prot_H-elongata_contig116688.1309.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116688.1309.1
Unique Nameprot_H-elongata_contig116688.1309.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length112
Homology
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.300e-51
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 0
Query:    1 IRSLVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEE-TGGISLWEGGIGGDRSGYTGPFEESER 111
            +RSLVDGVFD+LC+HLE GHE+LGRLEKKME+DRLTNG+LT+EKE+NLEESRK YE LLGNV+SLA+SLNRDMPQLPE E EEE +GGISLWEGG+GGD +GYTGPFEESER
Sbjct:  674 LRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESER 785          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.830e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 0
Query:    4 LVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRSGYTGPFEESERR 112
            ++ GV   L  HL   H+ L +LE++ME+DRL  GSLT+EKE+NLE S  AY  LL NV +L+ +L+ DMP LPE++EEEE GG+ LW  G+G    G  GP+++ E +
Sbjct:  257 VLQGVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEELGGVELWSSGVGLGE-GDLGPWDDLETK 364          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A8J2S5M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5M1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.580e-9
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0
Query:   20 HERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQL---PEEEEEEETGGISLWEGGIGGDRSGYTGPFEESERR 112
            HE L  LE+K  RD L +GSLT+EKEK LE++RKA E L+  VS+L  +L+ D P L    + EEE++ G +SLW    G  RS   G +++   R
Sbjct:  373 HEALRSLERKAARDALNHGSLTEEKEKALEDARKAREKLVKEVSALCDALDIDPPVLLDGDDSEEEDDKGELSLWTAERGS-RSESAGAYDDDAAR 467          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A6V0BH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BH58_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.100e-9
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    7 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGG--ISLWEGGIGGDRSGYT-GPFEESERR 112
            G ++ L   L     +L ++EK+ E+DRL  GSLT+ +EK L+++RK  E L  +V +++  ++  +PQL +E EEE  GG  + +W    GGD  G   GPF++ E R
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVWTKD-GGDEDGTNFGPFDDEETR 593          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A6V0BI57_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BI57_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.140e-9
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    7 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGG--ISLWEGGIGGDRSGYT-GPFEESERR 112
            G ++ L   L     +L ++EK+ E+DRL  GSLT+ +EK L+++RK  E L  +V +++  ++  +PQL +E EEE  GG  + +W    GGD  G   GPF++ E R
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVWTKD-GGDEDGTNFGPFDDEETR 593          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: UPI001E1E0EF2 (LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0EF2)

HSP 1 Score: 62.0 bits (149), Expect = 7.440e-9
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 0
Query:    2 RSLVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLW 91
            R+L+   ++SLC HL   H+ L  +EK+  +  LT G L+ E+++  EE   +Y+ L  N       ++ DMP LPE++ +E+ GG+ ++
Sbjct:  418 RNLLGEYYNSLCKHLMADHKNLKNMEKQNRKTLLTKGELSTERKEKYEEFYNSYQKLFSNTQVFTDLVDEDMPDLPEDDPQEDDGGLDIF 507          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A7S1ZWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWS9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.390e-9
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 0
Query:    7 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRSG 101
            G + +L +     H +L +LEK+ E+D+L  GSL++ +EK L+++RK  E +  +V +LA SLN+D+P+L   EEEE  G       G GGD+ G
Sbjct:  312 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKL---EEEEXXGN------GTGGDKDG 397          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A7S4QUB8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUB8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.850e-9
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 0
Query:    7 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRSG 101
            G + +L +     H +L +LEK+ E+D+L  GSL++ +EK L+++RK  E +  +V +LA SLN+D+P+L   EEEE  G       G GGD+ G
Sbjct:  361 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKL---EEEEXXGN------GTGGDKDG 446          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A448Z1B4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1B4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-8
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 0
Query:    7 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGG--ISLWEGGIGGDRSGYT-GPFEESERR 112
            G +  L   L     +L ++EK+ E+DRL  GSLTD +EK L+++RK  E L  +V +++  ++  +PQL +E EEE  GG  + +W    GGD  G   GPF++ E R
Sbjct:  470 GAYAFLSRSLIETDTKLQKMEKRCEQDRLLAGSLTDAREKGLQDARKLRESLEKSVEAMSDIMDLPLPQLEKEAEEETEGGTGVEVWTKD-GGDEDGTDFGPFDDEETR 577          
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.820e-8
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    7 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETG---GISLW--EGGIGGDRSGYTGPFEESERR 112
            G F +L   L   H +L +LEK+ E+DRL  GSLT+ ++K L+++RK ++ L  +V  +   L+   P L EE++EEE     G+ +W  EG  G D     GPF++ E R
Sbjct:  396 GAFGTLSKSLVETHGKLRKLEKRCEQDRLLAGSLTEARQKGLDDARKLFDNLQKSVEVIGDLLDLKPPVLNEEDDEEEEAKGSGLEVWTKEGEDGED----FGPFDDDETR 502          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.300e-5182.14Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA3.830e-2148.62Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A8J2S5M1_9STRA1.580e-944.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V0BH58_9STRA2.100e-937.61Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6V0BI57_9STRA2.140e-937.61Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
UPI001E1E0EF27.440e-933.33LOW QUALITY PROTEIN: regulator of nonsense transcr... [more]
A0A7S1ZWS9_9STRA9.390e-940.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QUB8_9STRA9.850e-940.00Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A448Z1B4_9STRA1.020e-838.53Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U5Q234_9STRA4.820e-837.84Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..77
e-value: 5.3E-15
score: 57.5
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 2..111
NoneNo IPR availablePANTHERPTHR12839:SF7REGULATOR OF NONSENSE TRANSCRIPTS 2coord: 2..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116688contigH-elongata_contig116688:1162..2009 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116688.1309.1mRNA_H-elongata_contig116688.1309.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116688 1162..2009 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116688.1309.1 ID=prot_H-elongata_contig116688.1309.1|Name=mRNA_H-elongata_contig116688.1309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
IRSLVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEE
SRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRS
GYTGPFEESERR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR039762Nmd2/UPF2