mRNA_H-elongata_contig56603.13105.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56603.13105.1
Unique NamemRNA_H-elongata_contig56603.13105.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A6H5JX12_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX12_9PHAE)

HSP 1 Score: 431 bits (1109), Expect = 1.180e-147
Identity = 220/268 (82.09%), Postives = 232/268 (86.57%), Query Frame = 1
Query:    1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKRKAAGHSL 804
            KAL+KMED     +EAKV I LPEPGPIGRPIVQ+EGVTFGYD   PLFSNVHFGVDLDSR+GIVGPNGAGKSTLLNLILDKLRPL GEVRRN NL+IAHFTQHAAEQFDYRLNSVDNMIK+FPGVQEQ                 EMR FLGRFDISGPLA+RPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIE LI ALQ +KGG MIVSHDQHFI++VCSELWVVG+GEV+KYPGEF DYKNEQIAKRKAAG SL
Sbjct:  253 KALEKMEDXXXXXDEAKVTIHLPEPGPIGRPIVQIEGVTFGYDARNPLFSNVHFGVDLDSRVGIVGPNGAGKSTLLNLILDKLRPLSGEVRRNPNLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ-----------------EMRKFLGRFDISGPLALRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEALILALQAFKGGVMIVSHDQHFINKVCSELWVVGSGEVVKYPGEFDDYKNEQIAKRKAAGASL 503          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: D8LTY8_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY8_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 6.510e-145
Identity = 220/268 (82.09%), Postives = 231/268 (86.19%), Query Frame = 1
Query:    1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKRKAAGHSL 804
            KAL+KMED     +EAKV I LPEPGPIGRPIVQ+EGVTFGYD   PLFSNVHFGVDLDSR+GIVGPNGAGKSTLLNLILDKLRPL GEVRRN NL+IAHFTQHAAEQFDYRLNSVDNMIK+FPGVQEQ                 EMR FLGRFDISGPLA+RPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIE LI ALQ +KGG MIVSHDQHFI++VCSELWVVG+GEV KYPGEF DYKNEQIAKRKAAG SL
Sbjct:  446 KALEKMEDXXXXXDEAKVTIHLPEPGPIGRPIVQIEGVTFGYDAGNPLFSNVHFGVDLDSRVGIVGPNGAGKSTLLNLILDKLRPLSGEVRRNPNLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ-----------------EMRKFLGRFDISGPLALRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEALILALQAFKGGVMIVSHDQHFINKVCSELWVVGSGEVAKYPGEFDDYKNEQIAKRKAAGASL 696          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A836CKX3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX3_9STRA)

HSP 1 Score: 318 bits (814), Expect = 1.800e-100
Identity = 164/263 (62.36%), Postives = 200/263 (76.05%), Query Frame = 1
Query:    1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPL-FSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKRK 786
            KALDKME+++EVE E      LPEP  IGRP++ VEGV+FGYD    L F NVHFGVD++SRI IVGPNGAGKSTLLN+++DKL+P+ G V RN  LKIA FTQH AEQFDYRLN+VDNM++++P V EQ                 +MR+FLG+F I+G +A RPLKFLSGGQKSRVAFA LA+S PHV+IMDEPTNHLD+ETI  LI AL+ +KG  + VSHDQHFISQVC+ELWVVG G+  K+ G F+DYK + +A +K
Sbjct:  485 KALDKMEEIDEVENEIPFEFSLPEPTAIGRPVLGVEGVSFGYDAVHGLLFQNVHFGVDMESRIAIVGPNGAGKSTLLNVMMDKLKPVSGYVHRNPQLKIAAFTQHHAEQFDYRLNAVDNMLRMWPKVPEQ-----------------DMRSFLGKFRITGNIATRPLKFLSGGQKSRVAFAALAYSNPHVIIMDEPTNHLDMETINALIQALREFKGAVICVSHDQHFISQVCTELWVVGKGKCNKFKGTFMDYKADIMATKK 730          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: B8CB70_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB70_THAPS)

