prot_H-elongata_contig56229.13068.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56229.13068.1
Unique Nameprot_H-elongata_contig56229.13068.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length144
Homology
BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 7.150e-71
Identity = 104/125 (83.20%), Postives = 117/125 (93.60%), Query Frame = 0
Query:    1 NDTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAGTKFSEAGVHLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 125
            ND VYL+EPLSFTWA+G+G +PRQ W++NQAVVWDKCMVLAAQALSYADTVYNMLEDS G+KF+EAG HLR AAGIFERLHK ELPRWVG+T++APRLVEA+PG+CEGLV FCLAEAQQMAIGKA
Sbjct:   96 NDVVYLNEPLSFTWATGLGERPRQDWITNQAVVWDKCMVLAAQALSYADTVYNMLEDSQGSKFTEAGEHLRKAAGIFERLHKAELPRWVGDTSEAPRLVEAEPGICEGLVHFCLAEAQQMAIGKA 220          
BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: A0A836CJ99_9STRA (BRO1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ99_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.010e-43
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 0
Query:    2 DTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAG---TKFSEAGVHLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 125
            D VYL  PL F WASG+GI PR +W+SNQAVVWDKCM L +QAL++AD+VYNM+  +AG     ++ AG  LRTAAG+       ELPRWVGETA+  R  EA PGVCE L   CLA+AQQMA+GKA
Sbjct:   98 DPVYLEAPLRFDWASGLGINPRVTWISNQAVVWDKCMALISQALAHADSVYNMVGAAAGGDDAVYAAAGRELRTAAGVLAHTASEELPRWVGETAKGERPPEAVPGVCEALSTLCLAQAQQMALGKA 224          
BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: Q54H07_DICDI (BRO1 domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54H07_DICDI)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-6
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 0
Query:    1 NDTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAGTKFSEAGV----HLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 125
            N+++ L+E LSF+W+S  G K   S+ S  ++ ++  M L   AL++ +    + + S  + F E       HL+ AAGIF  +  VELPRW+      P   E   G    + + CL+ A  +   KA
Sbjct:   83 NNSLRLNEQLSFSWSSITGNK--SSFYSGFSLRFELIMSLVVYALAHYNRASEINDCSNESSFDENAKLMVNHLKIAAGIFNFITSVELPRWMNLPEDRP--TECRQGFSLAMYELCLSTALSITARKA 207          
BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Match: UPI000644ADCF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644ADCF)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-5
Identity = 33/127 (25.98%), Postives = 66/127 (51.97%), Query Frame = 0
Query:    3 TVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADTVYNMLEDSAGTKFSEAGV----HLRTAAGIFERLHKVELPRWVGETAQAPRLVEADPGVCEGLVKFCLAEAQQMAIGKA 125
            T  L+E +SF W+S I     +++ S  ++ ++  MVL +  +++ +  Y++ E S    F +       H++ AAGIFE +++VE+PR V +T +    +E    +   +   C++    + + KA
Sbjct:   86 TFRLNEHMSFKWSSFIS----KTFNSGYSIRFELVMVLMSLGMAHYNRAYDLNESSNEDNFDDNAKLISNHIKIAAGIFEFINRVEIPRGVHQTDEFQ--IECSSNMSLAMTMLCISLGNALTVRKA 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56229.13068.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FU11_ECTSI7.150e-7183.20BRO1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CJ99_9STRA1.010e-4360.63BRO1-like domain-containing protein n=1 Tax=Tribon... [more]
Q54H07_DICDI1.310e-631.01BRO1 domain-containing protein n=1 Tax=Dictyosteli... [more]
UPI000644ADCF1.540e-525.98hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038499BRO1 domain superfamilyGENE3D1.25.40.280coord: 1..128
e-value: 1.2E-9
score: 39.7
IPR038898BRO1 domain-containing protein BROXPANTHERPTHR23032UNCHARACTERIZEDcoord: 4..126
NoneNo IPR availablePANTHERPTHR23032:SF7ENDOSOMAL TARGETING BRO1-LIKE DOMAIN-CONTAINING PROTEINcoord: 4..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56229contigH-elongata_contig56229:2295..3749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56229.13068.1mRNA_H-elongata_contig56229.13068.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56229 2295..3749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56229.13068.1 ID=prot_H-elongata_contig56229.13068.1|Name=mRNA_H-elongata_contig56229.13068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
NDTVYLSEPLSFTWASGIGIKPRQSWVSNQAVVWDKCMVLAAQALSYADT
VYNMLEDSAGTKFSEAGVHLRTAAGIFERLHKVELPRWVGETAQAPRLVE
ADPGVCEGLVKFCLAEAQQMAIGKARYPLLSSIAERLIDCLIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038499BRO1_sf
IPR038898BROX