mRNA_H-elongata_contig5634.13079.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A1S2Z2D8_CICAR (uncharacterized protein LOC101508631 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Z2D8_CICAR) HSP 1 Score: 87.0 bits (214), Expect = 6.000e-15 Identity = 92/346 (26.59%), Postives = 154/346 (44.51%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNL-PWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILV-----AKRRKYSHTPYLSVAWALG-----PECHQEKIHGV--------DNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMYKRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWSLH 1095
CV H ++L+ K + L W T + K +V+YI NH + A+ +ANS + L VA +TRFA++++ KR L R L + +++K R +G V + G ++ FW E+E +V I +P+YLL++ ADG + + + + ++ +I K E + V R +N + ++ T YLS G P +E + V +N + QK LL + +FH+ +K +M+ AQL + M +WW MYGS +E +A+VA +V + SS++ ER WS +
Sbjct: 236 CVVHTLNLIFKDFAELFEWLRNTYKQGKTIVKYIINHSQVLAMYRANSKLELLKVA-KTRFASHYILLKRLLMCREALATTVVLNSWKEWIKQGDENTRKIGALVAETI--GSDF---FWEEVEHVVKITKPIYLLIKFADGEGPKMGEFYEKIDSMLGEIQEIMKTNKYANCYSEM----ETIVTARWTKMNYTIHCLGFVLNPRFYDTHYLSTPAPGGIARKDPNQDKEVVTVVMQAFEKIFENAEEQK--LLRDQFAIFHK--------KKKGIYAMSAAQLDVVT---------------MDSIDWWSMYGSETSE-LAEVAKKVLSQPISSSSAERTWSTY 545
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI000B781A96 (uncharacterized protein LOC110642122 n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B781A96) HSP 1 Score: 82.4 bits (202), Expect = 2.040e-13 Identity = 90/347 (25.94%), Postives = 150/347 (43.23%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDED--VKERLGPVNI------LVAKRRKYSH----TPYLSVAWALGPECHQEKIHGV--------DNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMYKRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWSLH 1095
C A G ++ W + T + K +V+Y NH + ++ + S + L VA +TRFA++++ KR L R L + ++ K+ K++ G V + + E FW E+E +V+I +P+YLL++ +DG KL ++ ++ L ++ K +T + + + + V ER +NI R Y H TP P +E + GV +NG QK LL + ++FH +K SM AQ+ A M +WW YGS E +A+VA +V + SS++ ER WS +
Sbjct: 308 CKAAGKEIEKDFAQKFDWLNDTYKRGKCIVKYFINHTQALSIFRTQSKLELLKVA-KTRFASHYILLKRLLVCREALATTIVLKSWKEWTKNGDEKMKTTGALVAETISDDE-----FWEEVENIVAITKPLYLLIKFSDGEG---PKLGEIYEKMDSMLGEL---KDIMTNNKYKDSYEQMEAIVVERWAKMNIPMHCLGFALTPRFYDHHYLETPAPGGVPRKAPNLDKEVVLGVMDDFERIAENGAKQK--LLREQFVIFHM---------KKGIYSMPAAQID---------------AVTMDSIDWWSTYGSETPE-LAEVAKKVLSQPISSSSAERNWSTY 615
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI001C690C13 (uncharacterized protein LOC111920429 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C690C13) HSP 1 Score: 71.6 bits (174), Expect = 6.090e-10 Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 28 NVDAVTSDGA--CRGMLLILEQKSP*LTGMKCVAHGVDLLLKGISN-LPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG 537
NV V +D A C+ +E+ + C H ++L+ K ++ W +T + K +V+Y NH + + NS + L VA +TRFA++++ R +E R L + ++VK+ R+VG K+ +K+ QFW ++E +++I +P++LLL+ DG
Sbjct: 298 NVLQVVTDNAANCKAAGREIERIHKHIFWSPCCVHTLNLIFKDLAKEFYWLEETYKRGKGIVKYFINHTHALSFFRENSTLELLKVA-KTRFASHYIVLHRLIECREALSTTIVLNSWREWVKNGDEATRIVGSKIVDTVKD-----DQFWDDVENILAITKPIFLLLKFCDG 464
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI000B780185 (uncharacterized protein LOC110665762 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B780185) HSP 1 Score: 65.5 bits (158), Expect = 4.550e-8 Identity = 41/141 (29.08%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG 537
