mRNA_H-elongata_contig56094.13047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56094.13047.1
Unique NamemRNA_H-elongata_contig56094.13047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 1.430e-93
Identity = 192/357 (53.78%), Postives = 229/357 (64.15%), Query Frame = 1 
Query:  157 GLSTFIDLCTLQATTLDMKKPLLIKVHRKVRLGEASSDTVVT--KRAASSLQAVTTSTRRML*DAILKRLFNKRYDEAVFAVPEPSYVFEMAA*MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSHKRKRPAGLFVTPSTSKQQDDEQAQRVADSGLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVVFDANIYDEYAAEA 1221
            GLSTF  L  L+A TLD+ KPL + V RKV   + +     T  +R A SLQ VTT+TR ML  A+ KR F+KRYD  V AVP   YVFEMAA MSP LH L WL   CSS EEA RV K I+ KVVDLMV +AEGAG    +  E D + +S     P      P T      E+ +R+  SG+FG        S + GP +LT++EVCQQE DRF  R   T   DY + VLL FWAG G+ALY N+AR ARVLLSVPAS+AVLERDFS  GR ITG+RSR +  YVEM LFLNGN++YIPM VP LS+SQ +EAVPRRL+NP  E + LS G  +VVP    D N  DE+A E+
Sbjct:  483 GLSTFAALVMLRADTLDVTKPLEVTVPRKVTTTDWARTLATTTIERPADSLQDVTTTTRTMLAAALDKRFFSKRYDANVVAVPPSDYVFEMAACMSPALHTLPWLTSMCSSDEEAGRVHKLIKGKVVDLMVKLAEGAGAYPGKATEGDTSGASASAPPPFKRSRGPLTVGTS--ERTKRLLKSGVFGGSKSS--TSRDDGPSELTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEETERLSVG--EVVP----DTNT-DEFAEES 828
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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.060e-25
Identity = 109/342 (31.87%), Postives = 164/342 (47.95%), Query Frame = 1 
Query:  157 GLSTFIDLCTLQATT--LDMKKPLLIKVHRK-----VRLGEASSDTVVTKRAASSLQAVTTSTRRML*DAILKRLFNKRYDEAVFAVPEPSYVFEMAA*MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSHKRKRPAGLFVTPSTS-----KQQDDEQAQRVADSGLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKAL 1146
            G +  + L TL+ +T  +D +  +L  V  +        GE  + +V   R  + L  V    R  L  A+ +R F++ Y  A  +     +VF+M   + P   DL+++ K  S+   A  V K I  K++ L V +AE    + +  PE DE+ +  KR RPA    +  T+      ++DD    + A  GLF     GGG++      + T   + + E +  R     T   D     +L +W   GR LY  LAR ARV+   PASAAVLERDF+     +  SRS    +YVEM LFL+GN D IP  +P L +  ++  +P RL+NP  E+  L
Sbjct:  314 GQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSV--PRLHNHLTQVGRDAREHLASALDRRYFDRCYKSAD-SEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPEQDESVA--KRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLF-KKRRGGGEASQ----QPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGL 644
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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.310e-16
Identity = 66/168 (39.29%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:  700 GLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVVFDANIYD 1203
            GLFG     GGD  N  P   +  +  + E    R     + A       +L +W     A Y  LARVARV+   PASAAVLERDFS  GR +T SRS    +YVEM +FL+GN D IP  +  L+E+  +  +P RL NP   ++ L  GV    PV + D    D
Sbjct:  563 GLFGP----GGDEQNEEPP--SFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLD-GV--FAPVDLTDEEASD 720
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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.160e-15
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  883 LYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSR-SRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNP 1125
            +Y  LARVARV+   PASAAVLERDFS  GR +T SR +  +  YVEM LFL+GN D IP  +  L+E+  +  +P RL NP
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANP 86
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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.050e-7
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:  859 FWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRA--EVKALSTGVEDVVPVVVFD 1188
            +W   G+     L  VA+ +  VPASA V+ERDFS    ++   R+     Y+EM L+L  + D IPM +P L ++ +  A+P R  +P+A  EV+ L    E+   V VFD
