mRNA_H-elongata_contig116768.1313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116768.1313.1
Unique NamemRNA_H-elongata_contig116768.1313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: D7G378_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G378_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.780e-31
Identity = 54/75 (72.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            +S++V EMA KHMP TW FLPE++RDDI+LKALED P+FMRSFM ++KTN+DDVLD+HHMV++NLVK+K+LMNRV
Sbjct:  192 VSRVVTEMAAKHMPGTWHFLPEASRDDIVLKALEDVPIFMRSFMGEVKTNIDDVLDVHHMVITNLVKNKALMNRV 266          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A7S2SNZ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNZ7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.910e-14
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPE-TWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            +SKIV E+A K +P   W   P+S +++ +LKAL++AP F+ +FM D+K N++   D+ HMVV+N+VK+K L+N+V
Sbjct:  116 MSKIVHEIAAKWLPPGVWARTPKSVQEETVLKALDEAPRFLSTFMNDIKDNIETYFDLKHMVVTNMVKNKGLLNKV 191          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A6A7MHM2_9ACTN (DUF445 family protein n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A6A7MHM2_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 3.920e-11
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            +  I  E+A  + P  W  LPE+ R  +I +  +DAP  +   + D++ NV++VLDI  M+V+NLV+DK L+NR+
Sbjct:   84 VDDITREVASTYQPGLWESLPEAARRMLIRRVQDDAPALVEQVVGDIRRNVENVLDIKSMIVTNLVRDKELLNRI 158          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A076MZE4_AMYME (Uncharacterized protein n=9 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A076MZE4_AMYME)

HSP 1 Score: 66.2 bits (160), Expect = 5.490e-11
Identity = 27/75 (36.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            + +I EE+ E++ P  W  LP   ++ ++ +   +AP  +   M ++  N++DVLD+ +MV++NLV+DKSL+NR+
Sbjct:  104 VEEITEEVMEQYQPRLWEALPSGAKELLLRRVQAEAPKVIAKIMRELSDNIEDVLDLKNMVITNLVRDKSLLNRL 178          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: I8T8R4_9GAMM (Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I8T8R4_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 5.510e-11
Identity = 27/75 (36.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            + +I EE+AE++ P  W  LP+  +  I+ +  +D P  +   MT+++ ++D++ D+ HM+V NLV+DK L+NR+
Sbjct:  111 MERISEEIAERYKPGIWYALPDFAKRRIVERVKDDVPQTVERIMTELREHIDELFDVKHMIVGNLVRDKHLLNRI 185          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A346N0S6_9GAMM (DUF445 family protein n=2 Tax=Solimonas TaxID=413435 RepID=A0A346N0S6_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 5.520e-11
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            +  I  E+AE++ P  W   PE+ +  II +  E+AP  ++  M D+K N++ V D+  MVVSNL++DK L+NR+
Sbjct:  106 VEDITREVAEQYAPGLWEAAPEAVKRMIISRIQEEAPEIVKQIMLDIKANINSVFDLKDMVVSNLLRDKPLLNRI 180          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A1H9EWY6_9GAMM (Uncharacterized membrane protein YheB, UPF0754 family n=1 Tax=Solimonas aquatica TaxID=489703 RepID=A0A1H9EWY6_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 7.500e-11
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            + +I  E+AE++ P  W  LPE  R  II +   D P  +   M +++  +D + D+ HMVVSNLV+DK L+NR+
Sbjct:  104 MERITHEVAERYQPGLWATLPEFMRRKIIARVQADMPNTIEQIMGEIRARIDQLFDLKHMVVSNLVRDKQLLNRI 178          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A660CJ92_9PSEU (Uncharacterized protein n=1 Tax=Prauserella rugosa TaxID=43354 RepID=A0A660CJ92_9PSEU)

HSP 1 Score: 65.9 bits (159), Expect = 7.550e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            I +IV E+AE++ P  W  LPE  R  ++ +   +AP  + +    +K +VD V D+  MVV+NLVKDKSL+NR+
Sbjct:  110 IGEIVVEVAERYQPGLWERLPERARKLVVRRVQNEAPRMVAAVTEQIKADVDSVFDLKDMVVTNLVKDKSLLNRI 184          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: UPI001C327E10 (Uncharacterized protein n=2 Tax=Amycolatopsis sp. CA-230715 TaxID=2745196 RepID=UPI001C327E10)

