mRNA_H-elongata_contig56310.13076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56310.13076.1
Unique NamemRNA_H-elongata_contig56310.13076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56310.13076.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 4.630e-46
Identity = 109/230 (47.39%), Postives = 135/230 (58.70%), Query Frame = 2 
Query:  173 PGPVGRVSLWLDMRTALLPALQTLRVLYDELRGHEEALGRNPDDPDSSLRRVPDPVGALLYASEPEGRAAREYQQLG---GALPCYRVAAADGDCMKVFDVPGGNVVGVALDPVSGISG---EHMGASAATEVVAAAQRAKESMVLLDSVRPSAWVDGDVATVVRIAASACAGSGKALVISVRSVGQLHDAAMAALAASQTQILGQAIDCDIVLLIEPAAALWEAGLLYL 844
            PG    V+LWLDMRTA+LPA QTL+ LY ELR  EEALGR+P+D D +L RVP+PVGALLYA+EPE RAA E   LG    ALPC+R+   DG  + V DV  G+VVGV +DPV   +                         +V L  VRPS W  GD+ TV+RIA+SACAG+GK LV++   +G      +    A++           + LLIEP   LWEAGLLYL
Sbjct:   99 PGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAV-VVDVSSGHVVGVRVDPVGDNAAGXXXXXXXXXXXXXXXXXXXXXXGLVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVTTTVLG------VGGTGAAEDGTTPP----PMALLIEPMPELWEAGLLYL 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56310.13076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI4.630e-4647.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56310contigH-elongata_contig56310:2233..3707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Exons1
Model size1475
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56310.13076.1prot_H-elongata_contig56310.13076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56310 2441..3079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.743604-UTR-H-elongata_contig56310:2232..24401622930916.743604-UTR-H-elongata_contig56310:2232..2440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56310 2233..2440 +
1691679623.775743-UTR-H-elongata_contig56310:2232..24401691679623.775743-UTR-H-elongata_contig56310:2232..2440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56310 2233..2440 +
1622930916.776417-UTR-H-elongata_contig56310:3079..37071622930916.776417-UTR-H-elongata_contig56310:3079..3707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56310 3080..3707 +
1691679623.7960641-UTR-H-elongata_contig56310:3079..37071691679623.7960641-UTR-H-elongata_contig56310:3079..3707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56310 3080..3707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.7586176-CDS-H-elongata_contig56310:2440..30791622930916.7586176-CDS-H-elongata_contig56310:2440..3079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56310 2441..3079 +
1691679623.784311-CDS-H-elongata_contig56310:2440..30791691679623.784311-CDS-H-elongata_contig56310:2440..3079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56310 2441..3079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56310.13076.1

>prot_H-elongata_contig56310.13076.1 ID=prot_H-elongata_contig56310.13076.1|Name=mRNA_H-elongata_contig56310.13076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
MRTALLPALQTLRVLYDELRGHEEALGRNPDDPDSSLRRVPDPVGALLYA
SEPEGRAAREYQQLGGALPCYRVAAADGDCMKVFDVPGGNVVGVALDPVS
GISGEHMGASAATEVVAAAQRAKESMVLLDSVRPSAWVDGDVATVVRIAA
SACAGSGKALVISVRSVGQLHDAAMAALAASQTQILGQAIDCDIVLLIEP
AAALWEAGLLYL*