C A G ++ W + T + K +V+Y+ NH + ++ + S K LL +TRFA++++ KR L R L + ++ K+ K+R +G V + + E FW E+E +V+I +P+YLL++ +DG
Sbjct: 184 CKAAGKEIEKDFAQKFDWLNDTYKRGKCIVKYVINHTQALSIFRTQS-KLELLKVTKTRFASHYILLKRLLVCREALATTIVLKSWKEWTKNGDEKMRTMGALVAETISDDE-----FWEEVENIVAITKPLYLLIKFSDG 318
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A565C9A9_9BRAS (DUF659 domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565C9A9_9BRAS) HSP 1 Score: 63.5 bits (153), Expect = 1.200e-7 Identity = 49/204 (24.02%), Postives = 93/204 (45.59%), Query Frame = 1
Query: 1 DFVGKYMTRNVD--------AVTSDGACRGMLL--ILEQKSP*LTGMKCVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFHLFRQL 582
+++ KY+ ++ V +D A + +L++K P + C AH +DL+L+G+S LPW ++ + K++ +I H KT + + K ++ TRFAT FL+ + + + L+ + + + S K + V FW ++ + P+ +LR+ADG K S F+L+R +
Sbjct: 112 EYIFKYIDNCIEDIGAGKVVQVVTDNATNNVAAAKLLKKKRPNIFWTGCAAHTLDLMLEGVSKLPWFAKVINQAKSLTIFIYAHHKTLFMMRKYKNNKDIVRPGATRFATCFLTLQSLYDKKAQLKSMFGSDEWHECKHSKCVKGKTASDTVM---------SYAFWNNALVVLKVFTPLVKVLRLADGEKKTFSG-FYLWRDI 305
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A388LE59_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LE59_CHABU) HSP 1 Score: 64.7 bits (156), Expect = 1.280e-7 Identity = 48/152 (31.58%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRAL--RKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLF 564
C AH ++LLLK ISN+ W K +N+V++I NH+ T L R + +K L++ E RFA+ +L R + R +L+ + ++ D Y S K R + + ++ WQ +++ ++SI++P+Y LLR+ D L S+L+
Sbjct: 389 CAAHTLNLLLKDISNIAWIKTVWKKGRNLVKFIKNHQSTMGLMSRCSMGDRKVLVMPTEVRFASVYLMLIRIWDRRHVLKHMMDNGWLDIYWSSQ--KDREDAEDIFAHVRCDMWWQ-----KVDTILSIIKPIYDLLRMMDSDGLAHSQLW 533
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI001CC76817 (uncharacterized protein LOC122650773 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC76817) HSP 1 Score: 62.4 bits (150), Expect = 5.190e-7 Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 76 ILEQKSP*LTGMKCVAHGVDLLLKGI-SNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVV--SNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG 537
++ +K P + + C AHGV LLLK I + + W + K K VV ++ H AL + + K L +TRFA NF K L++ +L V+ S ++ + +S +G V +++ E FW + ++SILEP+ ++LR+ DG
Sbjct: 75 LIMEKYPHIHRVTCAAHGVQLLLKDIDARISWVKEVFDKAKLVVGFMYKHGTVLALMRECTGGKELKKPCKTRFAYNFFMLKSILDVEDLLRVMVASAEWRINKNYRSD------LGAMVTQIIQSTE-----FWLNAKDVLSILEPLIIVLRLVDG 220
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI0008FF7D69 (uncharacterized protein LOC100853850 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FF7D69) HSP 1 Score: 61.6 bits (148), Expect = 1.020e-6 Identity = 77/332 (23.19%), Postives = 142/332 (42.77%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKC---LLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG-VKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILVAKRRKYSHTPYLSVAWALGPECHQEKIHGVDNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMY---KRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWS 1089
C AH +DL+ + I P + + + +I NH A K C ++ TRFATN+++ L+ R L+ + ++ D++ + + +L G+++ +L + +W L +VS+ EP+Y++LR+ D V + ++ L + E L + + W + +++R +K P + A+ L P + G D +Q + VF +L + ES+ +L ++ KRG D + + M AEWW MYG+ + ++A +V + SS+A ER WS
