mRNA_H-elongata_contig5684.13135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5684.13135.1
Unique NamemRNA_H-elongata_contig5684.13135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5684.13135.1 vs. uniprot
Match: D7G5R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.290e-51
Identity = 106/223 (47.53%), Postives = 139/223 (62.33%), Query Frame = 1 
Query:    1 QVSWGVKPNTYGWDAPPLAFITMPKGERDAPNDPDDR-APNVFGNSRKIPPRITAIAHHVRKGGGKPRMLLVPLGELSIYRAFFSDRVYEISEEQSAHLHAALLEAFAMECDPENIIDDEMECFLSVDPRTAPLILETLVAAYQASTSVQTGSTDGNA------GISSDDEAVHPEVELVG------------QGLENDGVSRGTLTEE-------HATEVFR 591
            QVSWGV P++YG   PP+AF+ MPKG+     + D +  P VFGNSRKIPP+I++IAH+VR+ GGKPRMLL+PLGEL++YRAFFSDRV+E+S  QS  LHAAL+ +  ++C    I+  E +CFL  DPRT+PL L+TLVAAY+ S +  T S  G A       +++D  A      L G              ++ND    G  +EE       HATEVFR
Sbjct:  222 QVSWGVPPSSYGSGTPPIAFMPMPKGKEVDQGETDAKNVPQVFGNSRKIPPQISSIAHYVRRSGGKPRMLLLPLGELAVYRAFFSDRVFEVSPTQSEKLHAALVASSMLDCSTGRIVAGEKQCFLVQDPRTSPLALDTLVAAYEESLARSTTSASGAAIAVNDTSLAADSGAPQLSTRLQGGXXXXXXXXXXXXXVQNDPRFLGAASEETPFMTTAHATEVFR 444
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BLAST of mRNA_H-elongata_contig5684.13135.1 vs. uniprot
Match: A0A6H5JTX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX7_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.600e-40
Identity = 96/223 (43.05%), Postives = 123/223 (55.16%), Query Frame = 1 
Query:    1 QVSWGVKPNTYGWDAPPLAFITMPKGERDAPNDPDDR-APNVFGNSRKIPPRITAIAHHVRKGGGKPRMLLVPLGELSIYRAFFSDRVYEISEEQSAHLHAALLEAFAMECDPENIIDDEMECFLSVDPRTAPLILETLVAAYQASTSVQTGSTDGNA------GISSDDEAVH------------PEVELVGQGLENDGVSRGTLTEE-------HATEVFR 591
            QVSWG  P++YG   PP+AF+ MPKGE     + D +  P VFGNSRKIPP+I++IAH VR+ GGKPRMLL+PLGEL++YRAFFSDRV+E+   Q +                      E  CFL  DPR +PL L+TLV AY+ S +  T S+ G A       +++D  A              P  +  G G +ND    G  +EE       HATEVFR
Sbjct:  283 QVSWGAPPSSYGAGTPPIAFMPMPKGEEVDQGETDAKNVPQVFGNSRKIPPQISSIAHSVRRSGGKPRMLLLPLGELAVYRAFFSDRVFEVGVCQCS---------------------GERRCFLVQDPRMSPLALDTLVTAYEESLARTTSSSSGAAIAVNDTSLAADSGAPQLSTRLEGGGAPLPSAQQQGGGFQNDPRFLGAASEETPLMTTAHATEVFR 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5684.13135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5R7_ECTSI2.290e-5147.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTX7_9PHAE5.600e-4043.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5684contigH-elongata_contig5684:116..2908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_008860.1