Sbjct:  530 YWRLHGKKHPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIPKLDDASVAAAIPDRFRDPQAVEEVRVLDF-TEEEKEVGVFD 640
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.430e-9353.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.060e-2531.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE7.310e-1639.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE5.160e-1553.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JP19_9PHAE1.050e-736.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56094contigH-elongata_contig56094:1312..3255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1296
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56094.13047.1prot_H-elongata_contig56094.13047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56094 2392..3189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.298815-UTR-H-elongata_contig56094:1311..13671622930913.298815-UTR-H-elongata_contig56094:1311..1367Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 1312..1367 +
1691679622.2394311-UTR-H-elongata_contig56094:1311..13671691679622.2394311-UTR-H-elongata_contig56094:1311..1367Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 1312..1367 +
1622930913.319007-UTR-H-elongata_contig56094:1851..19501622930913.319007-UTR-H-elongata_contig56094:1851..1950Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 1852..1950 +
1691679622.2472537-UTR-H-elongata_contig56094:1851..19501691679622.2472537-UTR-H-elongata_contig56094:1851..1950Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 1852..1950 +
1622930913.332786-UTR-H-elongata_contig56094:2114..23911622930913.332786-UTR-H-elongata_contig56094:2114..2391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 2115..2391 +
1691679622.2548218-UTR-H-elongata_contig56094:2114..23911691679622.2548218-UTR-H-elongata_contig56094:2114..2391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 2115..2391 +
1622930913.3688607-UTR-H-elongata_contig56094:3189..32551622930913.3688607-UTR-H-elongata_contig56094:3189..3255Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 3190..3255 +
1691679622.2808938-UTR-H-elongata_contig56094:3189..32551691679622.2808938-UTR-H-elongata_contig56094:3189..3255Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 3190..3255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.3508282-CDS-H-elongata_contig56094:2391..31891622930913.3508282-CDS-H-elongata_contig56094:2391..3189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56094 2392..3189 +
1691679622.2707682-CDS-H-elongata_contig56094:2391..31891691679622.2707682-CDS-H-elongata_contig56094:2391..3189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56094 2392..3189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56094.13047.1

>prot_H-elongata_contig56094.13047.1 ID=prot_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQ
PESDETTSSHKRKRPAGLFVTPSTSKQQDDEQAQRVADSGLFGDDSEGGG
DSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRA
LYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLF
LNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVV
FDANIYDEYAAEATA*
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mRNA from alignment at H-elongata_contig56094:1312..3255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56094.13047.1 ID=mRNA_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1944bp|location=Sequence derived from alignment at H-elongata_contig56094:1312..3255+ (Himanthalia elongata Himel1 dioecious)
TCATCGATGCAGTGAAGAAGTCCGTGGAGCACCTCAACAAGAGCAACGTG
ATGAAGGTGCGTGAAACTAACATGTACAGGTTGACCTTCGTGAAGACTAA
CGTTAACGATAATTTTAACTTGCAGTGCTGCACCGAAAAACCACACTCAC
ATGTCCCAACTTGTTTTTTTTACAAGTGGGGTCCTTGTAGAGTCCTTGCT
GTTTCGAAGTCCAAAAGCTACTGATGCAGTCTGGTATCGTGCCACATGCG
