mRNA_H-elongata_contig56731.13123.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56731.13123.1
Unique NamemRNA_H-elongata_contig56731.13123.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.080e-12
Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 1 
Query:   94 GAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQRRPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISEVELREMP-QTLEKQR----SCNWDTDIV 450
            G   L ETA SFTG +++  FCCCSTMS VALCIK  +WM+G+R RR RV +      N   +E+++Y            +  E R G   +  SE+ELR++P   LE QR    S + D D+V
Sbjct:    9 GGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPHHQPVIILDTNSAEKRSGY-TLHASEIELRQVPFGNLEAQRETKNSDDGDDDVV 131
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BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.260e-11
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   94 GAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQRRPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISEVELREMP-QTLEKQR 423
            G   L ETA SFTG V++  FCCCSTMS VALCIK  +WM+G+R RR RV +      N   +E+++Y            +  E R G   +  SE+ELR++P   LE QR
Sbjct:    9 GGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYYPHQQPVIILDTNPAEQRSGC-TLRASEIELRQVPFGNLEAQR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCN9_9PHAE2.080e-1241.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQF6_ECTSI1.260e-1143.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56731contigH-elongata_contig56731:268..2649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006310.1
Exons2
Model size1929
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56731.13123.1prot_H-elongata_contig56731.13123.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56731 1741..2568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.45873-UTR-H-elongata_contig56731:267..17401622930922.45873-UTR-H-elongata_contig56731:267..1740Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56731 268..1740 -
1691679626.06787-UTR-H-elongata_contig56731:267..17401691679626.06787-UTR-H-elongata_contig56731:267..1740Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56731 268..1740 -
1622930922.5037374-UTR-H-elongata_contig56731:2568..26491622930922.5037374-UTR-H-elongata_contig56731:2568..2649Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56731 2569..2649 -
1691679626.0995255-UTR-H-elongata_contig56731:2568..26491691679626.0995255-UTR-H-elongata_contig56731:2568..2649Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56731 2569..2649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.476285-CDS-H-elongata_contig56731:1740..21061622930922.476285-CDS-H-elongata_contig56731:1740..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56731 1741..2106 -
1691679626.0775893-CDS-H-elongata_contig56731:1740..21061691679626.0775893-CDS-H-elongata_contig56731:1740..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56731 1741..2106 -
1622930922.4886365-CDS-H-elongata_contig56731:2559..25681622930922.4886365-CDS-H-elongata_contig56731:2559..2568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56731 2560..2568 -
1691679626.0893362-CDS-H-elongata_contig56731:2559..25681691679626.0893362-CDS-H-elongata_contig56731:2559..2568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56731 2560..2568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56731.13123.1

>prot_H-elongata_contig56731.13123.1 ID=prot_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MVKDGAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQR
RPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISE
VELREMPQTLEKQRSCNWDTDIVV*