Hectar predicted targeting categoryother localisation
Exons5
Model size702
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5684.13135.1prot_H-elongata_contig5684.13135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5684 116..2908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.827681-CDS-H-elongata_contig5684:115..1901622930923.827681-CDS-H-elongata_contig5684:115..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 116..190 +
1691679626.665621-CDS-H-elongata_contig5684:115..1901691679626.665621-CDS-H-elongata_contig5684:115..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 116..190 +
1622930923.856912-CDS-H-elongata_contig5684:517..7091622930923.856912-CDS-H-elongata_contig5684:517..709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 518..709 +
1691679626.676652-CDS-H-elongata_contig5684:517..7091691679626.676652-CDS-H-elongata_contig5684:517..709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 518..709 +
1622930923.8741007-CDS-H-elongata_contig5684:1114..11961622930923.8741007-CDS-H-elongata_contig5684:1114..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 1115..1196 +
1691679626.6874475-CDS-H-elongata_contig5684:1114..11961691679626.6874475-CDS-H-elongata_contig5684:1114..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 1115..1196 +
1622930923.8992572-CDS-H-elongata_contig5684:1991..22331622930923.8992572-CDS-H-elongata_contig5684:1991..2233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 1992..2233 +
1691679626.7026873-CDS-H-elongata_contig5684:1991..22331691679626.7026873-CDS-H-elongata_contig5684:1991..2233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 1992..2233 +
1622930923.9313374-CDS-H-elongata_contig5684:2797..29081622930923.9313374-CDS-H-elongata_contig5684:2797..2908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 2798..2908 +
1691679626.7213936-CDS-H-elongata_contig5684:2797..29081691679626.7213936-CDS-H-elongata_contig5684:2797..2908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5684 2798..2908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5684.13135.1

>prot_H-elongata_contig5684.13135.1 ID=prot_H-elongata_contig5684.13135.1|Name=mRNA_H-elongata_contig5684.13135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
QVSWGVKPNTYGWDAPPLAFITMPKGERDAPNDPDDRAPNVFGNSRKIPP
RITAIAHHVRKGGGKPRMLLVPLGELSIYRAFFSDRVYEISEEQSAHLHA
ALLEAFAMECDPENIIDDEMECFLSVDPRTAPLILETLVAAYQASTSVQT
GSTDGNAGISSDDEAVHPEVELVGQGLENDGVSRGTLTEEHATEVFRELL
NVAWGEHELSADLVGLWESWMWRSCGYRCTPGP*
