mRNA_H-elongata_contig55953.13024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55953.13024.1
Unique NamemRNA_H-elongata_contig55953.13024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55953.13024.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.050e-29
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 ADVHRLRVKVWMPALLSPHMPHLVPKGKASPDLHKIPPELRGPLVVHLDDRQTIGDLKKEVIRRIGRYNKHVGVPEGFGRTKLSELSPHGPGLFLCKHLPD 303
            AD+H ++V VW+P LL   MPHLVP   +S +L ++P  LR PLV+HLDDRQT+ DLKKEV++R+G + + +GV +  GR +LSEL+ HGPG++  KHLPD
Sbjct:  848 ADLHGIKVTVWVPKLLQVQMPHLVPLDPSSSNLDQLPEALRSPLVLHLDDRQTVKDLKKEVVKRLGEFCREMGVSD-MGRARLSELTAHGPGMYPSKHLPD 947
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55953.13024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSX8_ECTSI3.050e-2954.46Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55953contigH-elongata_contig55953:852..2788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog2880.D7FSX8
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size406
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55953.13024.1prot_H-elongata_contig55953.13024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55953 852..2788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.6238654-CDS-H-elongata_contig55953:851..9561622930910.6238654-CDS-H-elongata_contig55953:851..956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55953 852..956 +
1691679621.1824615-CDS-H-elongata_contig55953:851..9561691679621.1824615-CDS-H-elongata_contig55953:851..956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55953 852..956 +
1622930910.6387296-CDS-H-elongata_contig55953:1697..18471622930910.6387296-CDS-H-elongata_contig55953:1697..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55953 1698..1847 +
1691679621.1946585-CDS-H-elongata_contig55953:1697..18471691679621.1946585-CDS-H-elongata_contig55953:1697..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55953 1698..1847 +
1622930910.6571822-CDS-H-elongata_contig55953:2638..27881622930910.6571822-CDS-H-elongata_contig55953:2638..2788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55953 2639..2788 +
1691679621.2045617-CDS-H-elongata_contig55953:2638..27881691679621.2045617-CDS-H-elongata_contig55953:2638..2788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55953 2639..2788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55953.13024.1

>prot_H-elongata_contig55953.13024.1 ID=prot_H-elongata_contig55953.13024.1|Name=mRNA_H-elongata_contig55953.13024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
ADVHRLRVKVWMPALLSPHMPHLVPKGKASPDLHKIPPELRGPLVVHLDD
RQTIGDLKKEVIRRIGRYNKHVGVPEGFGRTKLSELSPHGPGLFLCKHLP
DTIPPNKRRSRRKGSCRGNKEHQHQHKGAGMAAVL
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mRNA from alignment at H-elongata_contig55953:852..2788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55953.13024.1 ID=mRNA_H-elongata_contig55953.13024.1|Name=mRNA_H-elongata_contig55953.13024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1937bp|location=Sequence derived from alignment at H-elongata_contig55953:852..2788+ (Himanthalia elongata Himel1 dioecious)
GCGGATGTTCATCGCCTGAGGGTGAAAGTATGGATGCCGGCCCTACTTTC