HSP 1 Score: 270 bits (691), Expect = 2.300e-83
Identity = 135/268 (50.37%), Postives = 186/268 (69.40%), Query Frame = 1
Query:    1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP--LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQI---AKRKA 789
            KA++KM+  E V  E      +P P P+GRPI+ ++ V F Y+      +   V+FGVDLDSRIGI+GPNGAGKSTLLNLI+D+L P +G + RN NL+I HFTQH+A++FD  L++V+NM+ +F   ++QA                 MR+FLGRF I G  A++P+  LSGGQKSRVAFA LA+ KPHV++MDEPTNHLD+E+I+ L+ A++ ++GG ++VSHDQ FI+  C ELWVVG G+  ++ G+F +YK E +   AKR A
Sbjct:  353 KAVEKMDSPEPVTIEPVWTFSIPNPEPLGRPIISIDDVWFDYNAPKDEWILQQVNFGVDLDSRIGILGPNGAGKSTLLNLIMDRLTPNKGSISRNGNLRIGHFTQHSADKFDLHLSAVENMLNLFSEAEDQA-----------------MRSFLGRFQIQGSDALKPMMMLSGGQKSRVAFASLAYQKPHVIVMDEPTNHLDMESIDALVGAVKDFRGGLIVVSHDQFFITNTCGELWVVGEGKTTRFRGDFNEYKKETLERTAKRVA 603          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A7S1Z8Z7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8Z7_TRICV)

HSP 1 Score: 259 bits (662), Expect = 8.710e-81
Identity = 129/255 (50.59%), Postives = 175/255 (68.63%), Query Frame = 1
Query:   64 LPEPGPIGRPIVQVEGVTFGYDPSTP----------LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKN---EQIAKRKA 789
            +P P P+GRPI+ V+  +F Y P             L  +V+FG+DL SRIGI+GPNGAGKSTLLNLI+DKL P RG + RN  L+I +FTQH+A++FD RL++ +NM+ IF G  +Q                 EMR+FLGRF I GP A++P+  LSGGQKSRVAFA L++ KPHV++ DEPTNHLD+E+I+ L+ A++ ++GG ++VSHDQ+F++  C ELWVVG G   ++ G+F DYK    E+ AKR A
Sbjct:  207 IPNPEPLGRPIISVDDASFDYAPLDEDGAKKPSEGWLLRDVNFGIDLSSRIGILGPNGAGKSTLLNLIMDKLNPTRGSISRNGRLRIGYFTQHSADKFDLRLSAAENMMAIFEGSGDQ-----------------EMRSFLGRFQIQGPDALKPMMMLSGGQKSRVAFATLSYQKPHVIVFDEPTNHLDMESIDALMEAVKDYRGGIVVVSHDQYFVTNTCGELWVVGGGTCDRFRGDFNDYKKVTLERTAKRVA 444          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: M4C5V8_HYAAE (ABC transporter domain-containing protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5V8_HYAAE)

HSP 1 Score: 256 bits (653), Expect = 2.000e-80
Identity = 132/265 (49.81%), Postives = 181/265 (68.30%), Query Frame = 1
Query:    1 KALDKM---EDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP-LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKR 783
            KALDK+   E ++E E+E    +  P P P+GRPI+ VE V+F Y P++P LF +VH G+D+ SRIGI+G NG+GKSTL+N+++ KLRP  G V  N  L++A FTQH  +  D   ++V NM ++FPG       HE           DE R+ LGRF++SG LA++P + LSGGQKSRV FA + W  PHVV++DEPTNHLD+ETI+ LI AL+ +KGG +IVSHDQHF++ VC ELWVV + +V ++ G   +YKN  + K+
Sbjct:  128 KALDKILRNELIDEPEDEHAFRMNFPPPEPLGRPIIAVEDVSFRYTPTSPYLFKDVHMGIDMSSRIGILGVNGSGKSTLINVMIGKLRPTDGSVTLNQRLRVATFTQHHVDSLDLSKSAVQNMKEMFPG-------HEP----------DEFRSHLGRFNLSGELAIKPTRTLSGGQKSRVGFALMTWRLPHVVVLDEPTNHLDMETIDALIDALRDYKGGVVIVSHDQHFVTSVCEELWVVDDQKVARFRGTMSEYKNHVLVKK 375          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A7S1YRA7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRA7_9STRA)

HSP 1 Score: 254 bits (649), Expect = 7.330e-80
