mRNA_H-elongata_contig57581.13229.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE) HSP 1 Score: 134 bits (338), Expect = 3.450e-33 Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 1
Query: 1 KEMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDREVVG 285
+E+VP+L++ Y+LLLSTR GSM+AA+CAA+GGAKERKRMMR+LKG+VAASL HRD+Y+AVIRLVESVDDT++CQK ILAELLKP E + G
Sbjct: 361 QELVPQLVDSYILLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLMHRDAYIAVIRLVESVDDTVTCQKAILAELLKPKEVTPKTTPAG 455
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.360e-26 Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 4 EMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDREVVG 285
+MVP +++ Y+ LLSTR GS +AA+CAAYG AK+RKRMM+ KG V SL HRD+YLAV+RLV SVDDT++CQK++LAELL PL V G
Sbjct: 386 DMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTG 479
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S1TQU4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQU4_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 8.580e-18 Identity = 43/82 (52.44%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 13 PRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLE 258
P L E ++LL++R G+ +AA+ AAYGGA+ERKRM ++LKGHV A+L HRD+Y+A+++LV+ DDT+S +K IL E+ + E
Sbjct: 97 PALAEHAIMLLTSREGARAAALVAAYGGARERKRMTKALKGHVKATLHHRDAYIALLKLVDVTDDTVSTKKNILPEIFEVAE 178
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: K0QZQ0_THAOC (CPL domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZQ0_THAOC) HSP 1 Score: 89.7 bits (221), Expect = 1.550e-17 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 7 MVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDR--EVVGRETVHYPVPPVVLRD 330
+ P L E L LLSTRAG+ C AY K+RK+M++ LKG+ +SL HRD+YLAV+R+V+ +DDT+ KT+LAEL + +A KD + VGRE P+ +V D
Sbjct: 272 LTPALAEHSLHLLSTRAGTKVVCECFAYATVKDRKKMIKCLKGYARSSLLHRDAYLAVLRMVDVMDDTVLLNKTLLAELHRNPDAEKDDAGDEVGREDQDSPILDLVQSD 381
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S1CXQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXQ3_CYCTE) HSP 1 Score: 87.8 bits (216), Expect = 3.620e-17 Identity = 40/78 (51.28%), Postives = 60/78 (76.92%), Query Frame = 1
Query: 40 LLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDR 273
+LSTRAG+ A CA YG AK+RKR+M+SLKG+ +SL HRD+YLA++RL++ DDT++ K++LAE+L + +D+
Sbjct: 57 MLSTRAGTCVVAACAGYGTAKDRKRIMKSLKGYTRSSLLHRDAYLAILRLIQVTDDTVALHKSVLAEILTDPTSKEDK 134
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 9.090e-16 Identity = 41/55 (74.55%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 1 KEMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRD 165
+E+VP+L++ Y+LLLSTR GSM+AA+CAA+GGAKERKRMMR+LKG+VAASLTH D
Sbjct: 362 QELVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLTHSD 416
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S2XI69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XI69_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.140e-15 Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 43 LSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDRE 276
LSTR GS+ A CA+YG K+RKR+++SLKG+ +SL HRD+Y+A++R+V+ DDT+S K++LAE+L + D E
Sbjct: 39 LSTRPGSIVVAACASYGTPKDRKRIIKSLKGYTRSSLLHRDAYIAILRIVDVTDDTVSVHKSVLAEILVTPDDKDDDE 116
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A448Z1A3_9STRA (PUM-HD domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1A3_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.160e-15 Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 40 LLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAELLKPLEASKDRE 276
LLSTR G+ A CA+YG K+RKR +SLKG+ ++SL HRD+YLA++RLV+ DDT+S QK++L E+L + D E
Sbjct: 299 LLSTRVGTRVVAACASYGTPKDRKRSCKSLKGYTSSSLLHRDAYLALLRLVQVTDDTVSIQKSVLNEILTKPKEGNDEE 377
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S1ZSE9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZSE9_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.170e-15 Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 13 PRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAEL 243
P +++ + +LSTRAG+ A CAAYG K+RK +MRSLKG+ +SL HRD+Y+AV+RL + VDDT++ K +L EL
Sbjct: 6 PSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 82
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Match: A0A7S4QEX1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEX1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.570e-15 Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 KEMVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTHRDSYLAVIRLVESVDDTISCQKTILAEL 243
+ + P +++ + +LSTRAG+ A CAAYG K+RK +MRSLKG+ +SL HRD+Y+AV+RL + VDDT++ K +L EL
Sbjct: 264 RSIAPSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 344 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57581.13229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57581.13229.1 >prot_H-elongata_contig57581.13229.1 ID=prot_H-elongata_contig57581.13229.1|Name=mRNA_H-elongata_contig57581.13229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MVPRLLEPYLLLLSTRAGSMSAAICAAYGGAKERKRMMRSLKGHVAASLTback to top mRNA from alignment at H-elongata_contig57581:541..1354+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57581.13229.1 ID=mRNA_H-elongata_contig57581.13229.1|Name=mRNA_H-elongata_contig57581.13229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=814bp|location=Sequence derived from alignment at H-elongata_contig57581:541..1354+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57581:541..1354+ >mRNA_H-elongata_contig57581.13229.1 ID=mRNA_H-elongata_contig57581.13229.1|Name=mRNA_H-elongata_contig57581.13229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig57581:541..1354+ (Himanthalia elongata Himel1 dioecious)back to top |