mRNA_H-elongata_contig56603.13105.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A6H5JX12_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX12_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 1.180e-147 Identity = 220/268 (82.09%), Postives = 232/268 (86.57%), Query Frame = 1
Query: 1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKRKAAGHSL 804
KAL+KMED +EAKV I LPEPGPIGRPIVQ+EGVTFGYD PLFSNVHFGVDLDSR+GIVGPNGAGKSTLLNLILDKLRPL GEVRRN NL+IAHFTQHAAEQFDYRLNSVDNMIK+FPGVQEQ EMR FLGRFDISGPLA+RPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIE LI ALQ +KGG MIVSHDQHFI++VCSELWVVG+GEV+KYPGEF DYKNEQIAKRKAAG SL
Sbjct: 253 KALEKMEDXXXXXDEAKVTIHLPEPGPIGRPIVQIEGVTFGYDARNPLFSNVHFGVDLDSRVGIVGPNGAGKSTLLNLILDKLRPLSGEVRRNPNLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ-----------------EMRKFLGRFDISGPLALRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEALILALQAFKGGVMIVSHDQHFINKVCSELWVVGSGEVVKYPGEFDDYKNEQIAKRKAAGASL 503
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: D8LTY8_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY8_ECTSI) HSP 1 Score: 431 bits (1108), Expect = 6.510e-145 Identity = 220/268 (82.09%), Postives = 231/268 (86.19%), Query Frame = 1
Query: 1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKRKAAGHSL 804
KAL+KMED +EAKV I LPEPGPIGRPIVQ+EGVTFGYD PLFSNVHFGVDLDSR+GIVGPNGAGKSTLLNLILDKLRPL GEVRRN NL+IAHFTQHAAEQFDYRLNSVDNMIK+FPGVQEQ EMR FLGRFDISGPLA+RPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIE LI ALQ +KGG MIVSHDQHFI++VCSELWVVG+GEV KYPGEF DYKNEQIAKRKAAG SL
Sbjct: 446 KALEKMEDXXXXXDEAKVTIHLPEPGPIGRPIVQIEGVTFGYDAGNPLFSNVHFGVDLDSRVGIVGPNGAGKSTLLNLILDKLRPLSGEVRRNPNLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ-----------------EMRKFLGRFDISGPLALRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEALILALQAFKGGVMIVSHDQHFINKVCSELWVVGSGEVAKYPGEFDDYKNEQIAKRKAAGASL 696
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A836CKX3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX3_9STRA) HSP 1 Score: 318 bits (814), Expect = 1.800e-100 Identity = 164/263 (62.36%), Postives = 200/263 (76.05%), Query Frame = 1
Query: 1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPL-FSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKRK 786
KALDKME+++EVE E LPEP IGRP++ VEGV+FGYD L F NVHFGVD++SRI IVGPNGAGKSTLLN+++DKL+P+ G V RN LKIA FTQH AEQFDYRLN+VDNM++++P V EQ +MR+FLG+F I+G +A RPLKFLSGGQKSRVAFA LA+S PHV+IMDEPTNHLD+ETI LI AL+ +KG + VSHDQHFISQVC+ELWVVG G+ K+ G F+DYK + +A +K
Sbjct: 485 KALDKMEEIDEVENEIPFEFSLPEPTAIGRPVLGVEGVSFGYDAVHGLLFQNVHFGVDMESRIAIVGPNGAGKSTLLNVMMDKLKPVSGYVHRNPQLKIAAFTQHHAEQFDYRLNAVDNMLRMWPKVPEQ-----------------DMRSFLGKFRITGNIATRPLKFLSGGQKSRVAFAALAYSNPHVIIMDEPTNHLDMETINALIQALREFKGAVICVSHDQHFISQVCTELWVVGKGKCNKFKGTFMDYKADIMATKK 730
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: B8CB70_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB70_THAPS) HSP 1 Score: 270 bits (691), Expect = 2.300e-83 Identity = 135/268 (50.37%), Postives = 186/268 (69.40%), Query Frame = 1
Query: 1 KALDKMEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP--LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQI---AKRKA 789
KA++KM+ E V E +P P P+GRPI+ ++ V F Y+ + V+FGVDLDSRIGI+GPNGAGKSTLLNLI+D+L P +G + RN NL+I HFTQH+A++FD L++V+NM+ +F ++QA MR+FLGRF I G A++P+ LSGGQKSRVAFA LA+ KPHV++MDEPTNHLD+E+I+ L+ A++ ++GG ++VSHDQ FI+ C ELWVVG G+ ++ G+F +YK E + AKR A