Identity = 136/278 (48.92%), Postives = 185/278 (66.55%), Query Frame = 1
Query:    1 KALDKM--EDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP----------LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKN---EQIAKRKA 789
            KA++KM  E  E +E E      +P P P+GRPIV ++  +F Y  +            L  +V+FG+DLDSRIGI+G NGAGKSTLLNLI+DKL P  G + RN  L+I HFTQH+A++FD +L++V+NM+  F G  +Q                 EMR+FLG+F I G  A++P+  LSGGQKSRVAFA LA+ +PHV+IMDEPTNHLD+E+I+ L+ A+Q ++GG ++VSHDQ FI+  C ELWVVG G+  ++ G+F +YK    E+ AKR A
Sbjct:  107 KAVEKMDLEAPEPIEIEPVWRFGIPNPEPLGRPIVSIDDASFDYKTTVEGGGKKPSGQYLLQDVNFGIDLDSRIGILGANGAGKSTLLNLIMDKLEPTSGSISRNGRLRIGHFTQHSADKFDLQLSAVENMMASFEGRGDQ-----------------EMRSFLGKFQIQGVDAVKPMLMLSGGQKSRVAFATLAYYRPHVIIMDEPTNHLDMESIDALVEAVQDFRGGLVVVSHDQFFITSTCGELWVVGEGKATRFRGDFNEYKKLTLERTAKRVA 367          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A7S3XXA7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXA7_HETAK)

HSP 1 Score: 252 bits (644), Expect = 2.580e-79
Identity = 128/224 (57.14%), Postives = 162/224 (72.32%), Query Frame = 1
Query:   94 IVQVEGVTFGYD-PSTPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYK 762
            I+QVEG+TFGY    + LF +VHF +DL SRIGI+G NG+GKSTLLNLILD+L P  G V R+ NL++A FTQH AEQF+YRL ++ N++ IFP   EQ                 +MR+ LGRF+I G +A+RP+ FLSGGQKSRVAFA L  S PHV+I+DEPTNHLD+ TI+ LI A Q +KGG + VSHDQHFI+QV +ELWVVG G+V ++   F +YK
Sbjct:  136 ILQVEGITFGYGGEDSILFRDVHFSIDLKSRIGILGANGSGKSTLLNLILDQLHPKAGFVHRHGNLRVAAFTQHHAEQFNYRLTALQNLLNIFPSENEQ-----------------DMRSLLGRFEIGGDIALRPMHFLSGGQKSRVAFAVLVHSNPHVIILDEPTNHLDMGTIDALIGACQKFKGGLVCVSHDQHFITQVTNELWVVGGGQVTRFQEGFDEYK 342          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A662X7F4_9STRA (ABC transporter domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7F4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 5.250e-79
Identity = 130/264 (49.24%), Postives = 178/264 (67.42%), Query Frame = 1
Query:    1 KALDKM---EDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPL-FSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAK 780
            KALDK+   E ++E E+E    +  P P P+GRPI+ V+GV F Y P TPL F +VH GVD+ SRIGI+G NG+GKSTL+N+++ KLR   G V  N  L+++ F+QH  +  D   ++V NM +++PG       HE           DE R  LGRF++SG LA++P + LSGGQKSRV FA + W  PHVV++DEPTNHLD+ETI+ LI AL+ +KGG ++VSHDQHF++ VC ELWVVG+ +V ++ G   +YKN  + K
Sbjct:   99 KALDKILRNELIDEPEDEHAFRMHFPPPEPLGRPIIAVDGVGFRYSPETPLLFRDVHMGVDMSSRIGILGVNGSGKSTLINVMMGKLRASEGSVTMNPRLRVSTFSQHHVDSLDLAKSAVQNMKELYPG-------HEP----------DEFRAHLGRFNLSGELAIKPTRTLSGGQKSRVGFALMTWRLPHVVVLDEPTNHLDMETIDALIDALREFKGGVVVVSHDQHFVNSVCDELWVVGDEKVSRFRGTINEYKNRVLTK 345          
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A397BB31_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BB31_9STRA)

HSP 1 Score: 254 bits (649), Expect = 6.020e-78
Identity = 128/247 (51.82%), Postives = 170/247 (68.83%), Query Frame = 1
Query:   25 VEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP-LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYK 762
