mRNA_H-elongata_contig5634.13079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5634.13079.1
Unique NamemRNA_H-elongata_contig5634.13079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A1S2Z2D8_CICAR (uncharacterized protein LOC101508631 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Z2D8_CICAR)

HSP 1 Score: 87.0 bits (214), Expect = 6.000e-15
Identity = 92/346 (26.59%), Postives = 154/346 (44.51%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNL-PWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILV-----AKRRKYSHTPYLSVAWALG-----PECHQEKIHGV--------DNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMYKRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWSLH 1095
            CV H ++L+ K  + L  W   T  + K +V+YI NH +  A+ +ANS  + L VA +TRFA++++  KR L  R  L        + +++K      R +G  V   +  G ++   FW E+E +V I +P+YLL++ ADG    + + +     +  ++ +I K         E     +  V  R   +N  +         ++  T YLS     G     P   +E +  V        +N + QK  LL  +  +FH+         +K   +M+ AQL +                 M   +WW MYGS  +E +A+VA +V  +  SS++ ER WS +
Sbjct:  236 CVVHTLNLIFKDFAELFEWLRNTYKQGKTIVKYIINHSQVLAMYRANSKLELLKVA-KTRFASHYILLKRLLMCREALATTVVLNSWKEWIKQGDENTRKIGALVAETI--GSDF---FWEEVEHVVKITKPIYLLIKFADGEGPKMGEFYEKIDSMLGEIQEIMKTNKYANCYSEM----ETIVTARWTKMNYTIHCLGFVLNPRFYDTHYLSTPAPGGIARKDPNQDKEVVTVVMQAFEKIFENAEEQK--LLRDQFAIFHK--------KKKGIYAMSAAQLDVVT---------------MDSIDWWSMYGSETSE-LAEVAKKVLSQPISSSSAERTWSTY 545          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI000B781A96 (uncharacterized protein LOC110642122 n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B781A96)

HSP 1 Score: 82.4 bits (202), Expect = 2.040e-13
Identity = 90/347 (25.94%), Postives = 150/347 (43.23%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDED--VKERLGPVNI------LVAKRRKYSH----TPYLSVAWALGPECHQEKIHGV--------DNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMYKRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWSLH 1095
            C A G ++         W + T  + K +V+Y  NH +  ++ +  S  + L VA +TRFA++++  KR L  R  L        + ++ K+   K++  G  V   + + E     FW E+E +V+I +P+YLL++ +DG      KL  ++ ++   L ++   K  +T  + +  +   +  V ER   +NI           R Y H    TP         P   +E + GV        +NG  QK  LL  + ++FH          +K   SM  AQ+                A  M   +WW  YGS   E +A+VA +V  +  SS++ ER WS +
Sbjct:  308 CKAAGKEIEKDFAQKFDWLNDTYKRGKCIVKYFINHTQALSIFRTQSKLELLKVA-KTRFASHYILLKRLLVCREALATTIVLKSWKEWTKNGDEKMKTTGALVAETISDDE-----FWEEVENIVAITKPLYLLIKFSDGEG---PKLGEIYEKMDSMLGEL---KDIMTNNKYKDSYEQMEAIVVERWAKMNIPMHCLGFALTPRFYDHHYLETPAPGGVPRKAPNLDKEVVLGVMDDFERIAENGAKQK--LLREQFVIFHM---------KKGIYSMPAAQID---------------AVTMDSIDWWSTYGSETPE-LAEVAKKVLSQPISSSSAERNWSTY 615          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI001C690C13 (uncharacterized protein LOC111920429 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C690C13)

HSP 1 Score: 71.6 bits (174), Expect = 6.090e-10
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 1
Query:   28 NVDAVTSDGA--CRGMLLILEQKSP*LTGMKCVAHGVDLLLKGISN-LPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG 537
            NV  V +D A  C+     +E+    +    C  H ++L+ K ++    W  +T  + K +V+Y  NH    +  + NS  + L VA +TRFA++++   R +E R  L        + ++VK+     R+VG K+   +K+      QFW ++E +++I +P++LLL+  DG
Sbjct:  298 NVLQVVTDNAANCKAAGREIERIHKHIFWSPCCVHTLNLIFKDLAKEFYWLEETYKRGKGIVKYFINHTHALSFFRENSTLELLKVA-KTRFASHYIVLHRLIECREALSTTIVLNSWREWVKNGDEATRIVGSKIVDTVKD-----DQFWDDVENILAITKPIFLLLKFCDG 464          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI000B780185 (uncharacterized protein LOC110665762 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B780185)