GTTGCGGTGATTGGTTTCAAAAGGTTTGTTTGCGAGAGGTGAAGTTTAGC
CTCGAGAGAGGTTGACGTTTCCAAGTCTCACTTCAACATACTTTGACGTG
CTTTCCTATTTCATGTCTACGTTTTAAGTTTTCCGCGTCCCGCGTTTCTT
TTACATCCCCGCTCAAAAACAAAATTGGAAGAGGAAAGTGTGAGACAGAG
TTGAACTTGTGCGTGTTTGTGGTTCAGGCGCTGATGTTGGTTTGTTCGTT
GCCCACACTCGCCAAAATTTCCCCTATTGACAATCATCAGGTCAAGTACG
AAAACATGCAACACCTCATGTTCGGCAACGCCGCGAAGCTGGTGAACGCC
GCCCCTCACCGCTGGATCTCTACCTGCATGGTCCTGGAGGAAGTGCTTCG
TAGCTGGGAGGTCCTGGAGAAGCACTACCTCGGCAACGAAGCGGGTGGCA
ACTTCCCTCTGGCCGTTCACAAGACGGCCATCGAGGAGCTGTACAGCTTG
ATGAAGCCGGTCGAACTGCTGATCAGGAACTGTCAGCGGGGCGACGGGCC
GACGGGGCTCAGCACTTTCATCGACCTCTGCACGCTGCAGGCTACCACGC
TCGACATGAAGAAGCCGCTGCTCATCAAGGTCCATCGCAAGGTGCGGTTG
GGGGAAGCCAGCTCAGACACGGTTGTAACCAAGCGCGCGGCATCAAGCCT
CCAGGCCGTGACCACCAGCACCCGAAGAATGCTTTGAGACGCCATACTCA
AGCGCCTTTTCAACAAGCGCTACGATGAGGCCGTCTTCGCCGTACCGGAG
CCGAGCTACGTGTTCGAGATGGCAGCGTGAATGAGCCCCTTCCTGCACGA
TCTCAAGTGGCTGCCGAAGTTTTGCAGTAGCCCTGAGGAAGCGGACCGTG
TTGGCAAGTACATCCGGACGAAGGTGGTCGACCTGATGGTGAGCATGGCG
GAGGGGGCGGGAATGCAGGCAGAGGAGCAGCCCGAATCCGACGAGACCAC
GTCTTCCCACAAGCGCAAGCGTCCCGCTGGCTTATTCGTCACGCCCAGCA
CGTCCAAGCAGCAGGACGACGAACAGGCCCAGCGAGTGGCCGACAGTGGC
CTCTTTGGTGACGACTCTGAAGGGGGAGGCGACAGCGACAACACGGGGCC
ATGCAAGCTGACCTTGCGCGAGGTCTGTCAGCAGGAATCCGATCGCTTTC
GGGAACGCTTGAAAAGCACCAAGGCGAAAGACTACCAGGTGTCGGTGCTG
CTTTCGTTCTGGGCCGGGGGGGGACGGGCGCTCTACCTTAACCTGGCGCG
CGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCGTTCTCGAGA
GGGACTTCAGCAAGGACGGGCGCTATATCACAGGGTCCCGTAGCCGGCCG
GCCGGCGAATACGTTGAGATGACGCTGTTTCTCAACGGCAACAAGGATTA
TATCCCCATGGGGGTGCCCTCCCTGTCGGAGAGTCAGATGAAGGAGGCGG
TGCCTCGTCGGCTCACCAATCCTAGGGCAGAGGTGAAGGCCCTCTCTACC
GGCGTGGAGGACGTCGTTCCCGTCGTGGTCTTCGACGCCAACATCTACGA
CGAGTACGCGGCAGAGGCTACCGCCTAGATCTTGAGGCGTCCGCGAAGAG
CAGTGGGGGGATGCACTTCGGATAGGCGTTGTTGATGTTTTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig56094:1312..3255+

>mRNA_H-elongata_contig56094.13047.1 ID=mRNA_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig56094:1312..3255+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCCCTTCCTGCACGATCTCAAGTGGCTGCCGAAGTTTTGCAGTAG
CCCTGAGGAAGCGGACCGTGTTGGCAAGTACATCCGGACGAAGGTGGTCG
ACCTGATGGTGAGCATGGCGGAGGGGGCGGGAATGCAGGCAGAGGAGCAG
CCCGAATCCGACGAGACCACGTCTTCCCACAAGCGCAAGCGTCCCGCTGG
CTTATTCGTCACGCCCAGCACGTCCAAGCAGCAGGACGACGAACAGGCCC
AGCGAGTGGCCGACAGTGGCCTCTTTGGTGACGACTCTGAAGGGGGAGGC
GACAGCGACAACACGGGGCCATGCAAGCTGACCTTGCGCGAGGTCTGTCA
GCAGGAATCCGATCGCTTTCGGGAACGCTTGAAAAGCACCAAGGCGAAAG
ACTACCAGGTGTCGGTGCTGCTTTCGTTCTGGGCCGGGGGGGGACGGGCG
CTCTACCTTAACCTGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGC
ATCTGCTGCCGTTCTCGAGAGGGACTTCAGCAAGGACGGGCGCTATATCA
CAGGGTCCCGTAGCCGGCCGGCCGGCGAATACGTTGAGATGACGCTGTTT
CTCAACGGCAACAAGGATTATATCCCCATGGGGGTGCCCTCCCTGTCGGA
GAGTCAGATGAAGGAGGCGGTGCCTCGTCGGCTCACCAATCCTAGGGCAG
AGGTGAAGGCCCTCTCTACCGGCGTGGAGGACGTCGTTCCCGTCGTGGTC
TTCGACGCCAACATCTACGACGAGTACGCGGCAGAGGCTACCGCCTAGAT
GAGCCCCTTCCTGCACGATCTCAAGTGGCTGCCGAAGTTTTGCAGTAGCC
CTGAGGAAGCGGACCGTGTTGGCAAGTACATCCGGACGAAGGTGGTCGAC
CTGATGGTGAGCATGGCGGAGGGGGCGGGAATGCAGGCAGAGGAGCAGCC
CGAATCCGACGAGACCACGTCTTCCCACAAGCGCAAGCGTCCCGCTGGCT
TATTCGTCACGCCCAGCACGTCCAAGCAGCAGGACGACGAACAGGCCCAG
CGAGTGGCCGACAGTGGCCTCTTTGGTGACGACTCTGAAGGGGGAGGCGA
CAGCGACAACACGGGGCCATGCAAGCTGACCTTGCGCGAGGTCTGTCAGC
AGGAATCCGATCGCTTTCGGGAACGCTTGAAAAGCACCAAGGCGAAAGAC
TACCAGGTGTCGGTGCTGCTTTCGTTCTGGGCCGGGGGGGGACGGGCGCT
CTACCTTAACCTGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCAT
CTGCTGCCGTTCTCGAGAGGGACTTCAGCAAGGACGGGCGCTATATCACA
GGGTCCCGTAGCCGGCCGGCCGGCGAATACGTTGAGATGACGCTGTTTCT
CAACGGCAACAAGGATTATATCCCCATGGGGGTGCCCTCCCTGTCGGAGA
GTCAGATGAAGGAGGCGGTGCCTCGTCGGCTCACCAATCCTAGGGCAGAG
GTGAAGGCCCTCTCTACCGGCGTGGAGGACGTCGTTCCCGTCGTGGTCTT
CGACGCCAACATCTACGACGAGTACGCGGCAGAGGCTACCGCCTAG
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