            VEE E+     +  P P P+GRPI+ VE V FGY    P LF +V+FG+D+ SRIGI+G NG+GKSTL+NL+L KL P  G+  RN  ++I+ FTQH  +  D    +V+NM+++FPG       HE           DE RT LGRF++SG LAM+P + LSGGQKSRV FA L W  PHVV++DEPTNHLD+ETI+ LI AL+ +KGG +IVSHDQHF++ +C+ELWVVG+ +V ++ G   +YK
Sbjct:  299 VEEPEDPRAFKMNFPPPEPLGRPIISVENVAFGYGDGRPELFHDVNFGIDMSSRIGILGVNGSGKSTLINLMLGKLDPTHGKCVRNPRVRISTFTQHHVDSLDLGKTAVENMMELFPG-------HEP----------DEFRTHLGRFNLSGELAMKPTRKLSGGQKSRVGFAVLTWRLPHVVVLDEPTNHLDIETIDALIDALRNYKGGVVIVSHDQHFVNSICTELWVVGDRKVTRFQGSMAEYK 528          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX12_9PHAE1.180e-14782.09ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LTY8_ECTSI6.510e-14582.09ABC transporter domain-containing protein n=1 Tax=... [more]
A0A836CKX3_9STRA1.800e-10062.36P-loop containing nucleoside triphosphate hydrolas... [more]
B8CB70_THAPS2.300e-8350.37Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1Z8Z7_TRICV8.710e-8150.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
M4C5V8_HYAAE2.000e-8049.81ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7S1YRA7_9STRA7.330e-8048.92Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S3XXA7_HETAK2.580e-7957.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A662X7F4_9STRA5.250e-7949.24ABC transporter domain-containing protein (Fragmen... [more]
A0A397BB31_9STRA6.020e-7851.82Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56603contigH-elongata_contig56603:914..3326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.2
Seed ortholog evalue5.7e-117
Seed eggNOG ortholog2880.D8LTY8
KEGG koko:K06158
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0062@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons4
Model size807
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56603.13105.1prot_H-elongata_contig56603.13105.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56603 914..3311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.4597642-CDS-H-elongata_contig56603:913..10841622930920.4597642-CDS-H-elongata_contig56603:913..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 914..1084 -
1691679625.21692-CDS-H-elongata_contig56603:913..10841691679625.21692-CDS-H-elongata_contig56603:913..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 914..1084 -
1622930920.4779546-CDS-H-elongata_contig56603:1610..18081622930920.4779546-CDS-H-elongata_contig56603:1610..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 1611..1808 -
1691679625.2267122-CDS-H-elongata_contig56603:1610..18081691679625.2267122-CDS-H-elongata_contig56603:1610..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 1611..1808 -
1622930920.490858-CDS-H-elongata_contig56603:2146..24821622930920.490858-CDS-H-elongata_contig56603:2146..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 2147..2482 -
1691679625.237019-CDS-H-elongata_contig56603:2146..24821691679625.237019-CDS-H-elongata_contig56603:2146..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 2147..2482 -