Sbjct: 353 KAVEKMDSPEPVTIEPVWTFSIPNPEPLGRPIISIDDVWFDYNAPKDEWILQQVNFGVDLDSRIGILGPNGAGKSTLLNLIMDRLTPNKGSISRNGNLRIGHFTQHSADKFDLHLSAVENMLNLFSEAEDQA-----------------MRSFLGRFQIQGSDALKPMMMLSGGQKSRVAFASLAYQKPHVIVMDEPTNHLDMESIDALVGAVKDFRGGLIVVSHDQFFITNTCGELWVVGEGKTTRFRGDFNEYKKETLERTAKRVA 603
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A7S1Z8Z7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8Z7_TRICV) HSP 1 Score: 259 bits (662), Expect = 8.710e-81 Identity = 129/255 (50.59%), Postives = 175/255 (68.63%), Query Frame = 1
Query: 64 LPEPGPIGRPIVQVEGVTFGYDPSTP----------LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKN---EQIAKRKA 789
+P P P+GRPI+ V+ +F Y P L +V+FG+DL SRIGI+GPNGAGKSTLLNLI+DKL P RG + RN L+I +FTQH+A++FD RL++ +NM+ IF G +Q EMR+FLGRF I GP A++P+ LSGGQKSRVAFA L++ KPHV++ DEPTNHLD+E+I+ L+ A++ ++GG ++VSHDQ+F++ C ELWVVG G ++ G+F DYK E+ AKR A
Sbjct: 207 IPNPEPLGRPIISVDDASFDYAPLDEDGAKKPSEGWLLRDVNFGIDLSSRIGILGPNGAGKSTLLNLIMDKLNPTRGSISRNGRLRIGYFTQHSADKFDLRLSAAENMMAIFEGSGDQ-----------------EMRSFLGRFQIQGPDALKPMMMLSGGQKSRVAFATLSYQKPHVIVFDEPTNHLDMESIDALMEAVKDYRGGIVVVSHDQYFVTNTCGELWVVGGGTCDRFRGDFNDYKKVTLERTAKRVA 444
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: M4C5V8_HYAAE (ABC transporter domain-containing protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5V8_HYAAE) HSP 1 Score: 256 bits (653), Expect = 2.000e-80 Identity = 132/265 (49.81%), Postives = 181/265 (68.30%), Query Frame = 1
Query: 1 KALDKM---EDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP-LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAKR 783
KALDK+ E ++E E+E + P P P+GRPI+ VE V+F Y P++P LF +VH G+D+ SRIGI+G NG+GKSTL+N+++ KLRP G V N L++A FTQH + D ++V NM ++FPG HE DE R+ LGRF++SG LA++P + LSGGQKSRV FA + W PHVV++DEPTNHLD+ETI+ LI AL+ +KGG +IVSHDQHF++ VC ELWVV + +V ++ G +YKN + K+
Sbjct: 128 KALDKILRNELIDEPEDEHAFRMNFPPPEPLGRPIIAVEDVSFRYTPTSPYLFKDVHMGIDMSSRIGILGVNGSGKSTLINVMIGKLRPTDGSVTLNQRLRVATFTQHHVDSLDLSKSAVQNMKEMFPG-------HEP----------DEFRSHLGRFNLSGELAIKPTRTLSGGQKSRVGFALMTWRLPHVVVLDEPTNHLDMETIDALIDALRDYKGGVVIVSHDQHFVTSVCEELWVVDDQKVARFRGTMSEYKNHVLVKK 375
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A7S1YRA7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRA7_9STRA) HSP 1 Score: 254 bits (649), Expect = 7.330e-80 Identity = 136/278 (48.92%), Postives = 185/278 (66.55%), Query Frame = 1
Query: 1 KALDKM--EDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP----------LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKN---EQIAKRKA 789
KA++KM E E +E E +P P P+GRPIV ++ +F Y + L +V+FG+DLDSRIGI+G NGAGKSTLLNLI+DKL P G + RN L+I HFTQH+A++FD +L++V+NM+ F G +Q EMR+FLG+F I G A++P+ LSGGQKSRVAFA LA+ +PHV+IMDEPTNHLD+E+I+ L+ A+Q ++GG ++VSHDQ FI+ C ELWVVG G+ ++ G+F +YK E+ AKR A
Sbjct: 107 KAVEKMDLEAPEPIEIEPVWRFGIPNPEPLGRPIVSIDDASFDYKTTVEGGGKKPSGQYLLQDVNFGIDLDSRIGILGANGAGKSTLLNLIMDKLEPTSGSISRNGRLRIGHFTQHSADKFDLQLSAVENMMASFEGRGDQ-----------------EMRSFLGKFQIQGVDAVKPMLMLSGGQKSRVAFATLAYYRPHVIIMDEPTNHLDMESIDALVEAVQDFRGGLVVVSHDQFFITSTCGELWVVGEGKATRFRGDFNEYKKLTLERTAKRVA 367
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A7S3XXA7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXA7_HETAK) HSP 1 Score: 252 bits (644), Expect = 2.580e-79 Identity = 128/224 (57.14%), Postives = 162/224 (72.32%), Query Frame = 1
Query: 94 IVQVEGVTFGYD-PSTPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYK 762
