mRNA_H-elongata_contig55927.13021.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: D8LI84_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI84_ECTSI) HSP 1 Score: 251 bits (641), Expect = 2.190e-77 Identity = 122/178 (68.54%), Postives = 147/178 (82.58%), Query Frame = 1
Query: 1 GRGTVVPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPMFTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDHAPIHPLDMEDVRVLEQKQIRAGHASILRVQVSMSGYAFPGKYAP 534
G VVP LR+ITA++R LYHR LKFD IV+SLIY+ERLMKET+GA+RP P+NWKSL++S L+LSSKVWDD+SMWNRDFSE+ P F+L RLNQLEVAVL +LRFNVKVLSSEYAKYYFHLR+MCVRGGLS HAPIHPLDME ++ LE + + + + L +V+ SGYAF K+ P
Sbjct: 414 GEAVVVPPLRDITAFYRDLYHRTCLKFDSIVLSLIYMERLMKETKGAIRPQPWNWKSLIISALVLSSKVWDDNSMWNRDFSEVFPSFSLGRLNQLEVAVLGVLRFNVKVLSSEYAKYYFHLRAMCVRGGLSDSHAPIHPLDMEGIKELEAMSLHSANDAKLLRKVAKSGYAFTDKHGP 591
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A1E7FAH8_9STRA (Cyclin N-terminal domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAH8_9STRA) HSP 1 Score: 167 bits (422), Expect = 6.580e-49 Identity = 83/149 (55.70%), Postives = 112/149 (75.17%), Query Frame = 1
Query: 16 VPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPM---FTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDH-APIHPLDMEDVRVLEQ 450
+PSL E+ +FR ++ +A+++ DCI++SLIYVERL+K T G LRP NW+SL+ ST++LSSKVWDD SMWN DFS+ CP F+L R NQLE+AVL L F VKV +SEYAKYYF LRSM ++ GL+ ++ ++PLD+E R L+Q
Sbjct: 78 IPSLDEVATFFRDVFFKAQMEADCIILSLIYVERLIKVTHGCLRPKTCNWRSLLFSTMILSSKVWDDLSMWNGDFSQSCPSGVNFSLQRTNQLELAVLNTLHFKVKVPASEYAKYYFLLRSMLIKSGLAGENLGSLNPLDVEGARRLQQ 226
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7S2SV86_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV86_9STRA) HSP 1 Score: 171 bits (432), Expect = 6.980e-48 Identity = 75/144 (52.08%), Postives = 116/144 (80.56%), Query Frame = 1
Query: 16 VPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPMFTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDHAPIHPLDMEDVRVLE 447
VPSL+E+ +FR +Y +++++ +CI++SLIY+ER+ K T+G+++ P NWKSL++ST++++SKVWDD SMWN DFS++CP FTL R+N+LE+A+L++L + VKV +S+YAKYYFH+RS CVR GL+ D + PLD+ + L+
Sbjct: 252 VPSLQELVTFFREIYVKSQMEIECIIMSLIYLERVTKVTKGSIQVRPNNWKSLLVSTMIMASKVWDDLSMWNADFSQVCPSFTLRRINELELALLDVLGYIVKVAASDYAKYYFHIRSYCVRLGLTHDLDSLAPLDLTGAKKLQ 395
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7R9ZM94_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM94_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.920e-47 Identity = 82/167 (49.10%), Postives = 118/167 (70.66%), Query Frame = 1
Query: 16 VPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCP---MFTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDH-APIHPLDMEDVRVLEQKQIRAGHASILRVQVSMS 504
+PSL E+ ++R ++ +A+++ DCI++SLIYVERL+K TRG LRP NW+S++ S ++LSSKVWDD SMWN DFS+ CP F L R+N+LE+A+L +L F VKV +SEYAKYYF LRSM ++ GL D ++PLD+ L+Q + S+ +V+V+ S
