mRNA_H-elongata_contig56094.13047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig56094.13047.1
Unique Name	mRNA_H-elongata_contig56094.13047.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 1.430e-93
Identity = 192/357 (53.78%), Postives = 229/357 (64.15%), Query Frame = 1

Query:  157 GLSTFIDLCTLQATTLDMKKPLLIKVHRKVRLGEASSDTVVT--KRAASSLQAVTTSTRRML*DAILKRLFNKRYDEAVFAVPEPSYVFEMAA*MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSHKRKRPAGLFVTPSTSKQQDDEQAQRVADSGLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVVFDANIYDEYAAEA 1221
            GLSTF  L  L+A TLD+ KPL + V RKV   + +     T  +R A SLQ VTT+TR ML  A+ KR F+KRYD  V AVP   YVFEMAA MSP LH L WL   CSS EEA RV K I+ KVVDLMV +AEGAG    +  E D + +S     P      P T      E+ +R+  SG+FG        S + GP +LT++EVCQQE DRF  R   T   DY + VLL FWAG G+ALY N+AR ARVLLSVPAS+AVLERDFS  GR ITG+RSR +  YVEM LFLNGN++YIPM VP LS+SQ +EAVPRRL+NP  E + LS G  +VVP    D N  DE+A E+
Sbjct:  483 GLSTFAALVMLRADTLDVTKPLEVTVPRKVTTTDWARTLATTTIERPADSLQDVTTTTRTMLAAALDKRFFSKRYDANVVAVPPSDYVFEMAACMSPALHTLPWLTSMCSSDEEAGRVHKLIKGKVVDLMVKLAEGAGAYPGKATEGDTSGASASAPPPFKRSRGPLTVGTS--ERTKRLLKSGVFGGSKSS--TSRDDGPSELTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEETERLSVG--EVVP----DTNT-DEFAEES 828

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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.060e-25
Identity = 109/342 (31.87%), Postives = 164/342 (47.95%), Query Frame = 1

Query:  157 GLSTFIDLCTLQATT--LDMKKPLLIKVHRK-----VRLGEASSDTVVTKRAASSLQAVTTSTRRML*DAILKRLFNKRYDEAVFAVPEPSYVFEMAA*MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSHKRKRPAGLFVTPSTS-----KQQDDEQAQRVADSGLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKAL 1146
            G +  + L TL+ +T  +D +  +L  V  +        GE  + +V   R  + L  V    R  L  A+ +R F++ Y  A  +     +VF+M   + P   DL+++ K  S+   A  V K I  K++ L V +AE    + +  PE DE+ +  KR RPA    +  T+      ++DD    + A  GLF     GGG++      + T   + + E +  R     T   D     +L +W   GR LY  LAR ARV+   PASAAVLERDF+     +  SRS    +YVEM LFL+GN D IP  +P L +  ++  +P RL+NP  E+  L
Sbjct:  314 GQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSV--PRLHNHLTQVGRDAREHLASALDRRYFDRCYKSAD-SEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPEQDESVA--KRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLF-KKRRGGGEASQ----QPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGL 644

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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.310e-16
Identity = 66/168 (39.29%), Postives = 85/168 (50.60%), Query Frame = 1

Query:  700 GLFGDDSEGGGDSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVVFDANIYD 1203
            GLFG     GGD  N  P   +  +  + E    R     + A       +L +W     A Y  LARVARV+   PASAAVLERDFS  GR +T SRS    +YVEM +FL+GN D IP  +  L+E+  +  +P RL NP   ++ L  GV    PV + D    D
Sbjct:  563 GLFGP----GGDEQNEEPP--SFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLD-GV--FAPVDLTDEEASD 720

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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.160e-15
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1

Query:  883 LYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSR-SRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNP 1125
            +Y  LARVARV+   PASAAVLERDFS  GR +T SR +  +  YVEM LFL+GN D IP  +  L+E+  +  +P RL NP
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANP 86

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BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.050e-7
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 1

