prot_H-elongata_contig55953.13024.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55953.13024.1
Unique Nameprot_H-elongata_contig55953.13024.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
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BLAST of mRNA_H-elongata_contig55953.13024.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.050e-29
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 0 
Query:    1 ADVHRLRVKVWMPALLSPHMPHLVPKGKASPDLHKIPPELRGPLVVHLDDRQTIGDLKKEVIRRIGRYNKHVGVPEGFGRTKLSELSPHGPGLFLCKHLPD 101
            AD+H ++V VW+P LL   MPHLVP   +S +L ++P  LR PLV+HLDDRQT+ DLKKEV++R+G + + +GV +  GR +LSEL+ HGPG++  KHLPD
Sbjct:  848 ADLHGIKVTVWVPKLLQVQMPHLVPLDPSSSNLDQLPEALRSPLVLHLDDRQTVKDLKKEVVKRLGEFCREMGVSD-MGRARLSELTAHGPGMYPSKHLPD 947
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55953.13024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSX8_ECTSI3.050e-2954.46Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55953contigH-elongata_contig55953:852..2788 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55953.13024.1mRNA_H-elongata_contig55953.13024.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55953 852..2788 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55953.13024.1 ID=prot_H-elongata_contig55953.13024.1|Name=mRNA_H-elongata_contig55953.13024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
ADVHRLRVKVWMPALLSPHMPHLVPKGKASPDLHKIPPELRGPLVVHLDD
RQTIGDLKKEVIRRIGRYNKHVGVPEGFGRTKLSELSPHGPGLFLCKHLP
DTIPPNKRRSRRKGSCRGNKEHQHQHKGAGMAAVL
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