mRNA_H-elongata_contig57581.13229.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57581.13229.1
Unique NamemRNA_H-elongata_contig57581.13229.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.450e-33
Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 KEMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDREVVG 285
            +E+VP+L++ Y+LLLSTR GSM+AA+CAA+GGAKERKRMMR+LKG+VAASL HRD+Y+AVIRLVESVDDT++CQK ILAELLKP E +      G
Sbjct:  361 QELVPQLVDSYILLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLMHRDAYIAVIRLVESVDDTVTCQKAILAELLKPKEVTPKTTPAG 455          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.360e-26
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    4 EMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDREVVG 285
            +MVP +++ Y+ LLSTR GS +AA+CAAYG AK+RKRMM+  KG V  SL HRD+YLAV+RLV SVDDT++CQK++LAELL PL       V G
Sbjct:  386 DMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTG 479          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S1TQU4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQU4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.580e-18
Identity = 43/82 (52.44%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   13 PRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLE 258
            P L E  ++LL++R G+ +AA+ AAYGGA+ERKRM ++LKGHV A+L HRD+Y+A+++LV+  DDT+S +K IL E+ +  E
Sbjct:   97 PALAEHAIMLLTSREGARAAALVAAYGGARERKRMTKALKGHVKATLHHRDAYIALLKLVDVTDDTVSTKKNILPEIFEVAE 178          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: K0QZQ0_THAOC (CPL domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZQ0_THAOC)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-17
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    7 MVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDR--EVVGRETVHYPVPPVVLRD 330
            + P L E  L LLSTRAG+     C AY   K+RK+M++ LKG+  +SL HRD+YLAV+R+V+ +DDT+   KT+LAEL +  +A KD   + VGRE    P+  +V  D
Sbjct:  272 LTPALAEHSLHLLSTRAGTKVVCECFAYATVKDRKKMIKCLKGYARSSLLHRDAYLAVLRMVDVMDDTVLLNKTLLAELHRNPDAEKDDAGDEVGREDQDSPILDLVQSD 381          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S1CXQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXQ3_CYCTE)

HSP 1 Score: 87.8 bits (216), Expect = 3.620e-17
Identity = 40/78 (51.28%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   40 LLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDR 273
            +LSTRAG+   A CA YG AK+RKR+M+SLKG+  +SL HRD+YLA++RL++  DDT++  K++LAE+L    + +D+
Sbjct:   57 MLSTRAGTCVVAACAGYGTAKDRKRIMKSLKGYTRSSLLHRDAYLAILRLIQVTDDTVALHKSVLAEILTDPTSKEDK 134          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.090e-16
Identity = 41/55 (74.55%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 KEMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRD 165
            +E+VP+L++ Y+LLLSTR GSM+AA+CAA+GGAKERKRMMR+LKG+VAASLTH D
Sbjct:  362 QELVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLTHSD 416          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S2XI69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XI69_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.140e-15
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   43 LSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDRE 276
            LSTR GS+  A CA+YG  K+RKR+++SLKG+  +SL HRD+Y+A++R+V+  DDT+S  K++LAE+L   +   D E
Sbjct:   39 LSTRPGSIVVAACASYGTPKDRKRIIKSLKGYTRSSLLHRDAYIAILRIVDVTDDTVSVHKSVLAEILVTPDDKDDDE 116          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A448Z1A3_9STRA (PUM-HD domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1A3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.160e-15
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   40 LLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDRE 276
            LLSTR G+   A CA+YG  K+RKR  +SLKG+ ++SL HRD+YLA++RLV+  DDT+S QK++L E+L   +   D E
Sbjct:  299 LLSTRVGTRVVAACASYGTPKDRKRSCKSLKGYTSSSLLHRDAYLALLRLVQVTDDTVSIQKSVLNEILTKPKEGNDEE 377          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S1ZSE9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZSE9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.170e-15
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   13 PRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAEL 243
            P +++  + +LSTRAG+   A CAAYG  K+RK +MRSLKG+  +SL HRD+Y+AV+RL + VDDT++  K +L EL
Sbjct:    6 PSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 82          
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S4QEX1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEX1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-15
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 KEMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAEL 243
            + + P +++  + +LSTRAG+   A CAAYG  K+RK +MRSLKG+  +SL HRD+Y+AV+RL + VDDT++  K +L EL
Sbjct:  264 RSIAPSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7W3_9PHAE3.450e-3370.53PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T9_9STRA3.360e-2660.64Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S1TQU4_9STRA8.580e-1852.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K0QZQ0_THAOC1.550e-1746.36CPL domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S1CXQ3_CYCTE3.620e-1751.28Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
D7FHP3_ECTSI9.090e-1674.55PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2XI69_9STRA1.140e-1550.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A448Z1A3_9STRA1.160e-1551.90PUM-HD domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A7S1ZSE9_9STRA1.170e-1551.95Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QEX1_9STRA1.570e-1549.38Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57581contigH-elongata_contig57581:541..1354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1e-15
Seed eggNOG ortholog159749.K0QZQ0
Preferred namePUF8
KEGG koko:K14844
EggNOG free text desc.CPL (NUC119) domain
EggNOG OGs2XBD1@2836,KOG2050@1,KOG2050@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPumilio RNA-binding repeat protein
Ec32 orthologEc-07_006210.1
Exons2
Model size559
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57581.13229.1prot_H-elongata_contig57581.13229.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57581 547..1182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.57564-UTR-H-elongata_contig57581:540..5461622930935.57564-UTR-H-elongata_contig57581:540..546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57581 541..546 +
1691679631.3887773-UTR-H-elongata_contig57581:540..5461691679631.3887773-UTR-H-elongata_contig57581:540..546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57581 541..546 +
1622930935.6721973-UTR-H-elongata_contig57581:1182..13541622930935.6721973-UTR-H-elongata_contig57581:1182..1354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57581 1183..1354 +
1691679631.4174972-UTR-H-elongata_contig57581:1182..13541691679631.4174972-UTR-H-elongata_contig57581:1182..1354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57581 1183..1354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.5957472-CDS-H-elongata_contig57581:546..7011622930935.5957472-CDS-H-elongata_contig57581:546..701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57581 547..701 +
1691679631.3983846-CDS-H-elongata_contig57581:546..7011691679631.3983846-CDS-H-elongata_contig57581:546..701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57581 547..701 +
1622930935.6195443-CDS-H-elongata_contig57581:956..11821622930935.6195443-CDS-H-elongata_contig57581:956..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57581 957..1182 +
1691679631.4089844-CDS-H-elongata_contig57581:956..11821691679631.4089844-CDS-H-elongata_contig57581:956..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57581 957..1182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57581.13229.1