I+QVEG+TFGY + LF +VHF +DL SRIGI+G NG+GKSTLLNLILD+L P G V R+ NL++A FTQH AEQF+YRL ++ N++ IFP EQ +MR+ LGRF+I G +A+RP+ FLSGGQKSRVAFA L S PHV+I+DEPTNHLD+ TI+ LI A Q +KGG + VSHDQHFI+QV +ELWVVG G+V ++ F +YK
Sbjct: 136 ILQVEGITFGYGGEDSILFRDVHFSIDLKSRIGILGANGSGKSTLLNLILDQLHPKAGFVHRHGNLRVAAFTQHHAEQFNYRLTALQNLLNIFPSENEQ-----------------DMRSLLGRFEIGGDIALRPMHFLSGGQKSRVAFAVLVHSNPHVIILDEPTNHLDMGTIDALIGACQKFKGGLVCVSHDQHFITQVTNELWVVGGGQVTRFQEGFDEYK 342
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A662X7F4_9STRA (ABC transporter domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7F4_9STRA) HSP 1 Score: 251 bits (641), Expect = 5.250e-79 Identity = 130/264 (49.24%), Postives = 178/264 (67.42%), Query Frame = 1
Query: 1 KALDKM---EDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPL-FSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYKNEQIAK 780
KALDK+ E ++E E+E + P P P+GRPI+ V+GV F Y P TPL F +VH GVD+ SRIGI+G NG+GKSTL+N+++ KLR G V N L+++ F+QH + D ++V NM +++PG HE DE R LGRF++SG LA++P + LSGGQKSRV FA + W PHVV++DEPTNHLD+ETI+ LI AL+ +KGG ++VSHDQHF++ VC ELWVVG+ +V ++ G +YKN + K
Sbjct: 99 KALDKILRNELIDEPEDEHAFRMHFPPPEPLGRPIIAVDGVGFRYSPETPLLFRDVHMGVDMSSRIGILGVNGSGKSTLINVMMGKLRASEGSVTMNPRLRVSTFSQHHVDSLDLAKSAVQNMKELYPG-------HEP----------DEFRAHLGRFNLSGELAIKPTRTLSGGQKSRVGFALMTWRLPHVVVLDEPTNHLDMETIDALIDALREFKGGVVVVSHDQHFVNSVCDELWVVGDEKVSRFRGTINEYKNRVLTK 345
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Match: A0A397BB31_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BB31_9STRA) HSP 1 Score: 254 bits (649), Expect = 6.020e-78 Identity = 128/247 (51.82%), Postives = 170/247 (68.83%), Query Frame = 1
Query: 25 VEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTP-LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLKIAHFTQHAAEQFDYRLNSVDNMIKIFPGVQEQARKHENGEDQLERERYDEMRTFLGRFDISGPLAMRPLKFLSGGQKSRVAFAKLAWSKPHVVIMDEPTNHLDLETIEGLIAALQGWKGGAMIVSHDQHFISQVCSELWVVGNGEVLKYPGEFIDYK 762
VEE E+ + P P P+GRPI+ VE V FGY P LF +V+FG+D+ SRIGI+G NG+GKSTL+NL+L KL P G+ RN ++I+ FTQH + D +V+NM+++FPG HE DE RT LGRF++SG LAM+P + LSGGQKSRV FA L W PHVV++DEPTNHLD+ETI+ LI AL+ +KGG +IVSHDQHF++ +C+ELWVVG+ +V ++ G +YK
Sbjct: 299 VEEPEDPRAFKMNFPPPEPLGRPIISVENVAFGYGDGRPELFHDVNFGIDMSSRIGILGVNGSGKSTLINLMLGKLDPTHGKCVRNPRVRISTFTQHHVDSLDLGKTAVENMMELFPG-------HEP----------DEFRTHLGRFNLSGELAMKPTRKLSGGQKSRVGFAVLTWRLPHVVVLDEPTNHLDIETIDALIDALRNYKGGVVIVSHDQHFVNSICTELWVVGDRKVTRFQGSMAEYK 528 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56603.13105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56603.13105.1 >prot_H-elongata_contig56603.13105.1 ID=prot_H-elongata_contig56603.13105.1|Name=mRNA_H-elongata_contig56603.13105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp MEDVEEVEEEAKVVIKLPEPGPIGRPIVQVEGVTFGYDPSTPLFSNVHFGback to top mRNA from alignment at H-elongata_contig56603:914..3326- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56603.13105.1 ID=mRNA_H-elongata_contig56603.13105.1|Name=mRNA_H-elongata_contig56603.13105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2413bp|location=Sequence derived from alignment at H-elongata_contig56603:914..3326- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56603:914..3326- >mRNA_H-elongata_contig56603.13105.1 ID=mRNA_H-elongata_contig56603.13105.1|Name=mRNA_H-elongata_contig56603.13105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig56603:914..3326- (Himanthalia elongata Himel1 dioecious)back to top |