prot_H-elongata_contig56731.13123.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56731.13123.1
Unique Nameprot_H-elongata_contig56731.13123.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length125
Homology
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BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-14
Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 0 
Query:    5 GAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQRRPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISEVELREMP-QTLEKQR----SCNWDTDIV 123
            G   L ETA SFTG +++  FCCCSTMS VALCIK  +WM+G+R RR RV +      N   +E+++Y            +  E R G   +  SE+ELR++P   LE QR    S + D D+V
Sbjct:    9 GGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPHHQPVIILDTNSAEKRSGY-TLHASEIELRQVPFGNLEAQRETKNSDDGDDDVV 131
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BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 9.230e-14
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 0 
Query:    5 GAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQRRPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISEVELREMP-QTLEKQR 114
            G   L ETA SFTG V++  FCCCSTMS VALCIK  +WM+G+R RR RV +      N   +E+++Y            +  E R G   +  SE+ELR++P   LE QR
Sbjct:    9 GGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYYPHQQPVIILDTNPAEQRSGC-TLRASEIELRQVPFGNLEAQR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCN9_9PHAE1.240e-1441.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQF6_ECTSI9.230e-1443.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56731contigH-elongata_contig56731:1741..2568 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56731.13123.1mRNA_H-elongata_contig56731.13123.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56731 268..2649 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56731.13123.1 ID=prot_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MVKDGAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQR
RPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISE
VELREMPQTLEKQRSCNWDTDIVV*
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