mRNA_H-elongata_contig56121.13054.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56121.13054.1
Unique NamemRNA_H-elongata_contig56121.13054.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56121.13054.1 vs. uniprot
Match: D8LD17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD17_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.520e-54
Identity = 106/142 (74.65%), Postives = 111/142 (78.17%), Query Frame = 1 
Query:    1 QVRDGLVTVVLPLLLGRRGVLLQVLTRERVELVHDIQIRVTPVAGRRDAPFHARTA------SARRRRAPVGEREHGARIRDMVMKAAHAGYVEEDEAGGDGR----------AWRTPLASVDSLSRQLKDTWENFNANFAS 378
             VRDG+V+VVLPLLLGRRGVLLQVLTRERVELVHD+QIRVTPVAGRRDAP  ART+      S  R   PVGEREHGARIRDMVMKAAH GYVEEDE G              AWRTPLASVDSLSRQLKDTWE FNANFA+
Sbjct:  623 DVRDGMVSVVLPLLLGRRGVLLQVLTRERVELVHDVQIRVTPVAGRRDAPPSARTSLGGGGGSRWRPAPPVGEREHGARIRDMVMKAAHVGYVEEDEGGXXXXXXXXXXXXQAAWRTPLASVDSLSRQLKDTWETFNANFAT 764
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BLAST of mRNA_H-elongata_contig56121.13054.1 vs. uniprot
Match: A0A6H5KXC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.160e-53
Identity = 105/140 (75.00%), Postives = 111/140 (79.29%), Query Frame = 1 
Query:    1 QVRDGLVTVVLPLLLGRRGVLLQVLTRERVELVHDIQIRVTPVAGRRDAPFHARTA------SARRRRAPVGEREHGARIRDMVMKAAHAGYVEEDEAGGDGR--------AWRTPLASVDSLSRQLKDTWENFNANFAS 378
            +VRDG+V+VVLPLLLGRRGVLLQVLTRERVELVHD+QIRVTPVAGRRDAP  AR +      S  R   PVGEREHGARIRDMVMKAAH GYVEEDE G            AWRTPLASVDSLSRQLKDTWE FNANFA+
Sbjct:  786 EVRDGMVSVVLPLLLGRRGVLLQVLTRERVELVHDVQIRVTPVAGRRDAPPSARASLGGGGGSRWRPAPPVGEREHGARIRDMVMKAAHVGYVEEDEGGXXXXXXXXXXQAAWRTPLASVDSLSRQLKDTWETFNANFAT 925
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56121.13054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD17_ECTSI3.520e-5474.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXC9_9PHAE1.160e-5375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56121contigH-elongata_contig56121:2775..3746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930914.3168015-CDS-H-elongata_contig56121:2774..30411622930914.3168015-CDS-H-elongata_contig56121:2774..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56121 2775..3041 -
1691679622.7652633-CDS-H-elongata_contig56121:2774..30411691679622.7652633-CDS-H-elongata_contig56121:2774..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56121 2775..3041 -
1622930914.3364203-CDS-H-elongata_contig56121:3635..37461622930914.3364203-CDS-H-elongata_contig56121:3635..3746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56121 3636..3746 -
1691679622.7745967-CDS-H-elongata_contig56121:3635..37461691679622.7745967-CDS-H-elongata_contig56121:3635..3746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56121 3636..3746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56121.13054.1prot_H-elongata_contig56121.13054.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56121 2775..3746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56121.13054.1

