mRNA_H-elongata_contig56094.13046.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56094.13046.1
Unique NamemRNA_H-elongata_contig56094.13046.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig56094.13046.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.180e-34
Identity = 61/96 (63.54%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 MVRQYLVEVYKATVLSFSHRLQSAVAGAGGPALHANFDLWTSKTSNEKYLGIRLFWCTTKFVLDPALIAIKLF*PAAELSESTQLSVVLLIWVEEV 288
            M++ ++VE+Y ATV  FS+ ++ A+ GAGG  LHANFDLWTSK SNEKY+G+RLFWCT+ FVLD AL+A+KLF P+A+L+ S QLS +LLIWV+EV
Sbjct:  214 MIKHFVVELYDATVSKFSYSIRKAITGAGGAVLHANFDLWTSKWSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEV 309
[Close]
BLAST of mRNA_H-elongata_contig56094.13046.1 vs. uniprot
Match: A0A0N7L827_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L827_PLAHL)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-10
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   16 LVEVYKATVLSFSHRLQSAVAGAGGPALHANFDLWTSKTSNEKYLGIRLFWCTTKFVLDPALIAIKLF*PAAELSESTQLSVVLLIWVEEV 288
            + +VY AT   F   L+   A    P  H N DLWTSKTS +KY+GIR+ +   ++ +D +++AIK F P +   +S +LS VL  WV +V
Sbjct:   94 IFKVYHATKEGFRTDLRKIKASCPLPIFHLNVDLWTSKTSKDKYVGIRIIFVDAQWRMDISILAIKRFCPGSAKYKSFRLSEVLHSWVIDV 184
[Close]
BLAST of mRNA_H-elongata_contig56094.13046.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.410e-8
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    4 VRQYLVEVYKATVLSFSHRLQSAVAGAGGPALHANFDLWTSKTSNEKYLGIRLFWCTTKFVLDPALIAIKLF*P 225
            +++ +VE+Y AT  +F+  L   V  A  P L+ N DLWTS+ S EKY+G+R+ +     V+   ++ +KLF P
Sbjct:  256 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRP 329
[Close]
BLAST of mRNA_H-elongata_contig56094.13046.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.420e-8
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    4 VRQYLVEVYKATVLSFSHRLQSAVAGAGGPALHANFDLWTSKTSNEKYLGIRLFWCTTKFVLDPALIAIKLF*P 225
            +++ +VE+Y AT  +F+  L   V  A  P L+ N DLWTS+ S EKY+G+R+ +     V+   ++ +KLF P
Sbjct:  177 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRP 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56094.13046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE2.180e-3463.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A0N7L827_PLAHL1.310e-1040.66Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A6H5L6Z1_9PHAE1.410e-837.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE1.420e-837.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56094contigH-elongata_contig56094:2..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56094.13046.1prot_H-elongata_contig56094.13046.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56094 2..666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.220978-CDS-H-elongata_contig56094:1..1521622930913.220978-CDS-H-elongata_contig56094:1..152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56094 2..152 +
1691679622.2129948-CDS-H-elongata_contig56094:1..1521691679622.2129948-CDS-H-elongata_contig56094:1..152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56094 2..152 +
1622930913.236935-CDS-H-elongata_contig56094:595..6661622930913.236935-CDS-H-elongata_contig56094:595..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56094 596..666 +
1691679622.2219944-CDS-H-elongata_contig56094:595..6661691679622.2219944-CDS-H-elongata_contig56094:595..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56094 596..666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.2546208-UTR-H-elongata_contig56094:666..7331622930913.2546208-UTR-H-elongata_contig56094:666..733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 667..733 +
1691679622.230995-UTR-H-elongata_contig56094:666..7331691679622.230995-UTR-H-elongata_contig56094:666..733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56094 667..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56094.13046.1

>prot_H-elongata_contig56094.13046.1 ID=prot_H-elongata_contig56094.13046.1|Name=mRNA_H-elongata_contig56094.13046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MVRQYLVEVYKATVLSFSHRLQSAVAGAGGPALHANFDLWTSKTSNEKYL
GIRLFWCTTKFVLDPALIAIKLF*
back to top

mRNA from alignment at H-elongata_contig56094:2..733+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56094.13046.1 ID=mRNA_H-elongata_contig56094.13046.1|Name=mRNA_H-elongata_contig56094.13046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig56094:2..733+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAGGCAGTATCTCGTCGAGGTCTACAAAGCCACGGTATTGAGCTT
TTCGCACCGGCTGCAGAGTGCTGTCGCTGGAGCAGGGGGCCCTGCACTAC
ACGCCAACTTCGATCTCTGGACTAGCAAGACGTCGAACGAGAAGTATTTA
GGTGAAACTCAATACGGTTGTATGGTGCACTTTGCTCTCTGTTTTATGGT
CGGGCTGAAAAGGTACAGCAACCGTTGGTTGTGCCATTTTATGTATCACA
ACCACCCGAAAGGCGTGCGGACGGACTGGCGCCAGAATAAAAGCATGCGT
CGAAAACACACACCCACGAGATTAATATATTGTCTGATATAATCGAAACT
CTTACCGCAAGGAATCATGGGAAGAACCGAGGGGTCTTCAGGTCCGCTTT
TGTCCTGTCTGCAGGTGCTGTTGCCGCGAGATTATGTTGTGCAGTCTGCT
GCATCGTGAGAGCCAAATTGAGAGCGTGGTACTGTAACTTAAAACTTCGG
TCTTTTAACCAAAAAGCTGCACACGCTCTTTGTCTAAACGTTGCATCCGT
CGTTGCTCCTGTGTGGTGCTTGTAAAACTGTGAAACTTTCTCAGGCATAC
GGCTCTTCTGGTGTACAACGAAGTTCGTCCTCGACCCCGCCCTTATCGCC
ATCAAGCTTTTTTAGCCTGCAGCTGAGCTAAGCGAGAGCACACAACTATC
TGTCGTCCTTCTCATCTGGGTCGAAGAGGTGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig56094:2..733+

>mRNA_H-elongata_contig56094.13046.1 ID=mRNA_H-elongata_contig56094.13046.1|Name=mRNA_H-elongata_contig56094.13046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig56094:2..733+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAGGCAGTATCTCGTCGAGGTCTACAAAGCCACGGTATTGAGCTT
TTCGCACCGGCTGCAGAGTGCTGTCGCTGGAGCAGGGGGCCCTGCACTAC
ACGCCAACTTCGATCTCTGGACTAGCAAGACGTCGAACGAGAAGTATTTA
GATGGTCAGGCAGTATCTCGTCGAGGTCTACAAAGCCACGGTATTGAGCT
TTTCGCACCGGCTGCAGAGTGCTGTCGCTGGAGCAGGGGGCCCTGCACTA
CACGCCAACTTCGATCTCTGGACTAGCAAGACGTCGAACGAGAAGTATTT
AGGCATACGGCTCTTCTGGTGTACAACGAAGTTCGTCCTCGACCCCGCCC
TTATCGCCATCAAGCTTTTTTAGGCATACGGCTCTTCTGGTGTACAACGA
AGTTCGTCCTCGACCCCGCCCTTATCGCCATCAAGCTTTTTTAG
back to top