prot_H-elongata_contig57206.13177.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57206.13177.1
Unique Nameprot_H-elongata_contig57206.13177.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length56
Homology
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: D7FPP6_ECTSI (CSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP6_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-18
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    2 KQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTAAR 53
            ++EQGRVCS+K+SFGFVRCMDRPGD+FFH+TEAP +I VGDEV+F +G   R
Sbjct:  158 EREQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDFFIGMGNR 209          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-18
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    2 KQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTAAR 53
            ++EQGRVCS+K+SFGFVRCMDRPGD+FFH+TEAP +I VGDEV+F +G   R
Sbjct:  157 EREQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDFFIGMGNR 208          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A7S2SQY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.310e-15
Identity = 31/51 (60.78%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    1 MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTA 51
            + +E G+V S+K+ FGF+RC+ RPGD+FFH++EAP DI+VGDEVEF+V T+
Sbjct:   24 LARECGKVKSLKEKFGFIRCVGRPGDLFFHISEAPRDIEVGDEVEFAVDTS 74          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A5D6XH35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH35_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.170e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0
Query:    1 MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGTAARYS 55
            + +EQG V ++K+SFGFV CMDR GD+FFH+TEAP D+++ DEVEF V    R S
Sbjct:  146 LPKEQGVVIAIKESFGFVSCMDRDGDLFFHITEAPVDVQLHDEVEFRVKFNQRSS 200          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A3F2RIS8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIS8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.950e-12
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    4 EQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 48
            EQG V S+KDSFGFV CM+R GD+FFH++EAP D+++ DEVEF +
Sbjct:  186 EQGFVVSIKDSFGFVSCMEREGDLFFHISEAPVDVQLQDEVEFRI 230          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A225W3C0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W3C0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.510e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 48
            M  +QG V S+KD+FGFV CM+R GD+FFH++EAP D+++ DEVEF V
Sbjct:  153 MPVDQGFVVSIKDNFGFVSCMEREGDLFFHISEAPVDVQLQDEVEFRV 200          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: K3WP78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP78_GLOUD)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    4 EQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 48
            E+G V S+K+SFGFV C+DR GD+FFH+TEAP D+++ DEVEF +
Sbjct:  174 EKGIVVSIKESFGFVSCVDREGDLFFHITEAPVDVQLQDEVEFRI 218          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A662X4D1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4D1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 48
            M  E+G V S+K++FGFV CM+R GD+FFH+TEAP D+++ DEVEF V
Sbjct:  290 MPVERGFVVSIKENFGFVSCMEREGDLFFHITEAPVDVQLQDEVEFRV 337          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A2D4C5D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5D1_PYTIN)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    4 EQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 48
            E+G V S+KD+FGF+ C+DR GDIFFH++EAP D+ + DEVEF V
Sbjct: 1644 ERGSVVSIKDNFGFISCVDREGDIFFHISEAPVDVALDDEVEFRV 1688          
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Match: A0A8K1FLP7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLP7_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSV 48
            M  E+G V S++D+FGFV C+DR GDIFFH++EAP D+++ DEVEF V
Sbjct:  184 MPTERGVVVSVRDNFGFVSCVDREGDIFFHMSEAPVDVELQDEVEFKV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57206.13177.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP6_ECTSI1.260e-1871.15CSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4Q3_9PHAE1.260e-1871.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SQY9_9STRA3.310e-1560.78Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5D6XH35_9STRA6.170e-1358.18Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A3F2RIS8_9STRA2.950e-1264.44Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A225W3C0_9STRA7.510e-1260.42Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
K3WP78_GLOUD1.030e-1162.22Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662X4D1_9STRA1.030e-1160.42Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2D4C5D1_PYTIN1.030e-1162.22Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FLP7_PYTOL1.400e-1160.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 5..50
e-value: 3.6E-9
score: 36.3
NoneNo IPR availableGENE3D2.40.50.140coord: 3..55
e-value: 1.4E-17
score: 65.2
NoneNo IPR availablePANTHERPTHR12913UNR PROTEIN N-RAS UPSTREAM GENE PROTEINcoord: 2..50
NoneNo IPR availablePROSITEPS51857CSD_2coord: 3..55
score: 14.914
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57206contigH-elongata_contig57206:1297..1464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57206.13177.1mRNA_H-elongata_contig57206.13177.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57206 1282..1464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57206.13177.1 ID=prot_H-elongata_contig57206.13177.1|Name=mRNA_H-elongata_contig57206.13177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MKQEQGRVCSMKDSFGFVRCMDRPGDIFFHVTEAPSDIKVGDEVEFSVGT
AARYS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR012340NA-bd_OB-fold