prot_H-elongata_contig56094.13047.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56094.13047.1
Unique Nameprot_H-elongata_contig56094.13047.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length266
Homology
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 3.390e-68
Identity = 142/263 (53.99%), Postives = 170/263 (64.64%), Query Frame = 0
Query:    1 MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSHKRKRPAGLFVTPSTSKQQDDEQAQRVADSGLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVVFDANIYDEYAAEA 263
            MSP LH L WL   CSS EEA RV K I+ KVVDLMV +AEGAG    +  E D + +S     P      P T      E+ +R+  SG+FG        S + GP +LT++EVCQQE DRF  R   T   DY + VLL FWAG G+ALY N+AR ARVLLSVPAS+AVLERDFS  GR ITG+RSR +  YVEM LFLNGN++YIPM VP LS+SQ +EAVPRRL+NP  E + LS G  +VVP    D N  DE+A E+
Sbjct:  577 MSPALHTLPWLTSMCSSDEEAGRVHKLIKGKVVDLMVKLAEGAGAYPGKATEGDTSGASASAPPPFKRSRGPLTVGTS--ERTKRLLKSGVFGGSKSS--TSRDDGPSELTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEETERLSVG--EVVP----DTNT-DEFAEES 828          
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 9.320e-24
Identity = 85/243 (34.98%), Postives = 122/243 (50.21%), Query Frame = 0
Query:    1 MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSHKRKRPAGLFVTPSTS-----KQQDDEQAQRVADSGLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKAL 238
            + P   DL+++ K  S+   A  V K I  K++ L V +AE    + +  PE DE+ +  KR RPA    +  T+      ++DD    + A  GLF     GGG++      + T   + + E +  R     T   D     +L +W   GR LY  LAR ARV+   PASAAVLERDF+     +  SRS    +YVEM LFL+GN D IP  +P L +  ++  +P RL+NP  E+  L
Sbjct:  410 LHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPEQDESVA--KRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLF-KKRRGGGEASQ----QPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGL 644          
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.260e-17
Identity = 66/168 (39.29%), Postives = 85/168 (50.60%), Query Frame = 0
Query:   90 GLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVVFDANIYD 257
            GLFG     GGD  N  P   +  +  + E    R     + A       +L +W     A Y  LARVARV+   PASAAVLERDFS  GR +T SRS    +YVEM +FL+GN D IP  +  L+E+  +  +P RL NP   ++ L  GV    PV + D    D
Sbjct:  563 GLFGP----GGDEQNEEPP--SFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLD-GV--FAPVDLTDEEASD 720          
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 8.820e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0
Query:  151 LYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSR-SRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNP 231
            +Y  LARVARV+   PASAAVLERDFS  GR +T SR +  +  YVEM LFL+GN D IP  +  L+E+  +  +P RL NP
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANP 86          
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.020e-8
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0
Query:  143 FWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRA--EVKALSTGVEDVVPVVVFD 252
            +W   G+     L  VA+ +  VPASA V+ERDFS    ++   R+     Y+EM L+L  + D IPM +P L ++ +  A+P R  +P+A  EV+ L    E+   V VFD
Sbjct:  530 YWRLHGKKHPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIPKLDDASVAAAIPDRFRDPQAVEEVRVLDF-TEEEKEVGVFD 640          
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A662X2G8_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2G8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.100e-5
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0
Query:  140 LLSFW-AGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMG-VPSLSESQMKEAVPRRL 228
            +L++W        +  L  VARV+ S+PAS+A +ERDF   GR +   RS  A   ++M+ FLN N++Y  +   P LS     E +P  +
Sbjct:  140 VLAYWHRQSDEGTFRLLPLVARVVYSMPASSAQIERDFGMAGRMVVPHRSSLAPYNIDMSTFLNCNREYCDITQCPKLSADTASERIPSNM 230          
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A662Y7F3_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7F3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.350e-5
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0
Query:  127 LKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMG-VPSLSESQMKEAVPRRL 228
            L++ +  +++ SVL  +        +  L  VARV+ S+PAS+A +ERDF   GR +   RS  A   ++M+ FLN N++Y  +   P LS     E +P  +
Sbjct:  214 LRAVRQGEFE-SVLAYWHRQSDEGTFRLLPLVARVVYSMPASSAQIERDFGMAGRMVVPHRSSLAPYNIDMSTFLNCNREYCDITQCPKLSADTASERIPSNM 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.390e-6853.99Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI9.320e-2434.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE5.260e-1739.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE8.820e-1653.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JP19_9PHAE2.020e-836.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A662X2G8_9STRA7.100e-535.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A662Y7F3_9STRA7.350e-533.01Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 140..203
e-value: 1.1E-9
score: 38.0
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 108..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56094contigH-elongata_contig56094:2392..3189 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56094.13047.1mRNA_H-elongata_contig56094.13047.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56094 1312..3255 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56094.13047.1 ID=prot_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQ
PESDETTSSHKRKRPAGLFVTPSTSKQQDDEQAQRVADSGLFGDDSEGGG
DSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRA
LYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLF
LNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVV
FDANIYDEYAAEATA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf