTCGTGCTGCGTCTTGATTGTGTCAG
TGGCCACAGTCGTCATGGTTTACGCGGACTTTGACAACTTCTGGGAGTTT
TTGTTTGCCCTGTGCACGCTGCCGACGGCTCTGACGCTGGCAGAGGCGAT
TTCCCCTCATACCATGGACACCCCATTTATAATGGGGGTCGGAGGCGCAA
TGCTCTACGCTATAATCTCCATTCTATGAGACTTTGACAACTTCTGGGAG
TTTTTGTTTGCCCTGTGCACGCTGCCGACGGCTCTGACGCTGGCAGAGGC
GATTTCCCCTCATACCATGGACACCCCATTTATAATGGGGGTCGGAGGCG
CAATGCTCTACGCTATAATCTCCATTCTATGA
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