mRNA_H-elongata_contig57556.13226.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 8.000e-21 Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K K + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+K L + H DV Q F A +E +++RLP GE S KVVK + Y LKQ+ R+W
Sbjct: 39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQW 158
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 8.950e-21 Identity = 44/120 (36.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K K + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+K L + H DV Q F A +E +++RLP +GE S KVVK + + LKQ+ R+W
Sbjct: 346 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGWGEKSHKVVKAERAIFGLKQSGRQW 465
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.110e-20 Identity = 43/120 (35.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
PK R S+W +K K + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+KG+++ H DV Q + A+ +E I++RLP GE S K+V+ + Y LKQ+ R+W
Sbjct: 117 PKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQW 236
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.430e-19 Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K K R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+KG+++ H DV Q + A+ +E ++++LP G+ S K+ K + Y LKQ+ R+W
Sbjct: 285 PEGRRPVSSKWCFSWKTNKEGKIDKFEARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 404
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.660e-19 Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR GS+WA ++ + + RMVA+GF+Q+ D+++H ++S P+ +K + + +KG + H DV Q ++ A E IY+R P G +S KV K+ + Y LKQ+ REW
Sbjct: 315 PEGRKAIGSKWAFSWRTNEKGLIVDFKARMVARGFSQIPDIDFHHSSSACPSAAFIKAVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLRFPEGCGSMSGKV-KVERALYGLKQSGREW 433
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.900e-19 Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K E + T + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+KG+++ H DV Q + A+ +E ++++LP G+ S K+ K + Y LKQ+ R+W
Sbjct: 175 PEGRRPVSSKWCFSWK-TNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 294
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.140e-19 Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+ +K K + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+K L + H DV Q F A +E +++RLP GE S KVVK + Y LKQ+ R+W
Sbjct: 157 PEGRRPVSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQW 276
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.780e-19 Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K E + T + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+KG+++ H DV Q + A+ +E ++++LP G+ S K+ K + Y LKQ+ R+W
Sbjct: 576 PEGRRPVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 695
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.820e-19 Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K E + T + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+KG+++ H DV Q + A+ +E ++++LP G+ S K+ K + Y LKQ+ R+W
Sbjct: 776 PEGRRPVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 895
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.870e-19 Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
P+GR S+W +K E + T + R+VA+GF+Q+ +V+Y ++SP P+ +K++ + N+KG+++ H DV Q + A+ +E ++++LP G+ S K+ K + Y LKQ+ R+W
Sbjct: 1155 PEGRRPVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57556.13226.1 >prot_H-elongata_contig57556.13226.1 ID=prot_H-elongata_contig57556.13226.1|Name=mRNA_H-elongata_contig57556.13226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTback to top mRNA from alignment at H-elongata_contig57556:1246..1626+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57556.13226.1 ID=mRNA_H-elongata_contig57556.13226.1|Name=mRNA_H-elongata_contig57556.13226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig57556:1246..1626+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57556:1246..1626+ >mRNA_H-elongata_contig57556.13226.1 ID=mRNA_H-elongata_contig57556.13226.1|Name=mRNA_H-elongata_contig57556.13226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig57556:1246..1626+ (Himanthalia elongata Himel1 dioecious)back to top |