mRNA_H-elongata_contig56229.13068.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56229.13068.1
Unique NamemRNA_H-elongata_contig56229.13068.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 7.150e-71
Identity = 104/125 (83.20%), Postives = 117/125 (93.60%), Query Frame = 1 
Query:    1 NDTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAGTKFSEAGVHLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 375
            ND VYL+EPLSFTWA+G+G +PRQ W++NQAVVWDKCMVLAAQALSYADTVYNMLEDS G+KF+EAG HLR AAGIFERLHK ELPRWVG+T++APRLVEA+PG+CEGLV FCLAEAQQMAIGKA
Sbjct:   96 NDVVYLNEPLSFTWATGLGERPRQDWITNQAVVWDKCMVLAAQALSYADTVYNMLEDSQGSKFTEAGEHLRKAAGIFERLHKAELPRWVGDTSEAPRLVEAEPGICEGLVHFCLAEAQQMAIGKA 220
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BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: A0A836CJ99_9STRA (BRO1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ99_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.010e-43
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 1 
Query:    4 DTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAG---TKFSEAGVHLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 375
            D VYL  PL F WASG+GI PR +W+SNQAVVWDKCM L +QAL++AD+VYNM+  +AG     ++ AG  LRTAAG+       ELPRWVGETA+  R  EA PGVCE L   CLA+AQQMA+GKA
Sbjct:   98 DPVYLEAPLRFDWASGLGINPRVTWISNQAVVWDKCMALISQALAHADSVYNMVGAAAGGDDAVYAAAGRELRTAAGVLAHTASEELPRWVGETAKGERPPEAVPGVCEALSTLCLAQAQQMALGKA 224
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BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: Q54H07_DICDI (BRO1 domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54H07_DICDI)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-6
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 1 
Query:    1 NDTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAGTKFSEAGV----HLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 375
            N+++ L+E LSF+W+S  G K   S+ S  ++ ++  M L   AL++ +    + + S  + F E       HL+ AAGIF  +  VELPRW+      P   E   G    + + CL+ A  +   KA
Sbjct:   83 NNSLRLNEQLSFSWSSITGNK--SSFYSGFSLRFELIMSLVVYALAHYNRASEINDCSNESSFDENAKLMVNHLKIAAGIFNFITSVELPRWMNLPEDRP--TECRQGFSLAMYELCLSTALSITARKA 207
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BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: UPI000644ADCF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644ADCF)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-5
Identity = 33/127 (25.98%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    7 TVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAGTKFSEAGV----HLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 375
            T  L+E +SF W+S I     +++ S  ++ ++  MVL +  +++ +  Y++ E S    F +       H++ AAGIFE +++VE+PR V +T +    +E    +   +   C++    + + KA
Sbjct:   86 TFRLNEHMSFKWSSFIS----KTFNSGYSIRFELVMVLMSLGMAHYNRAYDLNESSNEDNFDDNAKLISNHIKIAAGIFEFINRVEIPRGVHQTDEFQ--IECSSNMSLAMTMLCISLGNALTVRKA 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FU11_ECTSI7.150e-7183.20BRO1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CJ99_9STRA1.010e-4360.63BRO1-like domain-containing protein n=1 Tax=Tribon... [more]
Q54H07_DICDI1.310e-631.01BRO1 domain-containing protein n=1 Tax=Dictyosteli... [more]
UPI000644ADCF1.540e-525.98hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56229contigH-elongata_contig56229:2295..3749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue1e-56
Seed eggNOG ortholog2880.D7FU11
EggNOG free text desc.BRO1-like domain
EggNOG OGs2E3RK@1,2SAS3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size432
Cds size432
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56229.13068.1prot_H-elongata_contig56229.13068.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56229 2295..3749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.7312322-CDS-H-elongata_contig56229:2294..24801622930915.7312322-CDS-H-elongata_contig56229:2294..2480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 2295..2480 -
1691679623.3220851-CDS-H-elongata_contig56229:2294..24801691679623.3220851-CDS-H-elongata_contig56229:2294..2480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 2295..2480 -
1622930915.7499828-CDS-H-elongata_contig56229:2753..28571622930915.7499828-CDS-H-elongata_contig56229:2753..2857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 2754..2857 -