1622930920.5084019-CDS-H-elongata_contig56603:3224..33111622930920.5084019-CDS-H-elongata_contig56603:3224..3311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 3225..3311 -
1691679625.2446303-CDS-H-elongata_contig56603:3224..33111691679625.2446303-CDS-H-elongata_contig56603:3224..3311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56603 3225..3311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.5243213-UTR-H-elongata_contig56603:3311..33261622930920.5243213-UTR-H-elongata_contig56603:3311..3326Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56603 3312..3326 -
1691679625.2522924-UTR-H-elongata_contig56603:3311..33261691679625.2522924-UTR-H-elongata_contig56603:3311..3326Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56603 3312..3326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56603.13105.1

>prot_H-elongata_contig56603.13105.1 ID=prot_H-elongata_contig56603.13105.1|Name=mRNA_H-elongata_contig56603.13105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPLFSNVHFG
VDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHA
AEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRF
DISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIE
GLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKN
EQIAKRKAAGHSL*
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mRNA from alignment at H-elongata_contig56603:914..3326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56603.13105.1 ID=mRNA_H-elongata_contig56603.13105.1|Name=mRNA_H-elongata_contig56603.13105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2413bp|location=Sequence derived from alignment at H-elongata_contig56603:914..3326- (Himanthalia elongata Himel1 dioecious)
AAGGCTCTGGACAAGATGGAGGACGTTGAGGAGGTCGAGGAGGAGGCCAA GGTGGTGATCAAGCTACCGGAGCCTGGACCAATCGGACGCCCGATTGTAC AGGTGAAAGGCGAAAGGAGAAGCGCAAAAACGGTCGGGTCAAAGGCCCGG TCTACGTAGATCTGGACATTTAGGGCTGAGCTGTCAGAGAATCGGATCAC CGACAACGTAAGAAAAGAGCCCTGTCGTGATATTTTGACGGAGATTCCGT ATATAGACGGTCCCTCAACACTCCCTGGTTCTTTCCCGTGGGTGTGTATA TAATATATATATATATAACATAACATTTTAACACTCCGGAGCAGGCTGTT GCTTTTTGCCCCCTCCATCCAAAATACAAATTGATTTCGACGGGACTTGT GCTGGACGGGCGAGGCAGGCGTTGTTGGTTGCCATAGTACTGGGATCAAA GCCGATATAATTTAGCAGCGTTCGGGTCTTTTACGGCATCGCTGTAGATT TACGACTTTTCCGGAAAGAGATCCCCCCTCCCCCCCCCCCTTCCCCCTCC ACGAAAAAAAAGAGGGGGAAGGGGAGTGCGGCTCTGAAGAGACAAGGAAA GCAGAGTAGCGGCGAGGCTAGCACGATATATGGTTGTATGTGTGTATGTG TGTGTTTATTAAATTGCACATAACCGCGCAATGCGGCTCTGTCATGCTAG TCCTTCTAGGATACTCTAATAATAGCATTGATCTTCCCAATGGGGATCAA TGAGGGGGGGGGGAGGGTTCGGTGCGAACCTTGACTTTTCGTTTTGTTGG CATAAGGTAATGTAACATGTTTCTTTTTGTCTCTCTACGCGAAGGTTGAG GGCGTCACGTTCGGCTACGACCCTTCCACGCCGCTCTTCTCGAATGTGCA CTTCGGAGTGGACCTCGACTCCCGAATCGGTATCGTCGGCCCAAACGGGG CGGGGAAATCGACGCTGCTCAACCTCATCCTGGACAAGCTTCGGCCCCTG AGGGGCGAGGTGCGGCGTAACGCGAACCTCAAGATTGCGCACTTCACCCA GCACGCCGCGGAGCAGTTCGACTACCGCCTCAATAGTGTGGACAACATGA TCAAGATTTTCCCGGGAGTGCAGGAGCAGGCACGAAAACACGAAAACGGG GAAGATCAATTAGAGAGAGAAAGATACGACGTACGGTTGGTGTTGATGGG TACATCGCGTTAGGTTCCGTTTGCGGATGGGTTTTATTTTGCGCTCCGGG AAATAACTGCCGGTGATGGATTGAGTGGCCCAAGCGTTCCCAGAGGTTAC GGGTGCGTCATAGTTTAAGGGGAAGACGCGTCGCACGACGATGATCCAGA