mRNA_H-elongata_contig56064.13041.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56064.13041.1
Unique NamemRNA_H-elongata_contig56064.13041.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: D7FKG3_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.120e-35
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFFGSPGSFAWG--LSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LAR +GYH  F+HC++ RK +YSGVATF+RSESGL+T+AST SL D+ FFGSPGSF     LSP+RL A+DSEGRVLVTDHGHFVLFNVYAP
Sbjct:   73 LARAQGYHGFFNHCKLPRKVSYSGVATFVRSESGLKTLASTTSLGDSAFFGSPGSFVGERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAP 164          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A6H5KUC8_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.970e-35
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFFGSPGSFAWG--LSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LAR +GYH  F HC++ RK +YSGVATF+RSESGL+TVAST S  D+ FFGSPGSF     LSP+RL A+DSEGRVLVTDHGHFVLFNVYAP
Sbjct:   73 LARAQGYHGFFHHCKLPRKVSYSGVATFVRSESGLKTVASTTSFGDSAFFGSPGSFVGERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAP 164          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A061DLJ6_THECC (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=3 Tax=Byttnerioideae TaxID=214909 RepID=A0A061DLJ6_THECC)

HSP 1 Score: 64.7 bits (156), Expect = 3.600e-10
Identity = 47/105 (44.76%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG---------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G         S A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   49 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAAASVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 153          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A4P9X1K4_9FUNG (DNA-(apurinic or apyrimidinic site) endonuclease (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X1K4_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 5.230e-10
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   10 VEGYHCLFSHCRVHRKPAYSGVATFIRSE-SGLRTVASTNSLADAIFFGSPGSFAWGLSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            V GYH  ++ CR  R PAY+GVATF+R   + +      + L      G  G+         L A+D EGRVL+TDH  FVLFNVY P
Sbjct:   58 VPGYHAFYAPCRDGR-PAYAGVATFVRQTLAPIEAEEGFSGLLGGPSLGCYGALLDRFETAELLALDREGRVLITDHQLFVLFNVYFP 144          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A7J9JD87_9ROSI (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9JD87_9ROSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.390e-10
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG---------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G         + A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   13 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAASAVAEGLVEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 117          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A1R3GG35_COCAP (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GG35_COCAP)

HSP 1 Score: 63.5 bits (153), Expect = 9.170e-10
Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG--------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G          A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   49 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEEAEVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 152          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A1U8K261_GOSHI (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=27 Tax=Gossypium TaxID=3633 RepID=A0A1U8K261_GOSHI)

HSP 1 Score: 63.5 bits (153), Expect = 9.200e-10
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG---------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G         + A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   49 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAASAVAEGLVEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 153          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A6P5YNS1_DURZI (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=5 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YNS1_DURZI)

HSP 1 Score: 62.4 bits (150), Expect = 2.340e-9
Identity = 45/101 (44.55%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   10 VEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTVASTNSLA-DAIFFGSPG--------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
             +GY   FS  R   K    YSGVATF R +S   +V     LA +  F G  G        S A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEVALPLAAEEGFTGLLGCSRKDETASVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 152          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A2P6TH31_CHLSO (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TH31_CHLSO)

HSP 1 Score: 62.0 bits (149), Expect = 3.180e-9
Identity = 44/103 (42.72%), Postives = 52/103 (50.49%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVAS---TNSLADAIFFGSPGSFAWGLSP----------ERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LA VEG+   F  C   R   YSG ATF+RS   L   A    T     A   G+  + A G+ P          E L  +D+EGRVLVTDHG FVLFN+Y P
Sbjct:   82 LAVVEGWDSFFC-CDTTRATGYSGTATFVRSGVALPFAAEEGFTGCAPLAAGNGAAAAAAAGVCPHAALVGHFEAEELAEMDAEGRVLVTDHGSFVLFNLYGP 183          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: D8U3Z3_VOLCA (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U3Z3_VOLCA)