1691679623.3379838-CDS-H-elongata_contig56229:2753..28571691679623.3379838-CDS-H-elongata_contig56229:2753..2857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 2754..2857 -
1622930915.767953-CDS-H-elongata_contig56229:3193..32721622930915.767953-CDS-H-elongata_contig56229:3193..3272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 3194..3272 -
1691679623.3563554-CDS-H-elongata_contig56229:3193..32721691679623.3563554-CDS-H-elongata_contig56229:3193..3272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 3194..3272 -
1622930915.7843487-CDS-H-elongata_contig56229:3686..37491622930915.7843487-CDS-H-elongata_contig56229:3686..3749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 3687..3749 -
1691679623.3729868-CDS-H-elongata_contig56229:3686..37491691679623.3729868-CDS-H-elongata_contig56229:3686..3749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 3687..3749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56229.13068.1

>prot_H-elongata_contig56229.13068.1 ID=prot_H-elongata_contig56229.13068.1|Name=mRNA_H-elongata_contig56229.13068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
NDTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADT
VYNMLEDSAGTKFSEAGVHLRTAAGIFERLHKVELPRWVGETAQAPRLVE
ADPGVCEGLVKFCLAEAQQMAIGKARYPLLSSIAERLIDCLIE*
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mRNA from alignment at H-elongata_contig56229:2295..3749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56229.13068.1 ID=mRNA_H-elongata_contig56229.13068.1|Name=mRNA_H-elongata_contig56229.13068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1455bp|location=Sequence derived from alignment at H-elongata_contig56229:2295..3749- (Himanthalia elongata Himel1 dioecious)
AATGATACGGTTTATCTCAGCGAACCCTTGTCCTTCACGTGGGCGTCAGG
GATCGGAATCAAGGTGAGGGCGAGGGTTTGTTTGGACATGGTATATATCT
TATTAAGCTCTAGACCATCAGCCATCAATTCATCAATTATTTTTTTTAAG
AAGAAAAAAACGAGAAAGGCCGGGAAGGCGTAGTATCCTGTGACTTGCCA
TAGATATTCCCTCTTGACCCCGAGAACAAACGCTCGACCCTAATAGTTAA
CCCTTGATATTTAGTCTTATTCTTTGAATTGTTAGTATTGATGGGTTACC
GATGCTTGCGTTGTACTATTTCTATAAGAGAGCACTTGTTATCTCTCAAG
CCGGCGGCCATCAGCCAAACGATACTAATCCTCCTGCTCGTCTCCGCTCT
CTTCCTCACGCCTAGACATATCGACGCAGTCACCATCACCGCACGCGTTT
TTTGTTGTTGTTGTTTTTTTGCGACAGCCTCGGCAGTCTTGGGTCAGCAA
TCAGGCGGTCGTGTGGGACAAGTGCATGGTTCTGGCCGCTCAGGCGCTGT
CGTACGGTGAAAGCACAACGGGTCTCCCGGTGTGGCACGATATGGAAAAA
AAGGGGGGAATAGGATTTTGCTCTCTTGTTCTCTACTCTATTTTTGAATA
ATATGCGAGATGTGATAAAAGACACAAATATGTTTAATTTCTTTTAAAGT
ATTCAGTTCTCTGTAAGAGAAGGAGAAAAAGGGGGAGAGGGCCCTTCCGC
GTGTTTTCATCCCTTGTTCCGCGTATCATGCCGGCTGTATCGCCAGAGCT
TGATTCATGCAGCTCGATCACGAAGTGTTGGAAACCGCGCCCTTCTCCGC
CCCCCCCCCATCTTTCGTGCCCACGTTGCTTCTTCGCCCCAGCCGACACC
GTCTACAACATGCTGGAGGACAGCGCGGGCACCAAGTTCAGCGAAGCAGG
GGTGCACCTGAGGACGGCGGCGGGGATATTCGAGAGACTTCACAAGGTTG
GTTCGATGCGGTCCTCTGCCCCTCTTACTTAACTTCGTCGCCACCTTCGA
ATAGTTTATTGTTGCTTTTTAATTAAAAACAGGAAGGGCGGCGAGAGCCC
TCCCGTTACCTGTTTCTGTTTCTGTTTGTTTTTTTTCTTCTCTTTTTCTT
GGAACCAGTAGGCGGCAAGCCTTCCATTTTTATTTTTACTTGAAAAAAAA
TAAGGAAACGTTTTAAGGGTAATCCTTTCTTTGCTGTTTTTGTTTTCTCT
CTTGTTTTACGGTTGCCAGGTGGAATTGCCCAGATGGGTTGGAGAGACCG
CCCAGGCACCCCGTCTGGTTGAGGCAGATCCGGGGGTGTGCGAAGGTCTC
GTGAAGTTCTGCCTCGCCGAAGCACAGCAGATGGCTATTGGCAAGGCAAG
ATATCCCCTCCTTTCCTCTATTGCAGAACGATTGATTGATTGTTTGATTG
AGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56229:2295..3749-

>mRNA_H-elongata_contig56229.13068.1 ID=mRNA_H-elongata_contig56229.13068.1|Name=mRNA_H-elongata_contig56229.13068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig56229:2295..3749- (Himanthalia elongata Himel1 dioecious)
AATGATACGGTTTATCTCAGCGAACCCTTGTCCTTCACGTGGGCGTCAGG
GATCGGAATCAAGAATGATACGGTTTATCTCAGCGAACCCTTGTCCTTCA
CGTGGGCGTCAGGGATCGGAATCAAGCCTCGGCAGTCTTGGGTCAGCAAT
CAGGCGGTCGTGTGGGACAAGTGCATGGTTCTGGCCGCTCAGGCGCTGTC
GTACGCCTCGGCAGTCTTGGGTCAGCAATCAGGCGGTCGTGTGGGACAAG
TGCATGGTTCTGGCCGCTCAGGCGCTGTCGTACGCCGACACCGTCTACAA
CATGCTGGAGGACAGCGCGGGCACCAAGTTCAGCGAAGCAGGGGTGCACC
TGAGGACGGCGGCGGGGATATTCGAGAGACTTCACAAGCCGACACCGTCT
ACAACATGCTGGAGGACAGCGCGGGCACCAAGTTCAGCGAAGCAGGGGTG
CACCTGAGGACGGCGGCGGGGATATTCGAGAGACTTCACAAGGTGGAATT
GCCCAGATGGGTTGGAGAGACCGCCCAGGCACCCCGTCTGGTTGAGGCAG
ATCCGGGGGTGTGCGAAGGTCTCGTGAAGTTCTGCCTCGCCGAAGCACAG
CAGATGGCTATTGGCAAGGCAAGATATCCCCTCCTTTCCTCTATTGCAGA
ACGATTGATTGATTGTTTGATTGAGTGAGTGGAATTGCCCAGATGGGTTG
GAGAGACCGCCCAGGCACCCCGTCTGGTTGAGGCAGATCCGGGGGTGTGC
GAAGGTCTCGTGAAGTTCTGCCTCGCCGAAGCACAGCAGATGGCTATTGG
CAAGGCAAGATATCCCCTCCTTTCCTCTATTGCAGAACGATTGATTGATT
GTTTGATTGAGTGA
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