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mRNA from alignment at H-elongata_contig56310:2233..3707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56310.13076.1 ID=mRNA_H-elongata_contig56310.13076.1|Name=mRNA_H-elongata_contig56310.13076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1475bp|location=Sequence derived from alignment at H-elongata_contig56310:2233..3707+ (Himanthalia elongata Himel1 dioecious)
GATCAAAGCCACCGTGATTCCGGCAGCAAACGGCCGAGCGACGTCATATT
TACGACCAAAACACGCCACCACCGGCAATAGTGGAAACCCATCGCTCGGG
GGATTGAAGCCGAAGCTTGCGACTTGGACAGGGGAAACCGAAGTGGAGGC
CACGGTGGGCGGGGGCAACACACCCGGCCCGGTGGGACGCGTGAGCCTGT
GGCTGGACATGCGCACGGCGCTGCTCCCCGCCCTGCAGACCCTCCGGGTC
CTCTACGACGAACTCCGTGGCCACGAGGAGGCGCTGGGGCGCAACCCGGA
CGATCCGGACTCGAGCCTCCGGCGCGTGCCAGATCCGGTTGGGGCCCTTC
TCTACGCCTCCGAGCCCGAGGGGAGGGCGGCGAGGGAATATCAGCAGCTC
GGTGGCGCGCTTCCGTGTTACCGGGTTGCCGCGGCTGATGGCGACTGCAT
GAAAGTGTTCGACGTCCCGGGTGGCAACGTTGTCGGAGTTGCGCTCGATC
CCGTGAGTGGCATTAGCGGAGAACATATGGGGGCCAGCGCAGCGACGGAG
GTAGTGGCGGCGGCGCAACGGGCGAAGGAGAGTATGGTGCTTCTCGACAG
CGTAAGACCATCCGCATGGGTGGACGGAGACGTCGCGACCGTCGTCCGTA
TCGCGGCGAGCGCATGCGCGGGTTCGGGAAAGGCACTGGTCATCTCGGTG
CGGAGCGTGGGACAGCTGCACGACGCTGCCATGGCGGCGCTGGCCGCTTC
GCAGACGCAGATTTTAGGCCAAGCAATAGACTGCGACATCGTCCTATTGA
TCGAGCCCGCAGCTGCACTTTGGGAAGCCGGTTTGCTGTACCTTTAATGC
CTTGGCCGAGACTTTTGCCGGATACGAGCCTCGCTGTACACGACATAGCC
GGTGGTGACCATATAATTATGCGCTTGATACTTTAAAATCATTCAAAAAC
GGTGAATATTTTCAAAGAGGCGGGGGGTGGGGTACATGCGTGTGTATGTC
CTCTATATTACCAACCGATCATGCCCCTACCATGCCGACTACGATACGGT
TTATCATGTGTGAAGATTCTGTGCTGAAAGGTAGTAATGTACACATTCGA
ACCTGACGATACAGTATGGGCCTGCAGATAATAAACTCTTATTTGGGCGG
AGGTCTCAAAAGCCTTTTTTCGGACAGACGTGTGAGCTGAATTTCTTAAA
TGGCCAATTTCTTATTTTGGTTTCAAGTAAAATATCGAGGCATTTGTGGA
GCGGGAAAATAGAAAATAATCAAATTATTGAGGAATTTGGAGCGGGCATA
CCCCTGCCTGACGGATCTTCGTGTTTCTTGTTGACCTGTCGTGTCCCCAA
GCCTCCGTTTCTTATACCAACTGCACCCGAGATTAGCGCGTTTCTTATTT
TGTCATTTCTTATCTTGTGTCAGCGAATGAGCCCAATTTCTTATGACAAA
TTTCTTAATTTCCAAACACTTCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig56310:2233..3707+

>mRNA_H-elongata_contig56310.13076.1 ID=mRNA_H-elongata_contig56310.13076.1|Name=mRNA_H-elongata_contig56310.13076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig56310:2233..3707+ (Himanthalia elongata Himel1 dioecious)
ATGCGCACGGCGCTGCTCCCCGCCCTGCAGACCCTCCGGGTCCTCTACGA
CGAACTCCGTGGCCACGAGGAGGCGCTGGGGCGCAACCCGGACGATCCGG
ACTCGAGCCTCCGGCGCGTGCCAGATCCGGTTGGGGCCCTTCTCTACGCC
TCCGAGCCCGAGGGGAGGGCGGCGAGGGAATATCAGCAGCTCGGTGGCGC
GCTTCCGTGTTACCGGGTTGCCGCGGCTGATGGCGACTGCATGAAAGTGT
TCGACGTCCCGGGTGGCAACGTTGTCGGAGTTGCGCTCGATCCCGTGAGT
GGCATTAGCGGAGAACATATGGGGGCCAGCGCAGCGACGGAGGTAGTGGC
GGCGGCGCAACGGGCGAAGGAGAGTATGGTGCTTCTCGACAGCGTAAGAC
CATCCGCATGGGTGGACGGAGACGTCGCGACCGTCGTCCGTATCGCGGCG
AGCGCATGCGCGGGTTCGGGAAAGGCACTGGTCATCTCGGTGCGGAGCGT
GGGACAGCTGCACGACGCTGCCATGGCGGCGCTGGCCGCTTCGCAGACGC
AGATTTTAGGCCAAGCAATAGACTGCGACATCGTCCTATTGATCGAGCCC
GCAGCTGCACTTTGGGAAGCCGGTTTGCTGTACCTTTAAATGCGCACGGC
GCTGCTCCCCGCCCTGCAGACCCTCCGGGTCCTCTACGACGAACTCCGTG
GCCACGAGGAGGCGCTGGGGCGCAACCCGGACGATCCGGACTCGAGCCTC
CGGCGCGTGCCAGATCCGGTTGGGGCCCTTCTCTACGCCTCCGAGCCCGA
GGGGAGGGCGGCGAGGGAATATCAGCAGCTCGGTGGCGCGCTTCCGTGTT
ACCGGGTTGCCGCGGCTGATGGCGACTGCATGAAAGTGTTCGACGTCCCG
GGTGGCAACGTTGTCGGAGTTGCGCTCGATCCCGTGAGTGGCATTAGCGG
AGAACATATGGGGGCCAGCGCAGCGACGGAGGTAGTGGCGGCGGCGCAAC
GGGCGAAGGAGAGTATGGTGCTTCTCGACAGCGTAAGACCATCCGCATGG
GTGGACGGAGACGTCGCGACCGTCGTCCGTATCGCGGCGAGCGCATGCGC
GGGTTCGGGAAAGGCACTGGTCATCTCGGTGCGGAGCGTGGGACAGCTGC
ACGACGCTGCCATGGCGGCGCTGGCCGCTTCGCAGACGCAGATTTTAGGC
CAAGCAATAGACTGCGACATCGTCCTATTGATCGAGCCCGCAGCTGCACT
TTGGGAAGCCGGTTTGCTGTACCTTTAA
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