TTTTGCCCCCGCCCCCCCCCACCCCCCCAAGATATGTTTAGCGCAAAGAT TCTAATTCACTCCCCAAATCTTTGACGAATGTTCTTTGCGCAACGATTCT ATTTCGCTCTATCCCCTACACCCTACTTTCACGCTACCCCGCCTGACTCC TATTCCACTACCTTTCAGGAAATGCGCACGTTTTTGGGGCGTTTTGACAT ATCGGGGCCGCTGGCTATGCGACCGCTGAAGTTTTTATCTGGGGGGCAAA AGTCGCGCGTTGCATTCGCGAAACTGGCATGGTCAAAGCCCCACGTGGTG ATCATGGACGAGCCCACGAACCACCTCGATTTGGAGACGATTGAGGGGCT CATCGCTGCGCTGCAGGTATCCACACACACACATACGTACATAACAAGCC GTCTTAATTTTCACTACGTATATCGCCCAAAATGACATGTAAGGGGACGC CGCACTGTTTTGAAAATACTCCCCCTCCACCCAACCACGCTAGGGGGAGT TATCCCTGAAGCCGTTGATTTCGCTTATCCCAGTCGCGTTGCCTGCACAA TCTCGATACCACTGGTCGTGCGGCCACTGCGATCGGTCCTTCACCCAGCT CGCTATTCTTTCCTATTTGTCGTGTGTTGCTGTTTTGATATATCGCCGCC TCCTGTTTGCGTACCCTCCTAGTTCCCAGGAATAATTTTATCGTATAGAG TAGTGAAAGTTGTTTTGATGCTTTAGGGTGCGAAAAGCGTGAATCGGCAG AGTTCCCATTTTTCGCCTTCCGCGGTAATATGTGAAATCCTTGTCGCGCT CGCTTACCCTCTCAGTTTTGTTTCCGAAGTTATCTTAATCGCCTCTCTTC TCTTCTCTTCTCTGATCCCCCCTCCGATATGCCGATATGTAGGGGTGGAA GGGTGGTGCTATGATTGTTTCTCACGACCAGCACTTCATCAGCCAGGTAT GCTCGGAGCTATGGGTTGTTGGAAATGGCGAGGTTCTCAAGTACCCTGGC GAGTTCATTGACTACAAGAACGAGCAAATCGCGAAGCGGAAGGCAGCCGG CCACAGCTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56603:914..3326-

>mRNA_H-elongata_contig56603.13105.1 ID=mRNA_H-elongata_contig56603.13105.1|Name=mRNA_H-elongata_contig56603.13105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig56603:914..3326- (Himanthalia elongata Himel1 dioecious)
ATGGAGGACGTTGAGGAGGTCGAGGAGGAGGCCAAGGTGGTGATCAAGCT
ACCGGAGCCTGGACCAATCGGACGCCCGATTGTACAGATGGAGGACGTTG
AGGAGGTCGAGGAGGAGGCCAAGGTGGTGATCAAGCTACCGGAGCCTGGA
CCAATCGGACGCCCGATTGTACAGGTTGAGGGCGTCACGTTCGGCTACGA
CCCTTCCACGCCGCTCTTCTCGAATGTGCACTTCGGAGTGGACCTCGACT
CCCGAATCGGTATCGTCGGCCCAAACGGGGCGGGGAAATCGACGCTGCTC
AACCTCATCCTGGACAAGCTTCGGCCCCTGAGGGGCGAGGTGCGGCGTAA
CGCGAACCTCAAGATTGCGCACTTCACCCAGCACGCCGCGGAGCAGTTCG
ACTACCGCCTCAATAGTGTGGACAACATGATCAAGATTTTCCCGGGAGTG
CAGGAGCAGGCACGAAAACACGAAAACGGGGAAGATCAATTAGAGAGAGA
AAGATACGACGTTGAGGGCGTCACGTTCGGCTACGACCCTTCCACGCCGC
TCTTCTCGAATGTGCACTTCGGAGTGGACCTCGACTCCCGAATCGGTATC
GTCGGCCCAAACGGGGCGGGGAAATCGACGCTGCTCAACCTCATCCTGGA
CAAGCTTCGGCCCCTGAGGGGCGAGGTGCGGCGTAACGCGAACCTCAAGA
TTGCGCACTTCACCCAGCACGCCGCGGAGCAGTTCGACTACCGCCTCAAT
AGTGTGGACAACATGATCAAGATTTTCCCGGGAGTGCAGGAGCAGGCACG
AAAACACGAAAACGGGGAAGATCAATTAGAGAGAGAAAGATACGACGAAA
TGCGCACGTTTTTGGGGCGTTTTGACATATCGGGGCCGCTGGCTATGCGA
CCGCTGAAGTTTTTATCTGGGGGGCAAAAGTCGCGCGTTGCATTCGCGAA
ACTGGCATGGTCAAAGCCCCACGTGGTGATCATGGACGAGCCCACGAACC
ACCTCGATTTGGAGACGATTGAGGGGCTCATCGCTGCGCTGCAGGAAATG
CGCACGTTTTTGGGGCGTTTTGACATATCGGGGCCGCTGGCTATGCGACC
GCTGAAGTTTTTATCTGGGGGGCAAAAGTCGCGCGTTGCATTCGCGAAAC
TGGCATGGTCAAAGCCCCACGTGGTGATCATGGACGAGCCCACGAACCAC
CTCGATTTGGAGACGATTGAGGGGCTCATCGCTGCGCTGCAGGGGTGGAA
GGGTGGTGCTATGATTGTTTCTCACGACCAGCACTTCATCAGCCAGGTAT
GCTCGGAGCTATGGGTTGTTGGAAATGGCGAGGTTCTCAAGTACCCTGGC
GAGTTCATTGACTACAAGAACGAGCAAATCGCGAAGCGGAAGGCAGCCGG
CCACAGCTTGTGAGGGTGGAAGGGTGGTGCTATGATTGTTTCTCACGACC
AGCACTTCATCAGCCAGGTATGCTCGGAGCTATGGGTTGTTGGAAATGGC
GAGGTTCTCAAGTACCCTGGCGAGTTCATTGACTACAAGAACGAGCAAAT
CGCGAAGCGGAAGGCAGCCGGCCACAGCTTGTGA
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