mRNA_H-elongata_contig116768.1313.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: D7G378_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G378_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.780e-31 Identity = 54/75 (72.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+S++V EMA KHMP TW FLPE++RDDI+LKALED P+FMRSFM ++KTN+DDVLD+HHMV++NLVK+K+LMNRV
Sbjct: 192 VSRVVTEMAAKHMPGTWHFLPEASRDDIVLKALEDVPIFMRSFMGEVKTNIDDVLDVHHMVITNLVKNKALMNRV 266
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A7S2SNZ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNZ7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.910e-14 Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPE-TWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+SKIV E+A K +P W P+S +++ +LKAL++AP F+ +FM D+K N++ D+ HMVV+N+VK+K L+N+V
Sbjct: 116 MSKIVHEIAAKWLPPGVWARTPKSVQEETVLKALDEAPRFLSTFMNDIKDNIETYFDLKHMVVTNMVKNKGLLNKV 191
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A6A7MHM2_9ACTN (DUF445 family protein n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A6A7MHM2_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 3.920e-11 Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ I E+A + P W LPE+ R +I + +DAP + + D++ NV++VLDI M+V+NLV+DK L+NR+
Sbjct: 84 VDDITREVASTYQPGLWESLPEAARRMLIRRVQDDAPALVEQVVGDIRRNVENVLDIKSMIVTNLVRDKELLNRI 158
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A076MZE4_AMYME (Uncharacterized protein n=9 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A076MZE4_AMYME) HSP 1 Score: 66.2 bits (160), Expect = 5.490e-11 Identity = 27/75 (36.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ +I EE+ E++ P W LP ++ ++ + +AP + M ++ N++DVLD+ +MV++NLV+DKSL+NR+
Sbjct: 104 VEEITEEVMEQYQPRLWEALPSGAKELLLRRVQAEAPKVIAKIMRELSDNIEDVLDLKNMVITNLVRDKSLLNRL 178
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: I8T8R4_9GAMM (Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I8T8R4_9GAMM) HSP 1 Score: 66.2 bits (160), Expect = 5.510e-11 Identity = 27/75 (36.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ +I EE+AE++ P W LP+ + I+ + +D P + MT+++ ++D++ D+ HM+V NLV+DK L+NR+
Sbjct: 111 MERISEEIAERYKPGIWYALPDFAKRRIVERVKDDVPQTVERIMTELREHIDELFDVKHMIVGNLVRDKHLLNRI 185
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A346N0S6_9GAMM (DUF445 family protein n=2 Tax=Solimonas TaxID=413435 RepID=A0A346N0S6_9GAMM) HSP 1 Score: 66.2 bits (160), Expect = 5.520e-11 Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ I E+AE++ P W PE+ + II + E+AP ++ M D+K N++ V D+ MVVSNL++DK L+NR+
Sbjct: 106 VEDITREVAEQYAPGLWEAAPEAVKRMIISRIQEEAPEIVKQIMLDIKANINSVFDLKDMVVSNLLRDKPLLNRI 180
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A1H9EWY6_9GAMM (Uncharacterized membrane protein YheB, UPF0754 family n=1 Tax=Solimonas aquatica TaxID=489703 RepID=A0A1H9EWY6_9GAMM) HSP 1 Score: 65.9 bits (159), Expect = 7.500e-11 Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ +I E+AE++ P W LPE R II + D P + M +++ +D + D+ HMVVSNLV+DK L+NR+
Sbjct: 104 MERITHEVAERYQPGLWATLPEFMRRKIIARVQADMPNTIEQIMGEIRARIDQLFDLKHMVVSNLVRDKQLLNRI 178
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A660CJ92_9PSEU (Uncharacterized protein n=1 Tax=Prauserella rugosa TaxID=43354 RepID=A0A660CJ92_9PSEU) HSP 1 Score: 65.9 bits (159), Expect = 7.550e-11 Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
I +IV E+AE++ P W LPE R ++ + +AP + + +K +VD V D+ MVV+NLVKDKSL+NR+
Sbjct: 110 IGEIVVEVAERYQPGLWERLPERARKLVVRRVQNEAPRMVAAVTEQIKADVDSVFDLKDMVVTNLVKDKSLLNRI 184
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: UPI001C327E10 (Uncharacterized protein n=2 Tax=Amycolatopsis sp. CA-230715 TaxID=2745196 RepID=UPI001C327E10) HSP 1 Score: 65.5 bits (158), Expect = 1.030e-10 Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ + E+ E++ P W LP + ++ + +AP + M D+ N+DDVLD+ HMV++NLV+DK+L+NR+
Sbjct: 102 VEDVTREVMEQYQPRLWEVLPNGAQQLLLKRVQAEAPRAIAKIMRDIADNIDDVLDLKHMVITNLVRDKALLNRL 176
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Match: A0A522ZM23_9GAMM (DUF445 domain-containing protein n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A522ZM23_9GAMM) HSP 1 Score: 65.5 bits (158), Expect = 1.040e-10 Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 ISKIVEEMAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIHHMVVSNLVKDKSLMNRV 225
+ +I E+A + P W PES + II + ++AP ++ M D+K+N+D V D+ MVV+NL++DK L+NR+
Sbjct: 104 VEQITREVAAHYSPGLWESAPESVKGMIIRRIQKEAPEIVKQIMVDIKSNIDSVFDLKDMVVTNLLRDKPLLNRI 178 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116768.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116768.1313.1 >prot_H-elongata_contig116768.1313.1 ID=prot_H-elongata_contig116768.1313.1|Name=mRNA_H-elongata_contig116768.1313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp MAEKHMPETWRFLPESTRDDIILKALEDAPVFMRSFMTDMKTNVDDVLDIback to top mRNA from alignment at H-elongata_contig116768:1551..1775- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116768.1313.1 ID=mRNA_H-elongata_contig116768.1313.1|Name=mRNA_H-elongata_contig116768.1313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig116768:1551..1775- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116768:1551..1775- >mRNA_H-elongata_contig116768.1313.1 ID=mRNA_H-elongata_contig116768.1313.1|Name=mRNA_H-elongata_contig116768.1313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig116768:1551..1775- (Himanthalia elongata Himel1 dioecious)back to top |