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mRNA from alignment at H-elongata_contig56731:268..2649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56731.13123.1 ID=mRNA_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2382bp|location=Sequence derived from alignment at H-elongata_contig56731:268..2649- (Himanthalia elongata Himel1 dioecious)
CCCGAGGTGACCACCACATCCTGTGCCCTATCCCTGTCCCACCTCGCCAA
ATGCAAGACACATGCGTGATAGAACCAAGTAATGGTCAAGGTGAAACAAT
CTTTGGCTTGCGGGAGCGTTGTCGCAGCCCCCGATTTCCAATGAGATTCT
GAATCTTCGTTCCTCCTTGCTGTTTGATGCCTCGATAATTGGTACAGTGC
TTCTTTGGATATATATTCCTTTTTATTTTACGGTTACCCCCTCCGATCGC
TGTGATTATTATGGTCTCGAGCAGGACTGACCTCGAGTGTTTCAATCGTT
TTTCGCGGTGCACGGACCGGAGCGTTTCGAATCTGTATGTACGGTTAGTG
CGATATATCTGATATCAAGCTATCTAAGCGATTGCGCCTTAGCATTCAAG
GTCTCTTGTTATATACTACGTATACACTATAATACTACCCGCCGTTCTAT
AGAATCAGTGCACACTATTTTTTCTGCATTTCTCTGTTCTAAAATATCAA
TGCTTTTTCTGCTGGGTATGTTCGCATTCCTGCCCGTGACCAGGATGGAG
CTGCGGTGCTCGAGGAGACAGCGTTCTCCTTCACTGGTGCCGTCGCGCTC
AGTGCTTTCTGTTGCTGCAGTACTATGTCGTTTGTTGCGCTCTGCATAAA
GTTCATCACGTGGATGTGGGGGAACCGCCAGAGAAGACCGAGGGTGGTGA
TCCAGAATTGTTACACGCATAACGGTCACAACAGCGAACAGCGGATGTAC
GAAGTGGTCGGTGTCAACGCCACCCGCAACATCGACCATGACACTGAGCT
GCGCAAAGGTGTTGGTGCCGTAGCCATATCAGAAGTCGAACTGCGCGAAA
TGCCTCAAACCTTGGAGAAACAGCGGTCCTGTAACTGGGATACAGATATT
GTAGTTTAGAAGTGTCACTCCGACTGGATTTCTGCTGCAGCTTTCATACG
GCAGCCATGGCGCGTACAATCCCCGGGGTGCTTAGACGTACAGGTATAAG
TCAAATCGATCCTCCTTTTATTAAGCATGTAATGTATGCCATAATTGTTG
ACAGGCGGTCGAACCAGCGGCTGCACCATCGATATGATGGGCCTCGATCG
GGCTTTGTGAAAGATTTATCTCAACAACCACGTTTTTTACTATTTCCCCC
GTATTCAGGAAACAAAAAACAAAAAACGGTACGGTACACAGTACTCCGGA
ATGACGTGTCATGCCGGTTTGCGCGGTCTAATGCAAATTGAGAGAAAGGA
AAGGGGAGCGAACGTTCTTGGAAGCACAACGATCGGTGGTTGCCTTGATT
TGACCATTCTTGTGGATGTTAGATTTGTTTGATTGAACTCATATGTTTTT
AGAAGAAAAAACAACAACACAGAGTATAGGGCGTAAATCGTAACAGACAC
TGGGTTTCCAACCGCGTGCTATGGTTTTCGATGGAACATCGTTGATTGGT
TCGAATACCCAACCAGGCCAATTTCGATCGGTTACCGTTACAATGTTGGG
GTTTTCATACTCGTATCGAGACGAGATGAATGCCGATATGTTGCGGCTTC
CCTTATTTCACGTGAACGCCGTACGCGCCAGATGGCTCAAATCTTGGTGG
CTGTTTTTGCTTTGTTTCCTTTTGTTTGGAAAACAATCGATTTTGATGGC
GATTCTCTTTTGAAGCGTATTCATTCGTGGAATACTTTTGATCGAACTTT
AAATTATCGACCATGGAGGGTTTGAGGGAGGTTAGCCGTGGGCAGGGGTG
GAGAGATTATTTTAGACTAGTTGTTGGGAAGTCCAGCGCCGTCCATGAGT
GGAGTAGTGAGCTAGAAGAATGGCCGTGGGCTGGAGTCGAGGGAGAAGAA
TCAGAGCGCCGCTGGCAGTAATACTTTCTTTCCAATGGCGGGGTGTTATT
TAAAATAGATTTCATACTTGACATTAAAAAGTTCTTGTAAATAGTCCATC
CAGTAGATGAGTGACTCCAAGGAGGACACTGTCAGCAGCAGGGCTTTAGC
GAAGGCATTGCAGATGGACGTCCCCTCGACGAGCCCCTGCATTTGTCTTT
ATCGCTGGAGTGGTGATGTAGCTAGGATTCACGTAGACCGCGCGGAAATT
AATTGTAGAGCTCGGACATCAGCAAGCAGCTGGATGTATTCTGAATTCCG
GATCGCAAAACGTTGAAGCCCGCGCAAGTAAAATTGTCGTTTGCGTGCGG
AACATTTTCGGAGAGTGCCAAACATCGCTGCCAGCAGCGCTATGAGCCTC
CGTTTTGGACGTAGATCTACAATGGTCGCAGGGGATGGGGCGCGTTGCAG
CAGGCCGGTTGTTAACCTAGCGCTGTAGCGCGTTGATTGACCCCGCCAAA
AAGCGAGAAAAACAAGGATACGTGGACTGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig56731:268..2649-

>mRNA_H-elongata_contig56731.13123.1 ID=mRNA_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig56731:268..2649- (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGATGGTCAAGGATGGAGCTGCGGTGCTCGAGGAGACAGCGTT
CTCCTTCACTGGTGCCGTCGCGCTCAGTGCTTTCTGTTGCTGCAGTACTA
TGTCGTTTGTTGCGCTCTGCATAAAGTTCATCACGTGGATGTGGGGGAAC
CGCCAGAGAAGACCGAGGGTGGTGATCCAGAATTGTTACACGCATAACGG
TCACAACAGCGAACAGCGGATGTACGAAGTGGTCGGTGTCAACGCCACCC
GCAACATCGACCATGACACTGAGCTGCGCAAAGGTGTTGGTGCCGTAGCC
ATATCAGAAGTCGAACTGCGCGAAATGCCTCAAACCTTGGAGAAACAGCG
GTCCTGTAACTGGGATACAGATATTGTAGTTTAGGATGGAGCTGCGGTGC
TCGAGGAGACAGCGTTCTCCTTCACTGGTGCCGTCGCGCTCAGTGCTTTC
TGTTGCTGCAGTACTATGTCGTTTGTTGCGCTCTGCATAAAGTTCATCAC
GTGGATGTGGGGGAACCGCCAGAGAAGACCGAGGGTGGTGATCCAGAATT
GTTACACGCATAACGGTCACAACAGCGAACAGCGGATGTACGAAGTGGTC
GGTGTCAACGCCACCCGCAACATCGACCATGACACTGAGCTGCGCAAAGG
TGTTGGTGCCGTAGCCATATCAGAAGTCGAACTGCGCGAAATGCCTCAAA
CCTTGGAGAAACAGCGGTCCTGTAACTGGGATACAGATATTGTAGTTTAG
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