prot_H-elongata_contig56121.13054.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56121.13054.1
Unique Nameprot_H-elongata_contig56121.13054.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
[Close]
BLAST of mRNA_H-elongata_contig56121.13054.1 vs. uniprot
Match: D8LD17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD17_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.520e-54
Identity = 106/142 (74.65%), Postives = 111/142 (78.17%), Query Frame = 0 
Query:    1 QVRDGLVTVVLPLLLGRRGVLLQVLTRERVELVHDIQIRVTPVAGRRDAPFHARTA------SARRRRAPVGEREHGARIRDMVMKAAHAGYVEEDEAGGDGR----------AWRTPLASVDSLSRQLKDTWENFNANFAS 126
             VRDG+V+VVLPLLLGRRGVLLQVLTRERVELVHD+QIRVTPVAGRRDAP  ART+      S  R   PVGEREHGARIRDMVMKAAH GYVEEDE G              AWRTPLASVDSLSRQLKDTWE FNANFA+
Sbjct:  623 DVRDGMVSVVLPLLLGRRGVLLQVLTRERVELVHDVQIRVTPVAGRRDAPPSARTSLGGGGGSRWRPAPPVGEREHGARIRDMVMKAAHVGYVEEDEGGXXXXXXXXXXXXQAAWRTPLASVDSLSRQLKDTWETFNANFAT 764
[Close]
BLAST of mRNA_H-elongata_contig56121.13054.1 vs. uniprot
Match: A0A6H5KXC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.160e-53
Identity = 105/140 (75.00%), Postives = 111/140 (79.29%), Query Frame = 0 
Query:    1 QVRDGLVTVVLPLLLGRRGVLLQVLTRERVELVHDIQIRVTPVAGRRDAPFHARTA------SARRRRAPVGEREHGARIRDMVMKAAHAGYVEEDEAGGDGR--------AWRTPLASVDSLSRQLKDTWENFNANFAS 126
            +VRDG+V+VVLPLLLGRRGVLLQVLTRERVELVHD+QIRVTPVAGRRDAP  AR +      S  R   PVGEREHGARIRDMVMKAAH GYVEEDE G            AWRTPLASVDSLSRQLKDTWE FNANFA+
Sbjct:  786 EVRDGMVSVVLPLLLGRRGVLLQVLTRERVELVHDVQIRVTPVAGRRDAPPSARASLGGGGGSRWRPAPPVGEREHGARIRDMVMKAAHVGYVEEDEGGXXXXXXXXXXQAAWRTPLASVDSLSRQLKDTWETFNANFAT 925
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56121.13054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD17_ECTSI3.520e-5474.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXC9_9PHAE1.160e-5375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56121contigH-elongata_contig56121:2775..3746 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56121.13054.1mRNA_H-elongata_contig56121.13054.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56121 2775..3746 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56121.13054.1 ID=prot_H-elongata_contig56121.13054.1|Name=mRNA_H-elongata_contig56121.13054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
QVRDGLVTVVLPLLLGRRGVLLQVLTRERVELVHDIQIRVTPVAGRRDAP
FHARTASARRRRAPVGEREHGARIRDMVMKAAHAGYVEEDEAGGDGRAWR
TPLASVDSLSRQLKDTWENFNANFAS
back to top