HSP 1 Score: 65.5 bits (158), Expect = 4.550e-8
Identity = 41/141 (29.08%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG 537
            C A G ++         W + T  + K +V+Y+ NH +  ++ +  S K  LL   +TRFA++++  KR L  R  L        + ++ K+   K+R +G  V   + + E     FW E+E +V+I +P+YLL++ +DG
Sbjct:  184 CKAAGKEIEKDFAQKFDWLNDTYKRGKCIVKYVINHTQALSIFRTQS-KLELLKVTKTRFASHYILLKRLLVCREALATTIVLKSWKEWTKNGDEKMRTMGALVAETISDDE-----FWEEVENIVAITKPLYLLIKFSDG 318          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A565C9A9_9BRAS (DUF659 domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565C9A9_9BRAS)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-7
Identity = 49/204 (24.02%), Postives = 93/204 (45.59%), Query Frame = 1
Query:    1 DFVGKYMTRNVD--------AVTSDGACRGMLL--ILEQKSP*LTGMKCVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFHLFRQL 582
            +++ KY+   ++         V +D A   +    +L++K P +    C AH +DL+L+G+S LPW ++   + K++  +I  H KT  + +     K ++    TRFAT FL+ +   + +  L+ +     + +   S   K +     V             FW     ++ +  P+  +LR+ADG K   S  F+L+R +
Sbjct:  112 EYIFKYIDNCIEDIGAGKVVQVVTDNATNNVAAAKLLKKKRPNIFWTGCAAHTLDLMLEGVSKLPWFAKVINQAKSLTIFIYAHHKTLFMMRKYKNNKDIVRPGATRFATCFLTLQSLYDKKAQLKSMFGSDEWHECKHSKCVKGKTASDTVM---------SYAFWNNALVVLKVFTPLVKVLRLADGEKKTFSG-FYLWRDI 305          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A388LE59_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LE59_CHABU)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-7
Identity = 48/152 (31.58%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRAL--RKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLF 564
            C AH ++LLLK ISN+ W      K +N+V++I NH+ T  L  R +   +K L++  E RFA+ +L   R  + R +L+ + ++   D Y  S   K R   + +   ++    WQ     +++ ++SI++P+Y LLR+ D   L  S+L+
Sbjct:  389 CAAHTLNLLLKDISNIAWIKTVWKKGRNLVKFIKNHQSTMGLMSRCSMGDRKVLVMPTEVRFASVYLMLIRIWDRRHVLKHMMDNGWLDIYWSSQ--KDREDAEDIFAHVRCDMWWQ-----KVDTILSIIKPIYDLLRMMDSDGLAHSQLW 533          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI001CC76817 (uncharacterized protein LOC122650773 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC76817)

HSP 1 Score: 62.4 bits (150), Expect = 5.190e-7
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   76 ILEQKSP*LTGMKCVAHGVDLLLKGI-SNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVV--SNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG 537
            ++ +K P +  + C AHGV LLLK I + + W  +   K K VV ++  H    AL +  +  K L    +TRFA NF   K  L++  +L V+  S ++  +   +S       +G  V  +++  E     FW   + ++SILEP+ ++LR+ DG
Sbjct:   75 LIMEKYPHIHRVTCAAHGVQLLLKDIDARISWVKEVFDKAKLVVGFMYKHGTVLALMRECTGGKELKKPCKTRFAYNFFMLKSILDVEDLLRVMVASAEWRINKNYRSD------LGAMVTQIIQSTE-----FWLNAKDVLSILEPLIIVLRLVDG 220          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI0008FF7D69 (uncharacterized protein LOC100853850 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FF7D69)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-6
Identity = 77/332 (23.19%), Postives = 142/332 (42.77%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKC---LLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG-VKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILVAKRRKYSHTPYLSVAWALGPECHQEKIHGVDNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMY---KRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWS 1089
            C AH +DL+ + I   P   +     + +  +I NH        A   K C   ++    TRFATN+++    L+ R  L+ +   ++ D++ +    + +L G+++  +L     +   +W  L  +VS+ EP+Y++LR+ D  V   +  ++ L   + E L +           +    W  + +++R           +K    P  + A+ L P     +  G D   +Q  +  VF +L           +   ES+     +L ++   KRG  D    +   + M  AEWW MYG+     + ++A +V  +  SS+A ER WS
Sbjct:  205 CAAHCIDLIFEDIGKKPNVIEVINNARKITNFIYNH----GWLLAQMRKYCGGDIVRPGATRFATNYIALDSLLKKRADLKKL---FMSDEWAQHKLSRTKL-GRELEQLL-----FDHTYWDRLTNIVSLYEPLYVVLRLVDSEVVPTMPFVYELMHVMKENLIR-----------QGAGDWMFKIIQDRW----------QKTLKHPLHAAAYFLNPRFQYRRGVGSDPELLQA-VHDVFAKL-----------DPTTESLGQFGNELVLFRDAKRGFGDRAA-IASRSTMVPAEWWFMYGNQ-TPTLRKLAIKVLSQTASSSACERNWS 488          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A388MCJ1_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MCJ1_CHABU)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-6
Identity = 45/153 (29.41%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRAL--RKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFH 567
            C AH + LLLK ISN+ W      K +N+V++I NH+ T  L  R +   +K L++  E RF + +    R  + R +L+ + ++   D Y  S   K R   + +   ++    WQ     +++ ++SI++P+Y LLR+ D   + +S+L+ 
Sbjct:  158 CAAHTLSLLLKDISNIAWIKTVWKKGRNLVKFIKNHQSTMGLLSRCSMGDRKVLVMPTEVRFTSVYQMLIRIWDRRHVLKHMMDNGWLDIYWSSW--KDREDAEDIFAHVRCDIRWQ-----KVDTILSIMKPIYDLLRMMDSDGVALSQLWR 303          
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI0008FFA3C2 (uncharacterized protein LOC104878865 n=2 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FFA3C2)

