mRNA_H-elongata_contig56066.13042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56066.13042.1
Unique NamemRNA_H-elongata_contig56066.13042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A183WH30_TRIRE (Complex1_51K domain-containing protein n=2 Tax=Protostomia TaxID=33317 RepID=A0A183WH30_TRIRE)

HSP 1 Score: 99.8 bits (247), Expect = 2.760e-26
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+G+QGKPRLKPPFPA++G+FGCP+TVTNVETVAV+PTI RRGG WFASFGR+
Sbjct:   20 LEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRE 72
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A7S3K1X1_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1X1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.280e-26
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+G+QGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGG WFASFGR+
Sbjct:  213 LEGKQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGSWFASFGRE 265
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: D7FZX3_ECTSI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX3_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 7.170e-26
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+GRQGKPRLKPPFPANVGVFGCP+TVTNVETVAVAPTILRRG  WFASFGRK
Sbjct:  235 LEGRQGKPRLKPPFPANVGVFGCPTTVTNVETVAVAPTILRRGASWFASFGRK 287
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A7S1TYU1_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYU1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 8.400e-26
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+GRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRG  WFA FGRK
Sbjct:  210 LEGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGSSWFAGFGRK 262
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A835ZC73_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC73_9STRA)

HSP 1 Score: 106 bits (265), Expect = 9.500e-26
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+GRQGKPR+KPPFPANVGVFGCP+TVTNVET+AVAPTILRRGG WFA FGRK
Sbjct:  227 LEGRQGKPRMKPPFPANVGVFGCPTTVTNVETIAVAPTILRRGGAWFAGFGRK 279
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A498HNG0_MALDO (Complex1_51K domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HNG0_MALDO)

HSP 1 Score: 99.4 bits (246), Expect = 1.470e-25
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+G+QGKPRLKPPFPAN G++GCP+TVTNVETVAV+PTI+RRG  WFASFGRK
Sbjct:   61 LEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTIIRRGAEWFASFGRK 113
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A0K0DQ33_ANGCA (SLBB domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DQ33_ANGCA)

HSP 1 Score: 100 bits (249), Expect = 1.840e-25
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+G+QGKPRLKPPFPA++G+FGCP+TVTNVETVAVAPTI RRGG WFASFGR+
Sbjct:    9 LEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGEWFASFGRE 61
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A7S2B9D4_9STRA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9D4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.410e-25
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+G+QGKPRLKPPFPANVGVFGCPSTVTNVET+AVAPTI RRG  WFASFGRK
Sbjct:  231 LEGKQGKPRLKPPFPANVGVFGCPSTVTNVETIAVAPTIFRRGANWFASFGRK 283
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A7S2R3Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3Q9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.270e-25
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            L+G+QGKPRLKPPFPANVGVFGCP+TVTNVET+AVAPTI RRG  WFASFGRK
Sbjct:  247 LEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTIFRRGASWFASFGRK 299
[Close]
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Match: A0A2P6NP92_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NP92_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 6.620e-25
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASFGRK 159
            ++G+QGKPRLKPPFPANVG+FGCP+TVTNVETVAVAPTILRRGG WFA FGRK
Sbjct: 1171 IEGKQGKPRLKPPFPANVGLFGCPTTVTNVETVAVAPTILRRGGSWFAGFGRK 1223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56066.13042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A183WH30_TRIRE2.760e-2681.13Complex1_51K domain-containing protein n=2 Tax=Pro... [more]
A0A7S3K1X1_9STRA3.280e-2692.45NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
D7FZX3_ECTSI7.170e-2692.45NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S1TYU1_9STRA8.400e-2692.45NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A835ZC73_9STRA9.500e-2688.68NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A498HNG0_MALDO1.470e-2581.13Complex1_51K domain-containing protein n=1 Tax=Mal... [more]
A0A0K0DQ33_ANGCA1.840e-2583.02SLBB domain-containing protein n=1 Tax=Angiostrong... [more]
A0A7S2B9D4_9STRA3.410e-2588.68NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
A0A7S2R3Q9_9STRA5.270e-2586.79Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2P6NP92_9EUKA6.620e-2586.79Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56066contigH-elongata_contig56066:3520..3678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7FZX3
Preferred nameNdufv1
KEGG rclassRC00061
KEGG koko:K03942
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.FMN binding
EggNOG OGsCOG1894@1,KOG2658@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.8688602-CDS-H-elongata_contig56066:3519..36781622930912.8688602-CDS-H-elongata_contig56066:3519..3678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56066 3520..3678 -
1691679622.107745-CDS-H-elongata_contig56066:3519..36781691679622.107745-CDS-H-elongata_contig56066:3519..3678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56066 3520..3678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56066.13042.1prot_H-elongata_contig56066.13042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56066 3520..3678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56066.13042.1

>prot_H-elongata_contig56066.13042.1 ID=prot_H-elongata_contig56066.13042.1|Name=mRNA_H-elongata_contig56066.13042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
LQGRQGKPRLKPPFPANVGVFGCPSTVTNVETVAVAPTILRRGGGWFASF
GRK
back to top

mRNA from alignment at H-elongata_contig56066:3520..3678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56066.13042.1 ID=mRNA_H-elongata_contig56066.13042.1|Name=mRNA_H-elongata_contig56066.13042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig56066:3520..3678- (Himanthalia elongata Himel1 dioecious)
CTGCAGGGCCGTCAGGGGAAGCCTCGCCTGAAGCCCCCCTTCCCCGCCAA
CGTTGGTGTGTTCGGATGTCCCTCTACCGTGACCAACGTGGAAACTGTAG
CCGTGGCACCCACCATCCTTCGCCGCGGCGGTGGCTGGTTCGCGAGCTTC
GGGCGTAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig56066:3520..3678-

>mRNA_H-elongata_contig56066.13042.1 ID=mRNA_H-elongata_contig56066.13042.1|Name=mRNA_H-elongata_contig56066.13042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig56066:3520..3678- (Himanthalia elongata Himel1 dioecious)
CTGCAGGGCCGTCAGGGGAAGCCTCGCCTGAAGCCCCCCTTCCCCGCCAA
CGTTGGTGTGTTCGGATGTCCCTCTACCGTGACCAACGTGGAAACTGTAG
CCGTGGCACCCACCATCCTTCGCCGCGGCGGTGGCTGGTTCGCGAGCTTC
GGGCGTAAGCTGCAGGGCCGTCAGGGGAAGCCTCGCCTGAAGCCCCCCTT
CCCCGCCAACGTTGGTGTGTTCGGATGTCCCTCTACCGTGACCAACGTGG
AAACTGTAGCCGTGGCACCCACCATCCTTCGCCGCGGCGGTGGCTGGTTC
GCGAGCTTCGGGCGTAAG
back to top