HSP 1 Score: 65.5 bits (158), Expect = 1.030e-10
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            +  +  E+ E++ P  W  LP   +  ++ +   +AP  +   M D+  N+DDVLD+ HMV++NLV+DK+L+NR+
Sbjct:  102 VEDVTREVMEQYQPRLWEVLPNGAQQLLLKRVQAEAPRAIAKIMRDIADNIDDVLDLKHMVITNLVRDKALLNRL 176          
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A522ZM23_9GAMM (DUF445 domain-containing protein n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A522ZM23_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 1.040e-10
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
            + +I  E+A  + P  W   PES +  II +  ++AP  ++  M D+K+N+D V D+  MVV+NL++DK L+NR+
Sbjct:  104 VEQITREVAAHYSPGLWESAPESVKGMIIRRIQKEAPEIVKQIMVDIKSNIDSVFDLKDMVVTNLLRDKPLLNRI 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G378_ECTSI2.780e-3172.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SNZ7_9STRA2.910e-1446.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A7MHM2_9ACTN3.920e-1140.00DUF445 family protein n=1 Tax=Propionibacteriales ... [more]
A0A076MZE4_AMYME5.490e-1136.00Uncharacterized protein n=9 Tax=Pseudonocardiaceae... [more]
I8T8R4_9GAMM5.510e-1136.00Uncharacterized protein n=1 Tax=Hydrocarboniphaga ... [more]
A0A346N0S6_9GAMM5.520e-1140.00DUF445 family protein n=2 Tax=Solimonas TaxID=4134... [more]
A0A1H9EWY6_9GAMM7.500e-1140.00Uncharacterized membrane protein YheB, UPF0754 fam... [more]
A0A660CJ92_9PSEU7.550e-1142.67Uncharacterized protein n=1 Tax=Prauserella rugosa... [more]
UPI001C327E101.030e-1036.00Uncharacterized protein n=2 Tax=Amycolatopsis sp. ... [more]
A0A522ZM23_9GAMM1.040e-1038.67DUF445 domain-containing protein n=1 Tax=Sinobacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116768contigH-elongata_contig116768:1551..1775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue4.2e-24
Seed eggNOG ortholog2880.D7G378
EggNOG OGs28M2H@1,2QTJ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_004840.1
Exons1
Model size225
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.2627838-CDS-H-elongata_contig116768:1550..17541622929679.2627838-CDS-H-elongata_contig116768:1550..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116768 1551..1754 -
1691679116.6728768-CDS-H-elongata_contig116768:1550..17541691679116.6728768-CDS-H-elongata_contig116768:1550..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116768 1551..1754 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.2816353-UTR-H-elongata_contig116768:1754..17751622929679.2816353-UTR-H-elongata_contig116768:1754..1775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116768 1755..1775 -
1691679116.6841738-UTR-H-elongata_contig116768:1754..17751691679116.6841738-UTR-H-elongata_contig116768:1754..1775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116768 1755..1775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116768.1313.1prot_H-elongata_contig116768.1313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116768 1551..1754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116768.1313.1

>prot_H-elongata_contig116768.1313.1 ID=prot_H-elongata_contig116768.1313.1|Name=mRNA_H-elongata_contig116768.1313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDI
HHMVVSNLVKDKSLMNRV
back to top

mRNA from alignment at H-elongata_contig116768:1551..1775-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116768.1313.1 ID=mRNA_H-elongata_contig116768.1313.1|Name=mRNA_H-elongata_contig116768.1313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig116768:1551..1775- (Himanthalia elongata Himel1 dioecious)
ATCAGCAAGATCGTGGAGGAGATGGCGGAGAAGCACATGCCGGAGACGTG GCGTTTCTTGCCGGAGTCAACCCGGGACGACATCATCCTCAAGGCCCTCG AGGATGCCCCCGTCTTCATGCGGTCCTTCATGACGGACATGAAGACCAAC GTCGACGACGTCCTCGACATCCACCACATGGTGGTGTCTAATCTTGTCAA GGACAAGTCCCTCATGAACAGGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig116768:1551..1775-

>mRNA_H-elongata_contig116768.1313.1 ID=mRNA_H-elongata_contig116768.1313.1|Name=mRNA_H-elongata_contig116768.1313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig116768:1551..1775- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGAAGCACATGCCGGAGACGTGGCGTTTCTTGCCGGAGTCAAC
CCGGGACGACATCATCCTCAAGGCCCTCGAGGATGCCCCCGTCTTCATGC
GGTCCTTCATGACGGACATGAAGACCAACGTCGACGACGTCCTCGACATC
CACCACATGGTGGTGTCTAATCTTGTCAAGGACAAGTCCCTCATGAACAG
GGTAATGGCGGAGAAGCACATGCCGGAGACGTGGCGTTTCTTGCCGGAGT
CAACCCGGGACGACATCATCCTCAAGGCCCTCGAGGATGCCCCCGTCTTC
ATGCGGTCCTTCATGACGGACATGAAGACCAACGTCGACGACGTCCTCGA
CATCCACCACATGGTGGTGTCTAATCTTGTCAAGGACAAGTCCCTCATGA
ACAGGGTA
back to top