HSP 1 Score: 60.8 bits (146), Expect = 1.880e-6
Identity = 75/332 (22.59%), Postives = 143/332 (43.07%), Query Frame = 1
Query:  115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKC---LLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG-VKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILVAKRRKYSHTPYLSVAWALGPECHQEKIHGVDNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMY---KRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWS 1089
            C AH +DL+ + I   P   +     + +  +I NH        A   K C   ++    TRFATN+++    L+ R  L+ +   ++ D++ +    + +L G+++  +L     +   +W  L  +VS+ EP+Y++LR+ D  +   +  ++ L + + E L +           +    W  + +++R           +K    P  + A+ L P     +  G D   +Q  +  VF +L           +   +S+     +L ++   KRG  D    +   + M  AEWW MYG+     + ++A +V  +  SS+A ER WS
Sbjct:  146 CAAHCIDLIFEDIGKRPNVIEVINNARKITNFIYNH----GWLLAQMRKYCGGDIVRPGATRFATNYIALDSLLKKRADLKKL---FISDEWAQHKLSRTKL-GRELEQLL-----FDHTYWDRLTNIVSLYEPLYVVLRLVDSEIVPTMPFVYELMQVMKENLIR-----------QGAGDWMFKIIQDRW----------QKTLKHPLHAAAYFLNPRFQYRRGVGSDPELLQA-VHDVFAKL-----------DPTTKSLGQFGNELVLFRDAKRGFGDRAA-IASRSTMVPAEWWFMYGNQ-TPTLRKLAIKVLSQTASSSACERNWS 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A1S2Z2D8_CICAR6.000e-1526.59uncharacterized protein LOC101508631 n=1 Tax=Cicer... [more]
UPI000B781A962.040e-1325.94uncharacterized protein LOC110642122 n=4 Tax=Hevea... [more]
UPI001C690C136.090e-1028.32uncharacterized protein LOC111920429 n=1 Tax=Lactu... [more]
UPI000B7801854.550e-829.08uncharacterized protein LOC110665762 n=1 Tax=Hevea... [more]
A0A565C9A9_9BRAS1.200e-724.02DUF659 domain-containing protein n=1 Tax=Arabis ne... [more]
A0A388LE59_CHABU1.280e-731.58Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI001CC768175.190e-730.57uncharacterized protein LOC122650773 n=1 Tax=Telop... [more]
UPI0008FF7D691.020e-623.19uncharacterized protein LOC100853850 n=1 Tax=Vitis... [more]
A0A388MCJ1_CHABU1.720e-629.41DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
UPI0008FFA3C21.880e-622.59uncharacterized protein LOC104878865 n=2 Tax=Vitis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5634contigH-elongata_contig5634:1054..2329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.0
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog3827.XP_004513749.1
EggNOG free text desc.Encoded by
EggNOG OGs2CU6P@1,2RJJK@2759,37T0A@33090,3GFI7@35493,4JJ29@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1098
Cds size990
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5634.13079.1prot_H-elongata_contig5634.13079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5634 1054..2043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.984928-CDS-H-elongata_contig5634:1053..20431622930916.984928-CDS-H-elongata_contig5634:1053..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5634 1054..2043 -
1691679623.8625612-CDS-H-elongata_contig5634:1053..20431691679623.8625612-CDS-H-elongata_contig5634:1053..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5634 1054..2043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.007711-UTR-H-elongata_contig5634:2043..20531622930917.007711-UTR-H-elongata_contig5634:2043..2053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5634 2044..2053 -
1691679623.8759778-UTR-H-elongata_contig5634:2043..20531691679623.8759778-UTR-H-elongata_contig5634:2043..2053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5634 2044..2053 -
1622930917.03147-UTR-H-elongata_contig5634:2231..23291622930917.03147-UTR-H-elongata_contig5634:2231..2329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5634 2232..2329 -
1691679623.8846328-UTR-H-elongata_contig5634:2231..23291691679623.8846328-UTR-H-elongata_contig5634:2231..2329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5634 2232..2329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5634.13079.1