Query:  859 FWAGGGRALYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLFLNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRA--EVKALSTGVEDVVPVVVFD 1188
            +W   G+     L  VA+ +  VPASA V+ERDFS    ++   R+     Y+EM L+L  + D IPM +P L ++ +  A+P R  +P+A  EV+ L    E+   V VFD
Sbjct:  530 YWRLHGKKHPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIPKLDDASVAAAIPDRFRDPQAVEEVRVLDF-TEEEKEVGVFD 640

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot

BLAST of mRNA_H-elongata_contig56094.13047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A6H5KVU5_9PHAE	1.430e-93	53.78	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
D8LBK4_ECTSI	1.060e-25	31.87	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JZ82_9PHAE	7.310e-16	39.29	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KCJ3_9PHAE	5.160e-15	53.66	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JP19_9PHAE	1.050e-7	36.61	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig56094	contig	H-elongata_contig56094:1312..3255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1296
Cds size	798
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig56094.13047.1	prot_H-elongata_contig56094.13047.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig56094 2392..3189 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930913.298815-UTR-H-elongata_contig56094:1311..1367	1622930913.298815-UTR-H-elongata_contig56094:1311..1367	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 1312..1367 +
1691679622.2394311-UTR-H-elongata_contig56094:1311..1367	1691679622.2394311-UTR-H-elongata_contig56094:1311..1367	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 1312..1367 +
1622930913.319007-UTR-H-elongata_contig56094:1851..1950	1622930913.319007-UTR-H-elongata_contig56094:1851..1950	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 1852..1950 +
1691679622.2472537-UTR-H-elongata_contig56094:1851..1950	1691679622.2472537-UTR-H-elongata_contig56094:1851..1950	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 1852..1950 +
1622930913.332786-UTR-H-elongata_contig56094:2114..2391	1622930913.332786-UTR-H-elongata_contig56094:2114..2391	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 2115..2391 +
1691679622.2548218-UTR-H-elongata_contig56094:2114..2391	1691679622.2548218-UTR-H-elongata_contig56094:2114..2391	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 2115..2391 +
1622930913.3688607-UTR-H-elongata_contig56094:3189..3255	1622930913.3688607-UTR-H-elongata_contig56094:3189..3255	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 3190..3255 +
1691679622.2808938-UTR-H-elongata_contig56094:3189..3255	1691679622.2808938-UTR-H-elongata_contig56094:3189..3255	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig56094 3190..3255 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930913.3508282-CDS-H-elongata_contig56094:2391..3189	1622930913.3508282-CDS-H-elongata_contig56094:2391..3189	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig56094 2392..3189 +
1691679622.2707682-CDS-H-elongata_contig56094:2391..3189	1691679622.2707682-CDS-H-elongata_contig56094:2391..3189	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig56094 2392..3189 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig56094:1312..3255+
coding sequence from alignment at H-elongata_contig56094:1312..3255+

protein sequence of mRNA_H-elongata_contig56094.13047.1

>prot_H-elongata_contig56094.13047.1 ID=prot_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MSPFLHDLKWLPKFCSSPEEADRVGKYIRTKVVDLMVSMAEGAGMQAEEQ
PESDETTSSHKRKRPAGLFVTPSTSKQQDDEQAQRVADSGLFGDDSEGGG
DSDNTGPCKLTLREVCQQESDRFRERLKSTKAKDYQVSVLLSFWAGGGRA
LYLNLARVARVLLSVPASAAVLERDFSKDGRYITGSRSRPAGEYVEMTLF
LNGNKDYIPMGVPSLSESQMKEAVPRRLTNPRAEVKALSTGVEDVVPVVV
FDANIYDEYAAEATA*