CCCCCACATGCCCCACTTGGTTCCTAAAGGGAAAGCTTCGCCGGACCTGC
ATAAGGTGGGTTGGGTTTGGTTGGGTTGGGTTCTATTAATAGCAGTCCAG
CCTTAAGATAAAAGCGTTCTGCGAGCCACAATGTTTAGATTCCATTAGCT
CACGAAATCAAATGCACAACTCATGGTGATTTGGCCTCGGAAATCCTAGC
GCACACTCAAACAGATAAATAAACTGACATAAAGATAGGAAGAAGAAATC
ACCTATTTCGCTCAAATCGAGACATTTTCTCCTCGTACAAGGTGGGCGAT
AGCACTAATCCTAACCCTAACCCTAACCCGCTGACAGGCAGCGATATCAT
ACTTGAGATAGTAGACTATGCGACGGTTATTATTGAGATAGTATACAATA
ATTTATCTAGTGAGAGTATATTACGGTTAGAATTTTGATAGTTCTGTATA
GGACTATTTTCCTCTCTTTTTTATCGAATTGTGTATTGTTTTTTTATTCT
TTCTTTATTGACCATTTGGGGGGCGGTAGATGGGTCTTCGATGAATTGTG
TACGCATAGATCATTATTTTAGTTCTTAATCTAGAAAAAGAAAAAGCGTA
CCTAGTGTAATTTTCTTATAGATTCGATATTATATATTATATACTATATA
CATATAAAATAGGTAGACTAGACCAGACTGCAACATTTTGCTCGACCTCC
GTAAACGCGTCGCAAGCGTCATCTCTGTGTTAAGTTTTGGAGGCATTTTT
GAGGCCGCTGCCTATTCCATGTATCCTCCCCCCTACGTTACGGTAGATTC
CACCGGAGCTGCGTGGACCCTTGGTGGTGCACCTGGACGACCGCCAGACA
ATTGGCGACCTGAAAAAGGAAGTCATCCGCCGGATAGGGCGGTATAACAA
GCACGTAGGCGTCCCGGAAGGGTTCGGACGAACCAAATTATCCGAGGTGA
GATGACAAAAGGGGGTATGGAGGGGGTGATGTGCGAATCCTTCTCGTTGT
ATTGCTGCAATGCCTTGTTCATTATAATTGTGCTCAGAGAACTGGCTCGA
TATCTTGCTCAATTAATTGCCCAGTTTTGTATGGGGGTTTCCGCGGCGGC
GGCGGGTTGTATTCTTTATATTGTGATGCCGACTTCACTCTTTATGAAAA
CCTTGGTCCACTAGACAGCGGGAGCTGACACGCCCGCGCTACTGGCTTTT
AACAAACTTGTAGCTCCATACGTAATATTACTTTCACTTTTTCTGTTTTC
TTTTTGTTGTTTTTGGGTATTCCGAAAATCACCGAATCGCCGGTTTCCAC
GGGTCTATCTGATCACGGCACTTGCAGGCATTCACATTCGCATTGGCATT
GGCATTGGCATTCGCAGTCGCCCAATTAAAATCCGTTCTGCCAGTAAGAA
ACCCCCCACCCTTTGTGGTCCAAAAACGACTCGACTACGTTTTGACAACT
TACAATCCGCTTGGCGATATTATATTGTAATGCTTGGGATAACCGATAGG
GTCAGGGTTATCGTTATCGTTATCAATGTCGTTATCGTTATCATTATCAT
TATCGTTATCATTATCGTTATCATTATCGTTATCGTTATCGTTATCATTC
TATTGGGTCTTTTCGAAGTCCTTTCATCGTAGTACAACCAGCAGGACTAT
CATGGCTTTCCTCCAATATACCTGGACACCACTGACCAGACCCCCCTCCC
TCCCCCCTTCCTTACTAATACGCCTCCATATCTTCAGCTTTCTCCTCACG
GCCCTGGACTTTTTTTATGCAAGCACCTGCCGGACACGATCCCTCCAAAT
AAGCGCCGCAGTCGGCGAAAGGGATCATGCAGAGGAAATAAAGAACATCA
GCATCAGCACAAGGGAGCTGGTATGGCAGCGGTACTA
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Coding sequence (CDS) from alignment at H-elongata_contig55953:852..2788+

>mRNA_H-elongata_contig55953.13024.1 ID=mRNA_H-elongata_contig55953.13024.1|Name=mRNA_H-elongata_contig55953.13024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig55953:852..2788+ (Himanthalia elongata Himel1 dioecious)
GCGGATGTTCATCGCCTGAGGGTGAAAGTATGGATGCCGGCCCTACTTTC
CCCCCACATGCCCCACTTGGTTCCTAAAGGGAAAGCTTCGCCGGACCTGC
ATAAGGCGGATGTTCATCGCCTGAGGGTGAAAGTATGGATGCCGGCCCTA
CTTTCCCCCCACATGCCCCACTTGGTTCCTAAAGGGAAAGCTTCGCCGGA
CCTGCATAAGATTCCACCGGAGCTGCGTGGACCCTTGGTGGTGCACCTGG
ACGACCGCCAGACAATTGGCGACCTGAAAAAGGAAGTCATCCGCCGGATA
GGGCGGTATAACAAGCACGTAGGCGTCCCGGAAGGGTTCGGACGAACCAA
ATTATCCGAGATTCCACCGGAGCTGCGTGGACCCTTGGTGGTGCACCTGG
ACGACCGCCAGACAATTGGCGACCTGAAAAAGGAAGTCATCCGCCGGATA
GGGCGGTATAACAAGCACGTAGGCGTCCCGGAAGGGTTCGGACGAACCAA
ATTATCCGAGCTTTCTCCTCACGGCCCTGGACTTTTTTTATGCAAGCACC
TGCCGGACACGATCCCTCCAAATAAGCGCCGCAGTCGGCGAAAGGGATCA
TGCAGAGGAAATAAAGAACATCAGCATCAGCACAAGGGAGCTGGTATGGC
AGCGGTACTACTTTCTCCTCACGGCCCTGGACTTTTTTTATGCAAGCACC
TGCCGGACACGATCCCTCCAAATAAGCGCCGCAGTCGGCGAAAGGGATCA
TGCAGAGGAAATAAAGAACATCAGCATCAGCACAAGGGAGCTGGTATGGC
AGCGGTACTA
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