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mRNA from alignment at H-elongata_contig5684:116..2908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5684.13135.1 ID=mRNA_H-elongata_contig5684.13135.1|Name=mRNA_H-elongata_contig5684.13135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2793bp|location=Sequence derived from alignment at H-elongata_contig5684:116..2908+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTCGTGGGGGGTGAAACCGAACACGTACGGGTGGGACGCTCCTCC
TCTAGCTTTCATCACGATGCCAAAGGTGGGTTGTACCATACGGAGAGGGC
AAAGGTAGATAGCGGGTGCCCCTCCGCTTATCCTGTTGTGGATTATAATC
TGGCCATGTCATAGTCCACCGTTTTGTTGATGGAATAGTCTGCATTTCCT
ATAGTCCAGCCTTTCCGGATATTTTACACAAACACCCTCTTCTCTCATAT
ATTTTGTCTTTTGTGTCTGTTTGTATGTGTGTATGTTTTTCCCCTGCCCC
TCGTTTCCTCTATCTCACACGAAAACCTCTTTATTTATCGTTTTTGTGCG
GCAACGCGGCTCGGATTGGATCTGATCTGATTCTGTCGGGCCCCGGGGAA
AGGGCGAGCGCGATGCCCCCAATGACCCTGACGACAGAGCGCCGAATGTT
TTTGGCAACTCCCGAAAGATCCCTCCGAGAATAACGGCCATCGCACACCA
CGTGCGAAAGGGCGGGGGCAAACCGCGAATGCTGCTGGTGCCGCTCGGGG
AGTTGTCGATTTATCGGGCATTCTTCTCCGACAGGGTTTATGAGGTGAGA
ATCCCACCGGGTTGAAACATCGTGGGAGACGCTCCGTTTGGGATGTAGGA
CGTTGGTACGGGAGAATGACGGTTGAGGGTAATGGTTTTGAGTGACTCAC
AAGCTTCGCGAGAGCTTGTCTCCGTGGACATTGACGGCAGAGGAGTTTTA
TGGCGAAAGGCAGGCATGTGTCCACAAGCGAAAGCCTGTGTGGTGTGTGC
GTATTTTTCAGGGGGAGAACCGTCTTCTTCGGGTGTACGCTTCCGCAACA
CGAACATCTAACGAAAACATTGCTACAAACATGACTCAGGCGCAGCGATC
GGAACACGTTCGAAGCTATGCTATAGCCGTAGCCGACGACCCCGCCTAAT
CCGGTTCGTGGTCCAAACCTTGGCTGTTCCGTTGCCGACTTGCCGACAGA
TCTCCGAGGAGCAGTCCGCCCACTTACACGCCGCTCTACTAGAGGCTTTC
GCCATGGAGTGTGACCCCGAGAATATCATCGGTAAGTCTTTCTATCTCAA
TTTAACGGGGTTGGGTTTGGGGGCCACACGTTCCCTGTCCCTGTTCCCTC
GGTGTCTTTTTTGCCGAACCAAAGCTGGGGACGATCTTTATGAGGTGGGT
ACCGTGGGTGGCAGTTGATGTTTTCAAACCCCTCTCCTTCGCGGTTCAAA
CGGGTAATGAGGCGTTACTGTTAATCTACTGAACTATAAACTGTCTTGAG
CCATGCCACTGCTCCCAGAAGAATGCTTTTGTTTCATAATACATTAAGGA
TTGATAATACGAGTACTGTATAGTATCTAACGACGAGTGTTTCGCGTTTT
AGTACACATTCTTCCTCTATTTATTTTTCTACTTCTTTTTTCCACCGCCT
ACAGAACCGTGTTACCAATCACGGCCCAACCCAGCCGTCCGTATCGTAGA
TGTACAGGTAGTCTTGAACTCCCAGATAGAACCAAAGGGGTTCCGTCACG
GGCTATTCGTGTTCATCTTCTCCAGAGAGGTTGTTGTTATTGTTGTTGGT
CACACATTTAGCAGTATAGTATAGTAAGGTCAACCGGATTTGGTTGCCTT
CTGCTCGTGGTCAGCTGAACAGGGAAAATAATTTTCCCCTGTCCCCGTTC
GAGCCTGAGATTTTGGTCTCGCAAGACGGGTTCAGCACTCCCGTCCCGTA
GGGGTTTGTCGTCGATACGGTGCGTGTACTGTCTGCTTCCCTCTCCCCAC
GTTTAAGAAAGGACAACATCCTCACAACATCCCCAGCCTTATCGTGGATA
TCTATCATGGGTGTCCCGCTTTGCAGATGACGAGATGGAGTGCTTTTTGT
CGGTCGACCCGCGGACGGCGCCTCTTATTTTGGAAACCCTGGTTGCGGCG
TACCAAGCCTCCACTTCCGTCCAGACCGGGTCGACGGACGGAAATGCCGG
GATTTCTAGTGATGACGAGGCGGTGCATCCAGAGGTAGAGCTGGTAGGCC
AAGGGCTAGAGAATGACGGTGTATCAAGAGGTACTTTGACTGAAGAGCAC
