mRNA_H-elongata_contig57206.13177.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57206.13177.1
Unique NamemRNA_H-elongata_contig57206.13177.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: D7FPP6_ECTSI (CSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 RPEAEMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTAAR 174
            RPEA  ++EQGRVCS+K+SFGFVRCMDRPGD+FFH+TEAP +I VGDEV+F +G   R
Sbjct:  152 RPEASGEREQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDFFIGMGNR 209
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.730e-20
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 RPEAEMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTAAR 174
            RPEA  ++EQGRVCS+K+SFGFVRCMDRPGD+FFH+TEAP +I VGDEV+F +G   R
Sbjct:  151 RPEAGGEREQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDFFIGMGNR 208
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A7S2SQY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.710e-15
Identity = 31/51 (60.78%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   16 MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTA 168
            + +E G+V S+K+ FGF+RC+ RPGD+FFH++EAP DI+VGDEVEF+V T+
Sbjct:   24 LARECGKVKSLKEKFGFIRCVGRPGDLFFHISEAPRDIEVGDEVEFAVDTS 74
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A5D6XH35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH35_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   13 EMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTAARYS 180
            E+ +EQG V ++K+SFGFV CMDR GD+FFH+TEAP D+++ DEVEF V    R S
Sbjct:  145 ELPKEQGVVIAIKESFGFVSCMDRDGDLFFHITEAPVDVQLHDEVEFRVKFNQRSS 200
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: K3WP78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP78_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 2.680e-12
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 RPEAEMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 159
            R   E+  E+G V S+K+SFGFV C+DR GD+FFH+TEAP D+++ DEVEF +
Sbjct:  166 RQHVELPVEKGIVVSIKESFGFVSCVDREGDLFFHITEAPVDVQLQDEVEFRI 218
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A3F2RIS8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIS8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.670e-12
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   25 EQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 159
            EQG V S+KDSFGFV CM+R GD+FFH++EAP D+++ DEVEF +
Sbjct:  186 EQGFVVSIKDSFGFVSCMEREGDLFFHISEAPVDVQLQDEVEFRI 230
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: W2QJD1_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QJD1_PHYPN)

HSP 1 Score: 68.6 bits (166), Expect = 4.990e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   13 EMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 159
            EM  EQG + S+K++FGFV CM+R GD+FFH++EAP D+++ DEVEF V
Sbjct:  165 EMPVEQGFIVSIKENFGFVSCMERDGDLFFHISEAPVDVQLQDEVEFRV 213
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A662X4D1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4D1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.000e-12
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 RPEAEMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 159
            R   +M  E+G V S+K++FGFV CM+R GD+FFH+TEAP D+++ DEVEF V
Sbjct:  285 REHTQMPVERGFVVSIKENFGFVSCMEREGDLFFHITEAPVDVQLQDEVEFRV 337
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A2D4C5D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5D1_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 5.020e-12
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   13 EMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 159
            E+  E+G V S+KD+FGF+ C+DR GDIFFH++EAP D+ + DEVEF V
Sbjct: 1640 ELPVERGSVVSIKDNFGFISCVDREGDIFFHISEAPVDVALDDEVEFRV 1688
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BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A225W3C0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W3C0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.830e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   13 EMKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 159
            +M  +QG V S+KD+FGFV CM+R GD+FFH++EAP D+++ DEVEF V
Sbjct:  152 DMPVDQGFVVSIKDNFGFVSCMEREGDLFFHISEAPVDVQLQDEVEFRV 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP6_ECTSI1.460e-2070.69CSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4Q3_9PHAE2.730e-2070.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SQY9_9STRA5.710e-1560.78Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5D6XH35_9STRA2.200e-1358.93Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
K3WP78_GLOUD2.680e-1256.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3F2RIS8_9STRA3.670e-1264.44Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
W2QJD1_PHYPN4.990e-1259.18Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A662X4D1_9STRA5.000e-1256.60Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2D4C5D1_PYTIN5.020e-1259.18Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A225W3C0_9STRA6.830e-1259.18Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57206contigH-elongata_contig57206:1282..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog2880.D7FPP6
Preferred nameCSDE1
KEGG koko:K19721
KEGG Pathwayko04974,map04974
GOsGO:0000003,GO:0000956,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0007275,GO:0007548,GO:0007549,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009047,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0040029,GO:0042714,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046483,GO:0046546,GO:0046661,GO:0046700,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070937,GO:0070966,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, no-go decay
EggNOG OGs28K4H@1,2QSJ1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size168
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.1576483-UTR-H-elongata_contig57206:1281..12961622930929.1576483-UTR-H-elongata_contig57206:1281..1296Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57206 1282..1296 +
1691679628.8506737-UTR-H-elongata_contig57206:1281..12961691679628.8506737-UTR-H-elongata_contig57206:1281..1296Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57206 1282..1296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.189858-CDS-H-elongata_contig57206:1296..14641622930929.189858-CDS-H-elongata_contig57206:1296..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57206 1297..1464 +
1691679628.864579-CDS-H-elongata_contig57206:1296..14641691679628.864579-CDS-H-elongata_contig57206:1296..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57206 1297..1464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57206.13177.1prot_H-elongata_contig57206.13177.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57206 1297..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57206.13177.1

>prot_H-elongata_contig57206.13177.1 ID=prot_H-elongata_contig57206.13177.1|Name=mRNA_H-elongata_contig57206.13177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGT
AARYS*
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mRNA from alignment at H-elongata_contig57206:1282..1464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57206.13177.1 ID=mRNA_H-elongata_contig57206.13177.1|Name=mRNA_H-elongata_contig57206.13177.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig57206:1282..1464+ (Himanthalia elongata Himel1 dioecious)
AGACCGGAAGCTGAGATGAAGCAAGAACAGGGGCGCGTGTGTTCCATGAA
AGACTCGTTCGGCTTCGTCCGCTGCATGGATCGACCGGGTGACATTTTCT
TCCACGTGACGGAAGCTCCTTCGGACATCAAAGTCGGTGACGAAGTGGAA
TTTTCGGTCGGCACCGCTGCCAGGTACTCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig57206:1282..1464+

>mRNA_H-elongata_contig57206.13177.1 ID=mRNA_H-elongata_contig57206.13177.1|Name=mRNA_H-elongata_contig57206.13177.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig57206:1282..1464+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCAAGAACAGGGGCGCGTGTGTTCCATGAAAGACTCGTTCGGCTT
CGTCCGCTGCATGGATCGACCGGGTGACATTTTCTTCCACGTGACGGAAG
CTCCTTCGGACATCAAAGTCGGTGACGAAGTGGAATTTTCGGTCGGCACC
GCTGCCAGGTACTCTTAAATGAAGCAAGAACAGGGGCGCGTGTGTTCCAT
GAAAGACTCGTTCGGCTTCGTCCGCTGCATGGATCGACCGGGTGACATTT
TCTTCCACGTGACGGAAGCTCCTTCGGACATCAAAGTCGGTGACGAAGTG
GAATTTTCGGTCGGCACCGCTGCCAGGTACTCTTAA
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