mRNA_H-elongata_contig56171.13060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56171.13060.1
Unique NamemRNA_H-elongata_contig56171.13060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig56171.13060.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.330e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 MIDVVKKRCTGEGCFKQPMYRVVGSKKAEYCVVHSLEGMI 120
            M+DVV KRC   GC K+P Y   GSKKAE C  H+L+GM+
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56171.13060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI4.330e-657.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56171contigH-elongata_contig56171:796..1152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930914.899747-CDS-H-elongata_contig56171:795..11521622930914.899747-CDS-H-elongata_contig56171:795..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56171 796..1152 +
1691679622.9904509-CDS-H-elongata_contig56171:795..11521691679622.9904509-CDS-H-elongata_contig56171:795..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56171 796..1152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56171.13060.1prot_H-elongata_contig56171.13060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56171 796..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56171.13060.1

>prot_H-elongata_contig56171.13060.1 ID=prot_H-elongata_contig56171.13060.1|Name=mRNA_H-elongata_contig56171.13060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MIDVVKKRCTGEGCFKQPMYRVVGSKKAEYCVVHSLEGMINDKRKMCDKD
ECFRQPSHGVAGSKKPEYCAVHDLEGMIGVVNNICARDGCMKRLSYGLAG
SKKAEYGAVHALQGIIDVA
back to top

mRNA from alignment at H-elongata_contig56171:796..1152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56171.13060.1 ID=mRNA_H-elongata_contig56171.13060.1|Name=mRNA_H-elongata_contig56171.13060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig56171:796..1152+ (Himanthalia elongata Himel1 dioecious)
ATGATCGACGTTGTGAAAAAGAGGTGTACAGGTGAGGGATGTTTTAAGCA
ACCTATGTATAGGGTGGTTGGCAGCAAGAAAGCGGAATACTGCGTGGTGC
ATTCCTTAGAAGGGATGATCAACGATAAACGCAAGATGTGTGATAAGGAT
GAATGCTTTAGGCAACCGAGTCATGGCGTGGCTGGCAGTAAGAAGCCGGA
GTACTGCGCGGTACATGATTTGGAAGGGATGATCGGTGTTGTGAACAATA
TATGTGCTAGAGATGGATGCATGAAGCGTCTGAGTTATGGTCTAGCCGGT
AGCAAGAAAGCGGAATATGGCGCGGTGCATGCTTTGCAAGGAATTATTGA
TGTTGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig56171:796..1152+

>mRNA_H-elongata_contig56171.13060.1 ID=mRNA_H-elongata_contig56171.13060.1|Name=mRNA_H-elongata_contig56171.13060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig56171:796..1152+ (Himanthalia elongata Himel1 dioecious)
ATGATCGACGTTGTGAAAAAGAGGTGTACAGGTGAGGGATGTTTTAAGCA
ACCTATGTATAGGGTGGTTGGCAGCAAGAAAGCGGAATACTGCGTGGTGC
ATTCCTTAGAAGGGATGATCAACGATAAACGCAAGATGTGTGATAAGGAT
GAATGCTTTAGGCAACCGAGTCATGGCGTGGCTGGCAGTAAGAAGCCGGA
GTACTGCGCGGTACATGATTTGGAAGGGATGATCGGTGTTGTGAACAATA
TATGTGCTAGAGATGGATGCATGAAGCGTCTGAGTTATGGTCTAGCCGGT
AGCAAGAAAGCGGAATATGGCGCGGTGCATGCTTTGCAAGGAATTATTGA
TGTTGCGATGATCGACGTTGTGAAAAAGAGGTGTACAGGTGAGGGATGTT
TTAAGCAACCTATGTATAGGGTGGTTGGCAGCAAGAAAGCGGAATACTGC
GTGGTGCATTCCTTAGAAGGGATGATCAACGATAAACGCAAGATGTGTGA
TAAGGATGAATGCTTTAGGCAACCGAGTCATGGCGTGGCTGGCAGTAAGA
AGCCGGAGTACTGCGCGGTACATGATTTGGAAGGGATGATCGGTGTTGTG
AACAATATATGTGCTAGAGATGGATGCATGAAGCGTCTGAGTTATGGTCT
AGCCGGTAGCAAGAAAGCGGAATATGGCGCGGTGCATGCTTTGCAAGGAA
TTATTGATGTTGCG
back to top