mRNA_H-elongata_contig56442.13092.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56442.13092.1
Unique NamemRNA_H-elongata_contig56442.13092.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56442.13092.1 vs. uniprot
Match: A0A6H5KLQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.010e-49
Identity = 81/104 (77.88%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:   22 QHTVCTRRSGRKTLEGGVRHEDGVLLVPDCRKLRQEIVRSTCMDPAGAIRPDYVAYAGGAPVFLDGAPLGIFCVFSRRTLKDIGWSVHHTAVLRGLVDAASTEV 333
            QH VC  R GRK+L+GGVR+EDGVLLVPDCRKLRQEIVRSTCMDPAG++RPDYVAY G AP+++DGAPLG FCVFSRRTL+D+GW+ HHT VLRGL DAA+TE+
Sbjct:  916 QHAVCAPRLGRKSLDGGVRYEDGVLLVPDCRKLRQEIVRSTCMDPAGSVRPDYVAYVG-APIYVDGAPLGTFCVFSRRTLRDLGWTAHHTIVLRGLADAAATEI 1018
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BLAST of mRNA_H-elongata_contig56442.13092.1 vs. uniprot
Match: D7FXI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI9_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.490e-49
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:   22 QHTVCTRRSGRKTLEGGVRHEDGVLLVPDCRKLRQEIVRSTCMDPAGAIRPDYVAYAGGAPVFLDGAPLGIFCVFSRRTLKDIGWSVHHTAVLRGLVDAASTEV 333
            QH VC  R GRK+L+ GVR+EDGVLLVPDCRKLRQEIVRSTCMDPAG++RPDYVAY G AP+++DGAPLG FCVFSRRTLKD+GW+ HHT VLRGL DAA+TE+
Sbjct:  888 QHAVCAPRLGRKSLDAGVRYEDGVLLVPDCRKLRQEIVRSTCMDPAGSVRPDYVAYVG-APIYVDGAPLGTFCVFSRRTLKDLGWTAHHTVVLRGLADAAATEM 990
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56442.13092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ0_9PHAE1.010e-4977.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXI9_ECTSI3.490e-4977.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56442contigH-elongata_contig56442:245..1350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.7233672-CDS-H-elongata_contig56442:244..4081622930918.7233672-CDS-H-elongata_contig56442:244..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56442 245..408 -
1691679624.450036-CDS-H-elongata_contig56442:244..4081691679624.450036-CDS-H-elongata_contig56442:244..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56442 245..408 -
1622930918.7465768-CDS-H-elongata_contig56442:1154..13501622930918.7465768-CDS-H-elongata_contig56442:1154..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56442 1155..1350 -
1691679624.4651935-CDS-H-elongata_contig56442:1154..13501691679624.4651935-CDS-H-elongata_contig56442:1154..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56442 1155..1350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56442.13092.1prot_H-elongata_contig56442.13092.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56442 245..1350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56442.13092.1

