prot_H-elongata_contig56064.13041.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56064.13041.1
Unique Nameprot_H-elongata_contig56064.13041.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: D7FKG3_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.120e-35
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFFGSPGSFAWG--LSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LAR +GYH  F+HC++ RK +YSGVATF+RSESGL+T+AST SL D+ FFGSPGSF     LSP+RL A+DSEGRVLVTDHGHFVLFNVYAP
Sbjct:   73 LARAQGYHGFFNHCKLPRKVSYSGVATFVRSESGLKTLASTTSLGDSAFFGSPGSFVGERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAP 164          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A6H5KUC8_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.970e-35
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFFGSPGSFAWG--LSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LAR +GYH  F HC++ RK +YSGVATF+RSESGL+TVAST S  D+ FFGSPGSF     LSP+RL A+DSEGRVLVTDHGHFVLFNVYAP
Sbjct:   73 LARAQGYHGFFHHCKLPRKVSYSGVATFVRSESGLKTVASTTSFGDSAFFGSPGSFVGERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAP 164          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A061DLJ6_THECC (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=3 Tax=Byttnerioideae TaxID=214909 RepID=A0A061DLJ6_THECC)

HSP 1 Score: 64.7 bits (156), Expect = 3.600e-10
Identity = 47/105 (44.76%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG---------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G         S A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   49 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAAASVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 153          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A4P9X1K4_9FUNG (DNA-(apurinic or apyrimidinic site) endonuclease (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X1K4_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 5.230e-10
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 0
Query:    4 VEGYHCLFSHCRVHRKPAYSGVATFIRSE-SGLRTVASTNSLADAIFFGSPGSFAWGLSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            V GYH  ++ CR  R PAY+GVATF+R   + +      + L      G  G+         L A+D EGRVL+TDH  FVLFNVY P
Sbjct:   58 VPGYHAFYAPCRDGR-PAYAGVATFVRQTLAPIEAEEGFSGLLGGPSLGCYGALLDRFETAELLALDREGRVLITDHQLFVLFNVYFP 144          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A7J9JD87_9ROSI (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9JD87_9ROSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.390e-10
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG---------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G         + A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   13 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAASAVAEGLVEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 117          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A1R3GG35_COCAP (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GG35_COCAP)

HSP 1 Score: 63.5 bits (153), Expect = 9.170e-10
Identity = 46/104 (44.23%), Postives = 55/104 (52.88%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG--------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G          A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   49 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEEAEVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 152          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A1U8K261_GOSHI (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=27 Tax=Gossypium TaxID=3633 RepID=A0A1U8K261_GOSHI)

HSP 1 Score: 63.5 bits (153), Expect = 9.200e-10
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTV-ASTNSLADAIFFGSPG---------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LA  +GY   FS  R   K    YSGVATF R +S   +V A+    A+  F G  G         + A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   49 LAIADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGFTGLLGCSRKDEAASAVAEGLVEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 153          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A6P5YNS1_DURZI (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=5 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YNS1_DURZI)

HSP 1 Score: 62.4 bits (150), Expect = 2.340e-9
Identity = 45/101 (44.55%), Postives = 53/101 (52.48%), Query Frame = 0
Query:    4 VEGYHCLFSHCRVHRK--PAYSGVATFIRSESGLRTVASTNSLA-DAIFFGSPG--------SFAWGL---SPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
             +GY   FS  R   K    YSGVATF R +S   +V     LA +  F G  G        S A GL   S E L  +DSEGR ++TDHGHFVLFN+Y P
Sbjct:   52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEVALPLAAEEGFTGLLGCSRKDETASVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNLYGP 152          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: A0A2P6TH31_CHLSO (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TH31_CHLSO)

HSP 1 Score: 62.0 bits (149), Expect = 3.180e-9
Identity = 44/103 (42.72%), Postives = 52/103 (50.49%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVAS---TNSLADAIFFGSPGSFAWGLSP----------ERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LA VEG+   F  C   R   YSG ATF+RS   L   A    T     A   G+  + A G+ P          E L  +D+EGRVLVTDHG FVLFN+Y P
Sbjct:   82 LAVVEGWDSFFC-CDTTRATGYSGTATFVRSGVALPFAAEEGFTGCAPLAAGNGAAAAAAAGVCPHAALVGHFEAEELAEMDAEGRVLVTDHGSFVLFNLYGP 183          
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Match: D8U3Z3_VOLCA (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U3Z3_VOLCA)

HSP 1 Score: 61.6 bits (148), Expect = 4.400e-9
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 0
Query:    1 LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFFGSPGSF----AWGLSPERLKAIDSEGRVLVTDHGHFVLFNVYAP 90
            LA  +G+   F+  R   K  YSGVATF R +  L   A        +   S G      A G SPE+L+ +D EGRV++TDHG FVL NVY P
Sbjct:   52 LALADGWESFFAFTR--GKVGYSGVATFCRRDRALPLHAEEG-FTGVLHLTSEGLHPRWQAAGCSPEQLRNLDGEGRVVITDHGGFVLVNVYGP 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56064.13041.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKG3_ECTSI1.120e-3572.83DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A6H5KUC8_9PHAE2.970e-3572.83DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A061DLJ6_THECC3.600e-1044.76DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A4P9X1K4_9FUNG5.230e-1043.18DNA-(apurinic or apyrimidinic site) endonuclease (... [more]
A0A7J9JD87_9ROSI8.390e-1043.81Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A1R3GG35_COCAP9.170e-1044.23DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A1U8K261_GOSHI9.200e-1043.81DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A6P5YNS1_DURZI2.340e-944.55DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A2P6TH31_CHLSO3.180e-942.72DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
D8U3Z3_VOLCA4.400e-942.55DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 1..90
e-value: 3.2E-13
score: 51.8
NoneNo IPR availablePANTHERPTHR22748:SF4DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2coord: 2..90
IPR004808AP endonuclease 1PANTHERPTHR22748AP ENDONUCLEASEcoord: 2..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56064contigH-elongata_contig56064:3419..3688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56064.13041.1mRNA_H-elongata_contig56064.13041.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56064 3419..3688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56064.13041.1 ID=prot_H-elongata_contig56064.13041.1|Name=mRNA_H-elongata_contig56064.13041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
LARVEGYHCLFSHCRVHRKPAYSGVATFIRSESGLRTVASTNSLADAIFF
GSPGSFAWGLSPERLKAIDSEGRVLVTDHGHFVLFNVYAP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
IPR004808AP_endonuc_1