GCGACGGAGGTTTTCCGGGTGAGAGGAGGCGGTAGCAGGCGTAACTTACG
GCATTAATCATGTTAAACAAACAATGCTGTTTTGAGCTCGATATAAAGCG
TGACGTATGACGTATGAAAGAAAAGAGTATGTGTGTGTAATTGTGTGTTT
GTACATTGTGAAAAACAAAGAGCTCTGAAATTGAGTGAGGTCCGCTGCTC
GTTACGTGAAACCAAACTACAGCGGCGCGCGTCCATTATCGGTGCGACTT
GAATTATACCATCATGCTGTACCGCCGATAGATAAAATTTCATTCCCTCC
CCTACTGGGTGTACGCGTCTAAAATTACGGTTTCTGCGTGAGAAGCGGTA
CGGTGCTGATTTTTGTAGTCAGATTTTTCACGCTACCTTCGTGCTAACTA
CCACACACCATGTTCGCGTTCTTTACGTATGTACGGTGCGGCGTCCGCTT
CTTACCTCTAGCTTATCGGGGGACTGGACTGTCAGTTGCACCCCCCACCA
CCAAAAAAATAACTTACCATTCTCAAAGAGCGCTCGTGTGGAACCCATGG
CGTATTGTTCTATCTATATTTCGTGGTGGCAGGAGCTGCTCAACGTTGCC
TGGGGCGAGCACGAGCTTAGCGCCGATCTCGTGGGCCTCTGGGAGTCCTG
GATGTGGAGATCCTGTGGATACCGATGCACGCCCGGCCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig5684:116..2908+

>mRNA_H-elongata_contig5684.13135.1 ID=mRNA_H-elongata_contig5684.13135.1|Name=mRNA_H-elongata_contig5684.13135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig5684:116..2908+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTCGTGGGGGGTGAAACCGAACACGTACGGGTGGGACGCTCCTCC
TCTAGCTTTCATCACGATGCCAAAGCAGGTTTCGTGGGGGGTGAAACCGA
ACACGTACGGGTGGGACGCTCCTCCTCTAGCTTTCATCACGATGCCAAAG
GGCGAGCGCGATGCCCCCAATGACCCTGACGACAGAGCGCCGAATGTTTT
TGGCAACTCCCGAAAGATCCCTCCGAGAATAACGGCCATCGCACACCACG
TGCGAAAGGGCGGGGGCAAACCGCGAATGCTGCTGGTGCCGCTCGGGGAG
TTGTCGATTTATCGGGCATTCTTCTCCGACAGGGTTTATGAGGGCGAGCG
CGATGCCCCCAATGACCCTGACGACAGAGCGCCGAATGTTTTTGGCAACT
CCCGAAAGATCCCTCCGAGAATAACGGCCATCGCACACCACGTGCGAAAG
GGCGGGGGCAAACCGCGAATGCTGCTGGTGCCGCTCGGGGAGTTGTCGAT
TTATCGGGCATTCTTCTCCGACAGGGTTTATGAGATCTCCGAGGAGCAGT
CCGCCCACTTACACGCCGCTCTACTAGAGGCTTTCGCCATGGAGTGTGAC
CCCGAGAATATCATCGATCTCCGAGGAGCAGTCCGCCCACTTACACGCCG
CTCTACTAGAGGCTTTCGCCATGGAGTGTGACCCCGAGAATATCATCGAT
GACGAGATGGAGTGCTTTTTGTCGGTCGACCCGCGGACGGCGCCTCTTAT
TTTGGAAACCCTGGTTGCGGCGTACCAAGCCTCCACTTCCGTCCAGACCG
GGTCGACGGACGGAAATGCCGGGATTTCTAGTGATGACGAGGCGGTGCAT
CCAGAGGTAGAGCTGGTAGGCCAAGGGCTAGAGAATGACGGTGTATCAAG
AGGTACTTTGACTGAAGAGCACGCGACGGAGGTTTTCCGGATGACGAGAT
GGAGTGCTTTTTGTCGGTCGACCCGCGGACGGCGCCTCTTATTTTGGAAA
CCCTGGTTGCGGCGTACCAAGCCTCCACTTCCGTCCAGACCGGGTCGACG
GACGGAAATGCCGGGATTTCTAGTGATGACGAGGCGGTGCATCCAGAGGT
AGAGCTGGTAGGCCAAGGGCTAGAGAATGACGGTGTATCAAGAGGTACTT
TGACTGAAGAGCACGCGACGGAGGTTTTCCGGGAGCTGCTCAACGTTGCC
TGGGGCGAGCACGAGCTTAGCGCCGATCTCGTGGGCCTCTGGGAGTCCTG
GATGTGGAGATCCTGTGGATACCGATGCACGCCCGGCCCATGAGAGCTGC
TCAACGTTGCCTGGGGCGAGCACGAGCTTAGCGCCGATCTCGTGGGCCTC
TGGGAGTCCTGGATGTGGAGATCCTGTGGATACCGATGCACGCCCGGCCC
ATGA
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