mRNA_H-elongata_contig57556.13226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57556.13226.1
Unique NamemRNA_H-elongata_contig57556.13226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.000e-21
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K        K + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+K L + H DV Q F  A  +E +++RLP   GE S KVVK  +  Y LKQ+ R+W
Sbjct:   39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQW 158          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.950e-21
Identity = 44/120 (36.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K        K + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+K L + H DV Q F  A  +E +++RLP  +GE S KVVK  +  + LKQ+ R+W
Sbjct:  346 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGWGEKSHKVVKAERAIFGLKQSGRQW 465          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.110e-20
Identity = 43/120 (35.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            PK R    S+W   +K        K + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+KG+++ H DV Q +  A+ +E I++RLP   GE S K+V+  +  Y LKQ+ R+W
Sbjct:  117 PKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQW 236          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.430e-19
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K        K   R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+KG+++ H DV Q +  A+ +E ++++LP   G+ S K+ K  +  Y LKQ+ R+W
Sbjct:  285 PEGRRPVSSKWCFSWKTNKEGKIDKFEARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 404          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.660e-19
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR   GS+WA  ++       +  + RMVA+GF+Q+ D+++H ++S  P+   +K +  +  +KG  + H DV Q ++ A   E IY+R P   G +S KV K+ +  Y LKQ+ REW
Sbjct:  315 PEGRKAIGSKWAFSWRTNEKGLIVDFKARMVARGFSQIPDIDFHHSSSACPSAAFIKAVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLRFPEGCGSMSGKV-KVERALYGLKQSGREW 433          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-19
Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K    E  + T + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+KG+++ H DV Q +  A+ +E ++++LP   G+ S K+ K  +  Y LKQ+ R+W
Sbjct:  175 PEGRRPVSSKWCFSWK-TNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 294          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.140e-19
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+    +K        K + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+K L + H DV Q F  A  +E +++RLP   GE S KVVK  +  Y LKQ+ R+W
Sbjct:  157 PEGRRPVSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQW 276          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.780e-19
Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K    E  + T + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+KG+++ H DV Q +  A+ +E ++++LP   G+ S K+ K  +  Y LKQ+ R+W
Sbjct:  576 PEGRRPVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 695          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.820e-19
Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K    E  + T + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+KG+++ H DV Q +  A+ +E ++++LP   G+ S K+ K  +  Y LKQ+ R+W
Sbjct:  776 PEGRRPVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 895          
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.870e-19
Identity = 41/121 (33.88%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 PKGRTVGGSRWAHPYKGVGHENCLKT-RPRMVAKGFTQVQDVEYHETTSPTPALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELSSKVVKLLKCQYDLKQTDREW 360
            P+GR    S+W   +K    E  + T + R+VA+GF+Q+ +V+Y  ++SP P+   +K++  + N+KG+++ H DV Q +  A+ +E ++++LP   G+ S K+ K  +  Y LKQ+ R+W
Sbjct: 1155 PEGRRPVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW 1274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57556.13226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE8.000e-2137.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSU1_9PHAE8.950e-2136.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVP5_9PHAE2.110e-2035.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1T2_9PHAE1.430e-1933.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY6_9PHAE2.660e-1935.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8S0_9PHAE2.900e-1933.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE3.140e-1936.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE3.780e-1933.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE3.820e-1933.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.870e-1933.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57556contigH-elongata_contig57556:1246..1626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score86.7
Seed ortholog evalue8.8e-15
Seed eggNOG ortholog7425.NV16791-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.9125922-CDS-H-elongata_contig57556:1245..16261622930934.9125922-CDS-H-elongata_contig57556:1245..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57556 1246..1626 +
1691679631.194366-CDS-H-elongata_contig57556:1245..16261691679631.194366-CDS-H-elongata_contig57556:1245..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57556 1246..1626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57556.13226.1prot_H-elongata_contig57556.13226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57556 1246..1626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57556.13226.1

>prot_H-elongata_contig57556.13226.1 ID=prot_H-elongata_contig57556.13226.1|Name=mRNA_H-elongata_contig57556.13226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
PKGRTVGGSRWAHPYKGVGHENCLKTRPRMVAKGFTQVQDVEYHETTSPT
PALVPVKMIYVIENDKGLSVFHLDVSQTFVQASQEETIYMRLPPSYGELS
SKVVKLLKCQYDLKQTDREWCLLLVT*
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mRNA from alignment at H-elongata_contig57556:1246..1626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57556.13226.1 ID=mRNA_H-elongata_contig57556.13226.1|Name=mRNA_H-elongata_contig57556.13226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig57556:1246..1626+ (Himanthalia elongata Himel1 dioecious)
CCAAAAGGTCGGACGGTTGGCGGGTCTCGATGGGCGCACCCGTACAAGGG TGTTGGACATGAAAATTGCTTGAAAACAAGACCCAGAATGGTTGCGAAAG GGTTCACTCAAGTCCAGGATGTAGAATATCACGAGACAACGTCCCCCACA CCCGCATTAGTGCCCGTAAAAATGATATATGTGATTGAGAACGATAAAGG GTTGTCCGTTTTTCACCTTGACGTGTCTCAGACGTTCGTGCAAGCGTCCC AAGAGGAAACAATATATATGCGCCTTCCCCCCAGTTACGGTGAACTCTCG AGTAAAGTCGTGAAGCTCCTAAAGTGCCAGTATGATCTTAAGCAAACCGA CAGGGAGTGGTGTTTGCTCTTAGTAACGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig57556:1246..1626+

>mRNA_H-elongata_contig57556.13226.1 ID=mRNA_H-elongata_contig57556.13226.1|Name=mRNA_H-elongata_contig57556.13226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig57556:1246..1626+ (Himanthalia elongata Himel1 dioecious)
CCAAAAGGTCGGACGGTTGGCGGGTCTCGATGGGCGCACCCGTACAAGGG
TGTTGGACATGAAAATTGCTTGAAAACAAGACCCAGAATGGTTGCGAAAG
GGTTCACTCAAGTCCAGGATGTAGAATATCACGAGACAACGTCCCCCACA
CCCGCATTAGTGCCCGTAAAAATGATATATGTGATTGAGAACGATAAAGG
GTTGTCCGTTTTTCACCTTGACGTGTCTCAGACGTTCGTGCAAGCGTCCC
AAGAGGAAACAATATATATGCGCCTTCCCCCCAGTTACGGTGAACTCTCG
AGTAAAGTCGTGAAGCTCCTAAAGTGCCAGTATGATCTTAAGCAAACCGA
CAGGGAGTGGTGTTTGCTCTTAGTAACGTAGCCAAAAGGTCGGACGGTTG
GCGGGTCTCGATGGGCGCACCCGTACAAGGGTGTTGGACATGAAAATTGC
TTGAAAACAAGACCCAGAATGGTTGCGAAAGGGTTCACTCAAGTCCAGGA
TGTAGAATATCACGAGACAACGTCCCCCACACCCGCATTAGTGCCCGTAA
AAATGATATATGTGATTGAGAACGATAAAGGGTTGTCCGTTTTTCACCTT
GACGTGTCTCAGACGTTCGTGCAAGCGTCCCAAGAGGAAACAATATATAT
GCGCCTTCCCCCCAGTTACGGTGAACTCTCGAGTAAAGTCGTGAAGCTCC
TAAAGTGCCAGTATGATCTTAAGCAAACCGACAGGGAGTGGTGTTTGCTC
TTAGTAACGTAG
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