>prot_H-elongata_contig56442.13092.1 ID=prot_H-elongata_contig56442.13092.1|Name=mRNA_H-elongata_contig56442.13092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MCVYPCPQHTVCTRRSGRKTLEGGVRHEDGVLLVPDCRKLRQEIVRSTCM
DPAGAIRPDYVAYAGGAPVFLDGAPLGIFCVFSRRTLKDIGWSVHHTAVL
RGLVDAASTEVSCFGCTKN*
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mRNA from alignment at H-elongata_contig56442:245..1350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56442.13092.1 ID=mRNA_H-elongata_contig56442.13092.1|Name=mRNA_H-elongata_contig56442.13092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-elongata_contig56442:245..1350- (Himanthalia elongata Himel1 dioecious)
ATGTGTGTTTATCCTTGTCCGCAGCACACCGTGTGCACCCGGCGCTCCGG
GCGCAAGACGCTGGAGGGTGGAGTTCGACATGAGGATGGCGTGCTGCTAG
TGCCCGATTGCCGCAAGCTCCGACAGGAAATCGTGCGCAGCACATGCATG
GACCCCGCCGGCGCCATCCGCCCCGACTACGTGGCCTACGCCGGTGGTTT
TCCCCAACAGGCGTGCCCACCGTGGGGGAAGGGGCGTGTACCGTACAGAC
CTGCACACCGTTTCGTCCCATAGGGTAAGTTACAGGTTATGTACAAGAAC
GCCTATGTCTGAGGATGATATATGGACATCCCCGATTGATTTTCTCTCGC
AACCTAGTACGCTCATCGGCGGATCGATTTGTAGCAATCTCGCGCAAGGC
TTTCGGAAAACTGGTAGCAGCTTGTGCTTTTAGTTTGTTTGTTTTAGTTT
GTTTGTTTTAGTTTAGTTTTTTATAGTTTGGGGTAATGATGACGTTATCG
AGAAAAACAACTACTACTGTATGGATTTTCAAACTGTCGAGATAAAAAGG
GAGGGGGCAGTAGAAGAGGGAGATTTTTAATAGATTGGGGGAGGCGTTAT
GATAGAAGGGGTGAGGGAGGGTTCTCTAAGCAGCAAAGACACGAAGAAAT
ATTTTGTACGCCCCCTCCTTCCCCCCTTCACACTAGACCAGGCTAGACTT
GGACATGCTAGTCTAAGCTTCTCTATGCTCTCAATGTACTAGCCCGCGCC
CCTGCTACTGCTGCTCTAAGCCTATGTTTTGCGCTACACTGCGCGATGCT
AAGATTCGAACGTCTCTCCCAGCCCCGTCGCTGTACACACATACACACAT
GTCGTTGTGTAGCAGGCCCTCCGCGCACAAGAGTTGCACCACCTTGAAAC
GGAATTTCGCCCGCCTCCCCCCCTCCCCGTTCTTGCCTGCAGGGGCCCCC
GTCTTCCTGGACGGTGCTCCATTGGGAATATTTTGTGTTTTCTCGCGGCG
CACGCTTAAGGATATCGGCTGGAGCGTGCACCACACCGCTGTCCTACGAG
GGCTTGTCGACGCCGCTTCCACCGAGGTGAGTTGCTTTGGGTGCACGAAA
AATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig56442:245..1350-

>mRNA_H-elongata_contig56442.13092.1 ID=mRNA_H-elongata_contig56442.13092.1|Name=mRNA_H-elongata_contig56442.13092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig56442:245..1350- (Himanthalia elongata Himel1 dioecious)
ATGTGTGTTTATCCTTGTCCGCAGCACACCGTGTGCACCCGGCGCTCCGG
GCGCAAGACGCTGGAGGGTGGAGTTCGACATGAGGATGGCGTGCTGCTAG
TGCCCGATTGCCGCAAGCTCCGACAGGAAATCGTGCGCAGCACATGCATG
GACCCCGCCGGCGCCATCCGCCCCGACTACGTGGCCTACGCCGGTGATGT
GTGTTTATCCTTGTCCGCAGCACACCGTGTGCACCCGGCGCTCCGGGCGC
AAGACGCTGGAGGGTGGAGTTCGACATGAGGATGGCGTGCTGCTAGTGCC
CGATTGCCGCAAGCTCCGACAGGAAATCGTGCGCAGCACATGCATGGACC
CCGCCGGCGCCATCCGCCCCGACTACGTGGCCTACGCCGGTGGGGCCCCC
GTCTTCCTGGACGGTGCTCCATTGGGAATATTTTGTGTTTTCTCGCGGCG
CACGCTTAAGGATATCGGCTGGAGCGTGCACCACACCGCTGTCCTACGAG
GGCTTGTCGACGCCGCTTCCACCGAGGTGAGTTGCTTTGGGTGCACGAAA
AATTAAGGGCCCCCGTCTTCCTGGACGGTGCTCCATTGGGAATATTTTGT
GTTTTCTCGCGGCGCACGCTTAAGGATATCGGCTGGAGCGTGCACCACAC
CGCTGTCCTACGAGGGCTTGTCGACGCCGCTTCCACCGAGGTGAGTTGCT
TTGGGTGCACGAAAAATTAA
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