HSP 1 Score: 61.6 bits (148), Expect = 4.400e-9
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFFGSPGSF----AWGLSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 270
            LA  +G+   F+  R   K  YSGVATF R +  L   A        +   S G      A G SPE+L+ +D EGRV++TDHG FVL NVY P
Sbjct:   52 LALADGWESFFAFTR--GKVGYSGVATFCRRDRALPLHAEEG-FTGVLHLTSEGLHPRWQAAGCSPEQLRNLDGEGRVVITDHGGFVLVNVYGP 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKG3_ECTSI1.120e-3572.83DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A6H5KUC8_9PHAE2.970e-3572.83DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A061DLJ6_THECC3.600e-1044.76DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A4P9X1K4_9FUNG5.230e-1043.18DNA-(apurinic or apyrimidinic site) endonuclease (... [more]
A0A7J9JD87_9ROSI8.390e-1043.81Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A1R3GG35_COCAP9.170e-1044.23DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A1U8K261_GOSHI9.200e-1043.81DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A6P5YNS1_DURZI2.340e-944.55DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A2P6TH31_CHLSO3.180e-942.72DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
D8U3Z3_VOLCA4.400e-942.55DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56064contigH-elongata_contig56064:3419..3688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D7FKG3
Preferred nameAPEX2
KEGG koko:K02836,ko:K10772
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
GOsGO:0000302,GO:0001650,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0042221,GO:0042578,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901700,GO:1901701,GO:1902544,GO:1902546
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
EC4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.806507-CDS-H-elongata_contig56064:3418..36881622930912.806507-CDS-H-elongata_contig56064:3418..3688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56064 3419..3688 +
1691679622.09432-CDS-H-elongata_contig56064:3418..36881691679622.09432-CDS-H-elongata_contig56064:3418..3688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56064 3419..3688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56064.13041.1prot_H-elongata_contig56064.13041.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56064 3419..3688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56064.13041.1

>prot_H-elongata_contig56064.13041.1 ID=prot_H-elongata_contig56064.13041.1|Name=mRNA_H-elongata_contig56064.13041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFF
GSPGSFAWGLSPERLKAIDSEGRVLVTDHGHFVLFNVYAP
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mRNA from alignment at H-elongata_contig56064:3419..3688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56064.13041.1 ID=mRNA_H-elongata_contig56064.13041.1|Name=mRNA_H-elongata_contig56064.13041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig56064:3419..3688+ (Himanthalia elongata Himel1 dioecious)
CTTGCGCGTGTCGAAGGATACCATTGTCTCTTCAGCCACTGCAGGGTACA CCGCAAGCCTGCCTATTCTGGGGTGGCAACCTTCATCAGATCTGAGTCAG GCTTAAGAACCGTCGCTTCCACTAACTCCCTGGCGGATGCGATCTTTTTC GGCTCTCCTGGGAGCTTCGCGTGGGGACTGAGCCCTGAAAGGCTGAAGGC GATCGATTCGGAGGGGAGGGTGCTTGTAACGGATCATGGGCACTTCGTCC TCTTCAACGTTTACGCTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig56064:3419..3688+

>mRNA_H-elongata_contig56064.13041.1 ID=mRNA_H-elongata_contig56064.13041.1|Name=mRNA_H-elongata_contig56064.13041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig56064:3419..3688+ (Himanthalia elongata Himel1 dioecious)
CTTGCGCGTGTCGAAGGATACCATTGTCTCTTCAGCCACTGCAGGGTACA
CCGCAAGCCTGCCTATTCTGGGGTGGCAACCTTCATCAGATCTGAGTCAG
GCTTAAGAACCGTCGCTTCCACTAACTCCCTGGCGGATGCGATCTTTTTC
GGCTCTCCTGGGAGCTTCGCGTGGGGACTGAGCCCTGAAAGGCTGAAGGC
GATCGATTCGGAGGGGAGGGTGCTTGTAACGGATCATGGGCACTTCGTCC
TCTTCAACGTTTACGCTCCGCTTGCGCGTGTCGAAGGATACCATTGTCTC
TTCAGCCACTGCAGGGTACACCGCAAGCCTGCCTATTCTGGGGTGGCAAC
CTTCATCAGATCTGAGTCAGGCTTAAGAACCGTCGCTTCCACTAACTCCC
TGGCGGATGCGATCTTTTTCGGCTCTCCTGGGAGCTTCGCGTGGGGACTG
AGCCCTGAAAGGCTGAAGGCGATCGATTCGGAGGGGAGGGTGCTTGTAAC
GGATCATGGGCACTTCGTCCTCTTCAACGTTTACGCTCCG
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