mRNA from alignment at H-elongata_contig56094:1312..3255+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig56094.13047.1 ID=mRNA_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1944bp|location=Sequence derived from alignment at H-elongata_contig56094:1312..3255+ (Himanthalia elongata Himel1 dioecious)
TCATCGATGCAGTGAAGAAGTCCGTGGAGCACCTCAACAAGAGCAACGTG
ATGAAGGTGCGTGAAACTAACATGTACAGGTTGACCTTCGTGAAGACTAA
CGTTAACGATAATTTTAACTTGCAGTGCTGCACCGAAAAACCACACTCAC
ATGTCCCAACTTGTTTTTTTTACAAGTGGGGTCCTTGTAGAGTCCTTGCT
GTTTCGAAGTCCAAAAGCTACTGATGCAGTCTGGTATCGTGCCACATGCG
GTTGCGGTGATTGGTTTCAAAAGGTTTGTTTGCGAGAGGTGAAGTTTAGC
CTCGAGAGAGGTTGACGTTTCCAAGTCTCACTTCAACATACTTTGACGTG
CTTTCCTATTTCATGTCTACGTTTTAAGTTTTCCGCGTCCCGCGTTTCTT
TTACATCCCCGCTCAAAAACAAAATTGGAAGAGGAAAGTGTGAGACAGAG
TTGAACTTGTGCGTGTTTGTGGTTCAGGCGCTGATGTTGGTTTGTTCGTT
GCCCACACTCGCCAAAATTTCCCCTATTGACAATCATCAGGTCAAGTACG
AAAACATGCAACACCTCATGTTCGGCAACGCCGCGAAGCTGGTGAACGCC
GCCCCTCACCGCTGGATCTCTACCTGCATGGTCCTGGAGGAAGTGCTTCG
TAGCTGGGAGGTCCTGGAGAAGCACTACCTCGGCAACGAAGCGGGTGGCA
ACTTCCCTCTGGCCGTTCACAAGACGGCCATCGAGGAGCTGTACAGCTTG
ATGAAGCCGGTCGAACTGCTGATCAGGAACTGTCAGCGGGGCGACGGGCC
GACGGGGCTCAGCACTTTCATCGACCTCTGCACGCTGCAGGCTACCACGC
TCGACATGAAGAAGCCGCTGCTCATCAAGGTCCATCGCAAGGTGCGGTTG
GGGGAAGCCAGCTCAGACACGGTTGTAACCAAGCGCGCGGCATCAAGCCT
CCAGGCCGTGACCACCAGCACCCGAAGAATGCTTTGAGACGCCATACTCA
AGCGCCTTTTCAACAAGCGCTACGATGAGGCCGTCTTCGCCGTACCGGAG
CCGAGCTACGTGTTCGAGATGGCAGCGTGAATGAGCCCCTTCCTGCACGA
TCTCAAGTGGCTGCCGAAGTTTTGCAGTAGCCCTGAGGAAGCGGACCGTG
TTGGCAAGTACATCCGGACGAAGGTGGTCGACCTGATGGTGAGCATGGCG
GAGGGGGCGGGAATGCAGGCAGAGGAGCAGCCCGAATCCGACGAGACCAC
GTCTTCCCACAAGCGCAAGCGTCCCGCTGGCTTATTCGTCACGCCCAGCA
CGTCCAAGCAGCAGGACGACGAACAGGCCCAGCGAGTGGCCGACAGTGGC
CTCTTTGGTGACGACTCTGAAGGGGGAGGCGACAGCGACAACACGGGGCC
ATGCAAGCTGACCTTGCGCGAGGTCTGTCAGCAGGAATCCGATCGCTTTC
GGGAACGCTTGAAAAGCACCAAGGCGAAAGACTACCAGGTGTCGGTGCTG
CTTTCGTTCTGGGCCGGGGGGGGACGGGCGCTCTACCTTAACCTGGCGCG
CGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCGTTCTCGAGA
GGGACTTCAGCAAGGACGGGCGCTATATCACAGGGTCCCGTAGCCGGCCG
GCCGGCGAATACGTTGAGATGACGCTGTTTCTCAACGGCAACAAGGATTA
TATCCCCATGGGGGTGCCCTCCCTGTCGGAGAGTCAGATGAAGGAGGCGG
TGCCTCGTCGGCTCACCAATCCTAGGGCAGAGGTGAAGGCCCTCTCTACC
GGCGTGGAGGACGTCGTTCCCGTCGTGGTCTTCGACGCCAACATCTACGA
CGAGTACGCGGCAGAGGCTACCGCCTAGATCTTGAGGCGTCCGCGAAGAG
CAGTGGGGGGATGCACTTCGGATAGGCGTTGTTGATGTTTTCGT