>prot_H-elongata_contig5634.13079.1 ID=prot_H-elongata_contig5634.13079.1|Name=mRNA_H-elongata_contig5634.13079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
MKCVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSP
KKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVR
LVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSK
LFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILVAKR
RKYSHTPYLSVAWALGPECHQEKIHGVDNGQVQKDILLVFKRLLFHRTAN
TASEESRKESVSMALAQLAMYKRGTWDGYIYLEYANKMGMAEWWEMYGSM
CAEDMAQVATRVGFKIPSSAATERKWSLHG
back to top

mRNA from alignment at H-elongata_contig5634:1054..2329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5634.13079.1 ID=mRNA_H-elongata_contig5634.13079.1|Name=mRNA_H-elongata_contig5634.13079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1276bp|location=Sequence derived from alignment at H-elongata_contig5634:1054..2329- (Himanthalia elongata Himel1 dioecious)
GACTTTGTGGGCAAGTATATGACCAGAAATGTGGACGCGGTCACATCCGA CGGTGCATGCAGAGGAATGCTCCTCATCCTCGAACAAAAGTCCCCCTAGT AAATTTCAACATTACAGACGTCACGTATACAACTGGCAAATGAACGACAA CAACGATATAACTTATGTTGGCCGTTTCGCCTGTCCGAACTGCACACCAC TTTTGCTCCGCAATCGGAAACTGCGGACATGACTCGTTGCTGCAACTCAC TTGATAATTTATGCGTGATACTCAAGGTTGACTGGCATGAAGTGCGTGGC GCATGGGGTGGATCTACTGCTGAAAGGTATCTCGAACCTACCGTGGGCCT CACAGACAACCACCAAGAACAAGAATGTCGTTCAGTACATCTGCAACCAT AAAAAAACACGTGCTCTTCGCAAGGCAAACTCTCCTAAAAAATGTCTTCT TGTCGCCAACGAAACACGGTTCGCAACCAACTTCCTCTCGGCCAAGCGCA CTTTGGAGATGAGACCGATGCTCGAGGTTGTCTCTAACGACTATGTCTAC GACGACTACGTCAAGTCTGCTACACCAAAGGTGCGTCTGGTCGGCCAGAA AGTGCGAGTAATGCTCAAGGAAGGGGAAGAGTGGCAGGGACAGTTCTGGT TTGAGCTTGAGTTTCTGGTGTCTATCTTGGAGCCGATGTACCTGCTCTTG CGTATAGCTGATGGCGTCAAACTATGCGTGTCGAAGCTGTTTCATCTGTT CAGGCAGCTACCTGAAAAACTAACCAAGATCTGCAAGCAGAAAGCGGCGT TGACGGGGGAAGAAGAGCAGTCGGGCTGGAGAGACGAGGACGTTAAAGAG CGGCTTGGCCCAGTAAACATCCTGGTGGCCAAGCGGCGCAAGTACTCGCA CACCCCCTACCTCTCTGTGGCATGGGCACTCGGTCCCGAATGCCACCAGG AGAAAATACATGGGGTGGACAACGGCCAAGTGCAGAAGGATATACTGCTT GTCTTCAAGCGTCTGCTGTTTCACCGTACCGCCAACACTGCCAGCGAGGA AAGCAGGAAGGAATCTGTCAGCATGGCCCTGGCCCAGCTTGCCATGTACA AGCGCGGCACGTGGGACGGGTACATCTACCTAGAATACGCCAACAAAATG GGCATGGCGGAGTGGTGGGAGATGTACGGTAGCATGTGCGCAGAAGATAT GGCGCAGGTGGCTACTCGTGTAGGATTCAAGATACCGTCATCCGCTGCGA CAGAACGCAAATGGAGCTTGCACGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5634:1054..2329-

>mRNA_H-elongata_contig5634.13079.1 ID=mRNA_H-elongata_contig5634.13079.1|Name=mRNA_H-elongata_contig5634.13079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig5634:1054..2329- (Himanthalia elongata Himel1 dioecious)
ATGAAGTGCGTGGCGCATGGGGTGGATCTACTGCTGAAAGGTATCTCGAA
CCTACCGTGGGCCTCACAGACAACCACCAAGAACAAGAATGTCGTTCAGT
ACATCTGCAACCATAAAAAAACACGTGCTCTTCGCAAGGCAAACTCTCCT
AAAAAATGTCTTCTTGTCGCCAACGAAACACGGTTCGCAACCAACTTCCT
CTCGGCCAAGCGCACTTTGGAGATGAGACCGATGCTCGAGGTTGTCTCTA
ACGACTATGTCTACGACGACTACGTCAAGTCTGCTACACCAAAGGTGCGT
CTGGTCGGCCAGAAAGTGCGAGTAATGCTCAAGGAAGGGGAAGAGTGGCA
GGGACAGTTCTGGTTTGAGCTTGAGTTTCTGGTGTCTATCTTGGAGCCGA
TGTACCTGCTCTTGCGTATAGCTGATGGCGTCAAACTATGCGTGTCGAAG
CTGTTTCATCTGTTCAGGCAGCTACCTGAAAAACTAACCAAGATCTGCAA
GCAGAAAGCGGCGTTGACGGGGGAAGAAGAGCAGTCGGGCTGGAGAGACG
AGGACGTTAAAGAGCGGCTTGGCCCAGTAAACATCCTGGTGGCCAAGCGG
CGCAAGTACTCGCACACCCCCTACCTCTCTGTGGCATGGGCACTCGGTCC
CGAATGCCACCAGGAGAAAATACATGGGGTGGACAACGGCCAAGTGCAGA
AGGATATACTGCTTGTCTTCAAGCGTCTGCTGTTTCACCGTACCGCCAAC
ACTGCCAGCGAGGAAAGCAGGAAGGAATCTGTCAGCATGGCCCTGGCCCA
GCTTGCCATGTACAAGCGCGGCACGTGGGACGGGTACATCTACCTAGAAT
ACGCCAACAAAATGGGCATGGCGGAGTGGTGGGAGATGTACGGTAGCATG
TGCGCAGAAGATATGGCGCAGGTGGCTACTCGTGTAGGATTCAAGATACC
GTCATCCGCTGCGACAGAACGCAAATGGAGCTTGCACGGTATGAAGTGCG
TGGCGCATGGGGTGGATCTACTGCTGAAAGGTATCTCGAACCTACCGTGG
GCCTCACAGACAACCACCAAGAACAAGAATGTCGTTCAGTACATCTGCAA
CCATAAAAAAACACGTGCTCTTCGCAAGGCAAACTCTCCTAAAAAATGTC
TTCTTGTCGCCAACGAAACACGGTTCGCAACCAACTTCCTCTCGGCCAAG
CGCACTTTGGAGATGAGACCGATGCTCGAGGTTGTCTCTAACGACTATGT
CTACGACGACTACGTCAAGTCTGCTACACCAAAGGTGCGTCTGGTCGGCC
AGAAAGTGCGAGTAATGCTCAAGGAAGGGGAAGAGTGGCAGGGACAGTTC
TGGTTTGAGCTTGAGTTTCTGGTGTCTATCTTGGAGCCGATGTACCTGCT
CTTGCGTATAGCTGATGGCGTCAAACTATGCGTGTCGAAGCTGTTTCATC
TGTTCAGGCAGCTACCTGAAAAACTAACCAAGATCTGCAAGCAGAAAGCG
GCGTTGACGGGGGAAGAAGAGCAGTCGGGCTGGAGAGACGAGGACGTTAA
AGAGCGGCTTGGCCCAGTAAACATCCTGGTGGCCAAGCGGCGCAAGTACT
CGCACACCCCCTACCTCTCTGTGGCATGGGCACTCGGTCCCGAATGCCAC
CAGGAGAAAATACATGGGGTGGACAACGGCCAAGTGCAGAAGGATATACT
GCTTGTCTTCAAGCGTCTGCTGTTTCACCGTACCGCCAACACTGCCAGCG
AGGAAAGCAGGAAGGAATCTGTCAGCATGGCCCTGGCCCAGCTTGCCATG
TACAAGCGCGGCACGTGGGACGGGTACATCTACCTAGAATACGCCAACAA
AATGGGCATGGCGGAGTGGTGGGAGATGTACGGTAGCATGTGCGCAGAAG
ATATGGCGCAGGTGGCTACTCGTGTAGGATTCAAGATACCGTCATCCGCT
GCGACAGAACGCAAATGGAGCTTGCACGGT
back to top