>prot_H-elongata_contig57581.13229.1 ID=prot_H-elongata_contig57581.13229.1|Name=mRNA_H-elongata_contig57581.13229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLT
HRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDREVVGRETVHYP
VPPVVLRDLFTSPRLVYASLRICIAI*
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mRNA from alignment at H-elongata_contig57581:541..1354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57581.13229.1 ID=mRNA_H-elongata_contig57581.13229.1|Name=mRNA_H-elongata_contig57581.13229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=814bp|location=Sequence derived from alignment at H-elongata_contig57581:541..1354+ (Himanthalia elongata Himel1 dioecious)
AAGGAAATGGTCCCACGGCTGCTGGAACCGTACCTGCTTCTCCTCTCGAC GAGAGCGGGATCGATGTCCGCCGCGATATGCGCGGCGTACGGGGGTGCCA AGGAGCGCAAGAGGATGATGCGCTCTCTCAAAGGCCACGTTGCTGCCTCT CTCACCCACAGGTAGTGCATCCACGGTAGTGATACGATGATGTGGATAAT TTTGAGCCTCTGATCGAGGTGGTTCGAGAGAAGGAGTGATGGAGCGTTGA CGTATACCGTGCAACCTGAGATGTCGCTATAAATACTGCCCCGGGGATCA GCGAACGCTCGCGCGTGCGCGCTCGTATTGTTTAAAATATGCCTGCATGA CGGAAACCCGACGAGGCTTTTTTATTGTGTTGGTTAGTCATATCCTTCCT TATTGTGTGCTCTCAGGGATTCTTACCTGGCTGTGATACGGCTCGTGGAG TCTGTAGACGACACAATATCGTGCCAGAAGACCATCCTTGCGGAGTTGCT GAAGCCCTTGGAGGCGAGTAAGGACCGGGAAGTGGTTGGGAGAGAGACTG TCCATTACCCTGTTCCGCCTGTGGTCCTAAGAGATCTATTCACCTCTCCC CGGTTGGTTTACGCCTCCCTACGAATTTGTATCGCGATCTAAGTTCAACT CTCCTTGTCCTAAACCTCGTCAACCAATGGTTCAAAAAGTATTCGGGCGA CGGGCTGTCCAGGTCCATCTAGTGCGTGATAATAACAAGGTTCAGTAGCA GCACTTTAGCCGACGAAAAATAGCGCCTGTGGGTTTGCAAACCCTGTCAC CGTCATCCCCCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig57581:541..1354+

>mRNA_H-elongata_contig57581.13229.1 ID=mRNA_H-elongata_contig57581.13229.1|Name=mRNA_H-elongata_contig57581.13229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig57581:541..1354+ (Himanthalia elongata Himel1 dioecious)
ATGGTCCCACGGCTGCTGGAACCGTACCTGCTTCTCCTCTCGACGAGAGC
GGGATCGATGTCCGCCGCGATATGCGCGGCGTACGGGGGTGCCAAGGAGC
GCAAGAGGATGATGCGCTCTCTCAAAGGCCACGTTGCTGCCTCTCTCACC
CACAGATGGTCCCACGGCTGCTGGAACCGTACCTGCTTCTCCTCTCGACG
AGAGCGGGATCGATGTCCGCCGCGATATGCGCGGCGTACGGGGGTGCCAA
GGAGCGCAAGAGGATGATGCGCTCTCTCAAAGGCCACGTTGCTGCCTCTC
TCACCCACAGGGATTCTTACCTGGCTGTGATACGGCTCGTGGAGTCTGTA
GACGACACAATATCGTGCCAGAAGACCATCCTTGCGGAGTTGCTGAAGCC
CTTGGAGGCGAGTAAGGACCGGGAAGTGGTTGGGAGAGAGACTGTCCATT
ACCCTGTTCCGCCTGTGGTCCTAAGAGATCTATTCACCTCTCCCCGGTTG
GTTTACGCCTCCCTACGAATTTGTATCGCGATCTAAGGATTCTTACCTGG
CTGTGATACGGCTCGTGGAGTCTGTAGACGACACAATATCGTGCCAGAAG
ACCATCCTTGCGGAGTTGCTGAAGCCCTTGGAGGCGAGTAAGGACCGGGA
AGTGGTTGGGAGAGAGACTGTCCATTACCCTGTTCCGCCTGTGGTCCTAA
GAGATCTATTCACCTCTCCCCGGTTGGTTTACGCCTCCCTACGAATTTGT
ATCGCGATCTAA
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