>prot_H-elongata_contig56121.13054.1 ID=prot_H-elongata_contig56121.13054.1|Name=mRNA_H-elongata_contig56121.13054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
QVRDGLVTVVLPLLLGRRGVLLQVLTRERVELVHDIQIRVTPVAGRRDAP
FHARTASARRRRAPVGEREHGARIRDMVMKAAHAGYVEEDEAGGDGRAWR
TPLASVDSLSRQLKDTWENFNANFAS
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mRNA from alignment at H-elongata_contig56121:2775..3746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56121.13054.1 ID=mRNA_H-elongata_contig56121.13054.1|Name=mRNA_H-elongata_contig56121.13054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig56121:2775..3746- (Himanthalia elongata Himel1 dioecious)
CAGGTACGCGATGGCTTGGTCACAGTGGTGTTGCCTCTCTTGCTCGGCCG
CAGGGGCGTTCTGCTGCAGGTCCTCACTCGCGAGCGCGTTGAGTTGGTGC
ACGACATCCAGGTCCGTGAATGAAGAGGGAGGGGGAGGAAGACGGAAGAG
AAGGCAGGGCATACTCCTAATAGTAGTGAATGGGAGGGCGGGGGGGGCGA
TTTGGGTCCAAGATGGGTAAAAGATAGTAAAGCTCGCGCTCTTGAGATGA
GTTTTTGTTTTCCGCAGGGGATACAAACCGAGCAAGTTCGTGAAAATAAT
ATCTGTTGTATATACGTGTCTACTGCTGCTTCGTGTGCTCTTAAAAATAT
ACTTAACGTAGTAAATTTATCCAGCGCTATAGGTCACCACGATCTTCATC
GTGTAAAGGGTATAAGAGCCTAACAAATTTGGGATCTAGCTAGGAGGCAG
TTTTTTCTTCTCGAATCCGAGATGCTAGCATGATCAATAGTTGCGCTTAA
AACGATGTGTTCGGAGCTCGCCATCCCTCGCCGAAGGATCTTGCCGTTTC
ATTTGCGGGACAAATGAAACGGCACAGTAAGCTCAACTACACAGTCGGGC
GTATTGTTTGCGGCTGGGAGGTGCAATTGTACTATAAGGAGTGTATTTTG
AAGCGCCTCAGCTCTCGTCTTTCTCTCTCTAATCTACATTGCCTATCTGC
GTCAGATCCGAGTCACGCCGGTGGCCGGGCGCCGCGATGCGCCGTTCCAC
GCGAGGACGGCTTCGGCGCGGAGGAGGCGTGCCCCGGTTGGAGAGAGGGA
GCATGGCGCCCGAATCCGCGACATGGTGATGAAGGCCGCGCACGCCGGCT
ACGTGGAGGAGGACGAGGCGGGGGGTGATGGGAGGGCATGGAGGACCCCG
CTGGCGTCGGTCGACTCGTTGTCGAGGCAGCTGAAGGACACTTGGGAGAA
TTTCAACGCCAACTTTGCGTCA
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Coding sequence (CDS) from alignment at H-elongata_contig56121:2775..3746-

>mRNA_H-elongata_contig56121.13054.1 ID=mRNA_H-elongata_contig56121.13054.1|Name=mRNA_H-elongata_contig56121.13054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig56121:2775..3746- (Himanthalia elongata Himel1 dioecious)
CAGGTACGCGATGGCTTGGTCACAGTGGTGTTGCCTCTCTTGCTCGGCCG
CAGGGGCGTTCTGCTGCAGGTCCTCACTCGCGAGCGCGTTGAGTTGGTGC
ACGACATCCAGCAGGTACGCGATGGCTTGGTCACAGTGGTGTTGCCTCTC
TTGCTCGGCCGCAGGGGCGTTCTGCTGCAGGTCCTCACTCGCGAGCGCGT
TGAGTTGGTGCACGACATCCAGATCCGAGTCACGCCGGTGGCCGGGCGCC
GCGATGCGCCGTTCCACGCGAGGACGGCTTCGGCGCGGAGGAGGCGTGCC
CCGGTTGGAGAGAGGGAGCATGGCGCCCGAATCCGCGACATGGTGATGAA
GGCCGCGCACGCCGGCTACGTGGAGGAGGACGAGGCGGGGGGTGATGGGA
GGGCATGGAGGACCCCGCTGGCGTCGGTCGACTCGTTGTCGAGGCAGCTG
AAGGACACTTGGGAGAATTTCAACGCCAACTTTGCGTCAATCCGAGTCAC
GCCGGTGGCCGGGCGCCGCGATGCGCCGTTCCACGCGAGGACGGCTTCGG
CGCGGAGGAGGCGTGCCCCGGTTGGAGAGAGGGAGCATGGCGCCCGAATC
CGCGACATGGTGATGAAGGCCGCGCACGCCGGCTACGTGGAGGAGGACGA
GGCGGGGGGTGATGGGAGGGCATGGAGGACCCCGCTGGCGTCGGTCGACT
CGTTGTCGAGGCAGCTGAAGGACACTTGGGAGAATTTCAACGCCAACTTT
GCGTCA
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