Coding sequence (CDS) from alignment at H-elongata_contig56094:1312..3255+

>mRNA_H-elongata_contig56094.13047.1 ID=mRNA_H-elongata_contig56094.13047.1|Name=mRNA_H-elongata_contig56094.13047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig56094:1312..3255+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCCCTTCCTGCACGATCTCAAGTGGCTGCCGAAGTTTTGCAGTAG
CCCTGAGGAAGCGGACCGTGTTGGCAAGTACATCCGGACGAAGGTGGTCG
ACCTGATGGTGAGCATGGCGGAGGGGGCGGGAATGCAGGCAGAGGAGCAG
CCCGAATCCGACGAGACCACGTCTTCCCACAAGCGCAAGCGTCCCGCTGG
CTTATTCGTCACGCCCAGCACGTCCAAGCAGCAGGACGACGAACAGGCCC
AGCGAGTGGCCGACAGTGGCCTCTTTGGTGACGACTCTGAAGGGGGAGGC
GACAGCGACAACACGGGGCCATGCAAGCTGACCTTGCGCGAGGTCTGTCA
GCAGGAATCCGATCGCTTTCGGGAACGCTTGAAAAGCACCAAGGCGAAAG
ACTACCAGGTGTCGGTGCTGCTTTCGTTCTGGGCCGGGGGGGGACGGGCG
CTCTACCTTAACCTGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGC
ATCTGCTGCCGTTCTCGAGAGGGACTTCAGCAAGGACGGGCGCTATATCA
CAGGGTCCCGTAGCCGGCCGGCCGGCGAATACGTTGAGATGACGCTGTTT
CTCAACGGCAACAAGGATTATATCCCCATGGGGGTGCCCTCCCTGTCGGA
GAGTCAGATGAAGGAGGCGGTGCCTCGTCGGCTCACCAATCCTAGGGCAG
AGGTGAAGGCCCTCTCTACCGGCGTGGAGGACGTCGTTCCCGTCGTGGTC
TTCGACGCCAACATCTACGACGAGTACGCGGCAGAGGCTACCGCCTAGAT
GAGCCCCTTCCTGCACGATCTCAAGTGGCTGCCGAAGTTTTGCAGTAGCC
CTGAGGAAGCGGACCGTGTTGGCAAGTACATCCGGACGAAGGTGGTCGAC
CTGATGGTGAGCATGGCGGAGGGGGCGGGAATGCAGGCAGAGGAGCAGCC
CGAATCCGACGAGACCACGTCTTCCCACAAGCGCAAGCGTCCCGCTGGCT
TATTCGTCACGCCCAGCACGTCCAAGCAGCAGGACGACGAACAGGCCCAG
CGAGTGGCCGACAGTGGCCTCTTTGGTGACGACTCTGAAGGGGGAGGCGA
CAGCGACAACACGGGGCCATGCAAGCTGACCTTGCGCGAGGTCTGTCAGC
AGGAATCCGATCGCTTTCGGGAACGCTTGAAAAGCACCAAGGCGAAAGAC
TACCAGGTGTCGGTGCTGCTTTCGTTCTGGGCCGGGGGGGGACGGGCGCT
CTACCTTAACCTGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCAT
CTGCTGCCGTTCTCGAGAGGGACTTCAGCAAGGACGGGCGCTATATCACA
GGGTCCCGTAGCCGGCCGGCCGGCGAATACGTTGAGATGACGCTGTTTCT
CAACGGCAACAAGGATTATATCCCCATGGGGGTGCCCTCCCTGTCGGAGA
GTCAGATGAAGGAGGCGGTGCCTCGTCGGCTCACCAATCCTAGGGCAGAG
GTGAAGGCCCTCTCTACCGGCGTGGAGGACGTCGTTCCCGTCGTGGTCTT
CGACGCCAACATCTACGACGAGTACGCGGCAGAGGCTACCGCCTAG