Sbjct: 205 CAAHCIDLIFEDIGKKPNVIEVINNARKITNFIYNH----GWLLAQMRKYCGGDIVRPGATRFATNYIALDSLLKKRADLKKL---FMSDEWAQHKLSRTKL-GRELEQLL-----FDHTYWDRLTNIVSLYEPLYVVLRLVDSEVVPTMPFVYELMHVMKENLIR-----------QGAGDWMFKIIQDRW----------QKTLKHPLHAAAYFLNPRFQYRRGVGSDPELLQA-VHDVFAKL-----------DPTTESLGQFGNELVLFRDAKRGFGDRAA-IASRSTMVPAEWWFMYGNQ-TPTLRKLAIKVLSQTASSSACERNWS 488
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: A0A388MCJ1_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MCJ1_CHABU) HSP 1 Score: 61.2 bits (147), Expect = 1.720e-6 Identity = 45/153 (29.41%), Postives = 81/153 (52.94%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRAL--RKANSPKKCLLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADGVKLCVSKLFH 567
C AH + LLLK ISN+ W K +N+V++I NH+ T L R + +K L++ E RF + + R + R +L+ + ++ D Y S K R + + ++ WQ +++ ++SI++P+Y LLR+ D + +S+L+
Sbjct: 158 CAAHTLSLLLKDISNIAWIKTVWKKGRNLVKFIKNHQSTMGLLSRCSMGDRKVLVMPTEVRFTSVYQMLIRIWDRRHVLKHMMDNGWLDIYWSSW--KDREDAEDIFAHVRCDIRWQ-----KVDTILSIMKPIYDLLRMMDSDGVALSQLWR 303
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Match: UPI0008FFA3C2 (uncharacterized protein LOC104878865 n=2 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FFA3C2) HSP 1 Score: 60.8 bits (146), Expect = 1.880e-6 Identity = 75/332 (22.59%), Postives = 143/332 (43.07%), Query Frame = 1
Query: 115 CVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPKKC---LLVANETRFATNFLSAKRTLEMRPMLEVVSNDYVYDDYVKSATPKVRLVGQKVRVMLKEGEEWQGQFWFELEFLVSILEPMYLLLRIADG-VKLCVSKLFHLFRQLPEKLTKICKQKAALTGEEEQSGWRDEDVKERLGPVNILVAKRRKYSHTPYLSVAWALGPECHQEKIHGVDNGQVQKDILLVFKRLLFHRTANTASEESRKESVSMALAQLAMY---KRGTWDGYIYLEYANKMGMAEWWEMYGSMCAEDMAQVATRVGFKIPSSAATERKWS 1089
C AH +DL+ + I P + + + +I NH A K C ++ TRFATN+++ L+ R L+ + ++ D++ + + +L G+++ +L + +W L +VS+ EP+Y++LR+ D + + ++ L + + E L + + W + +++R +K P + A+ L P + G D +Q + VF +L + +S+ +L ++ KRG D + + M AEWW MYG+ + ++A +V + SS+A ER WS
Sbjct: 146 CAAHCIDLIFEDIGKRPNVIEVINNARKITNFIYNH----GWLLAQMRKYCGGDIVRPGATRFATNYIALDSLLKKRADLKKL---FISDEWAQHKLSRTKL-GRELEQLL-----FDHTYWDRLTNIVSLYEPLYVVLRLVDSEIVPTMPFVYELMQVMKENLIR-----------QGAGDWMFKIIQDRW----------QKTLKHPLHAAAYFLNPRFQYRRGVGSDPELLQA-VHDVFAKL-----------DPTTKSLGQFGNELVLFRDAKRGFGDRAA-IASRSTMVPAEWWFMYGNQ-TPTLRKLAIKVLSQTASSSACERNWS 429 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5634.13079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5634.13079.1 >prot_H-elongata_contig5634.13079.1 ID=prot_H-elongata_contig5634.13079.1|Name=mRNA_H-elongata_contig5634.13079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp MKCVAHGVDLLLKGISNLPWASQTTTKNKNVVQYICNHKKTRALRKANSPback to top mRNA from alignment at H-elongata_contig5634:1054..2329- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5634.13079.1 ID=mRNA_H-elongata_contig5634.13079.1|Name=mRNA_H-elongata_contig5634.13079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1276bp|location=Sequence derived from alignment at H-elongata_contig5634:1054..2329- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5634:1054..2329- >mRNA_H-elongata_contig5634.13079.1 ID=mRNA_H-elongata_contig5634.13079.1|Name=mRNA_H-elongata_contig5634.13079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig5634:1054..2329- (Himanthalia elongata Himel1 dioecious)back to top |