Sbjct: 35 IPSLEEVGKFYRDIFVKAQMESDCIIMSLIYVERLIKTTRGTLRPRASNWRSMLFSCMVLSSKVWDDLSMWNADFSQSCPPGVSFPLQRINELELAILNVLEFQVKVPASEYAKYYFLLRSMLIKSGLGGDQITTLNPLDVVGALRLQQVSSQYEADSLAKVRVTRS 201
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7S4AWA7_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWA7_9STRA) HSP 1 Score: 167 bits (422), Expect = 5.240e-47 Identity = 85/158 (53.80%), Postives = 114/158 (72.15%), Query Frame = 1
Query: 4 RGTVVPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPM----FTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLS-MDHAPIHPLDMEDVRVLEQKQIR 462
R T +PSL E+ ++R + +A+++ DCI++SLIYVERL+K+T G LRP NW+SL+ S ++LSSKVWDD SMWN DFS+ CP F+L R+NQLE+AVL L+F+VKV +SEYAKYYF LRSM ++ GL D + PLD+E R L+Q R
Sbjct: 190 RKTYIPSLDEVATFYRDTFFKAQMEADCIIMSLIYVERLIKQTIGRLRPRASNWRSLIFSCMILSSKVWDDLSMWNGDFSQSCPPGGVNFSLQRINQLELAVLNSLKFSVKVPASEYAKYYFLLRSMLIKSGLGGEDLGSLDPLDVEGARRLQQVSSR 347
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7S2I4W4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4W4_9STRA) HSP 1 Score: 170 bits (430), Expect = 7.910e-47 Identity = 81/147 (55.10%), Postives = 114/147 (77.55%), Query Frame = 1
Query: 16 VPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPM---FTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDHAPIHPLDMEDVRVLE 447
VPSL +IT ++R ++ R++++ DCI++SLIYVERL+K+T G +RP P NW+S++ S +++SSKVWDD SMWN DFS+ CP F+L R+N+LE+AVL L++NVKV +SEYAKYYF LRSM +R GL+ + PL+ME V+ LE
Sbjct: 341 VPSLDDITNFYRDVFRRSQMEADCIIMSLIYVERLIKDTNGGVRPKPSNWRSILFSCMVMSSKVWDDLSMWNADFSQTCPRDVSFSLQRINELELAVLGCLKYNVKVTASEYAKYYFLLRSMLIRSGLAGEDMTNTPLNMEGVKKLE 487
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7S3DPP7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPP7_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.900e-46 Identity = 82/160 (51.25%), Postives = 116/160 (72.50%), Query Frame = 1
Query: 19 PSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPM---FTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLS-MDHAPIHPLDMEDVRVLEQKQIRAGHASILR 486
PSL +IT ++R ++ RA+++ DC+++SLIYVERL+K TRG LRP NW+S++ S ++L+SKVWDD SMWN DFS+ CP FTL R+N+LE+AVL+ L + VKV +SEYAKYYF LRSM ++ GL D ++PLD++ R L+ + A+ LR
Sbjct: 62 PSLDDITTFYRDVFGRAQMESDCVIMSLIYVERLIKNTRGNLRPRATNWRSVLFSCMVLASKVWDDLSMWNGDFSQTCPAGVTFTLQRINELELAVLDALEYIVKVPASEYAKYYFLLRSMLIKSGLGGEDLNEMNPLDVDGARRLQAVSTKYQRAASLR 221
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7S1BXU3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXU3_9STRA) HSP 1 Score: 167 bits (423), Expect = 4.170e-45 Identity = 79/164 (48.17%), Postives = 117/164 (71.34%), Query Frame = 1
Query: 16 VPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPMFTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDH-APIHPLDMEDVRVLEQKQIRAGHASILRVQVSMS 504
VPSL +T ++R ++ +++++ DCI++SLIY+ERL+KET+G +RP NWKS++ S+++++SKVWDD SMWN DFS+L P FTL R+N LE+A+L L++ VKV +SEYAKYYF LRSM R GL D PLD++ V+ E R G + +++ + S
Sbjct: 510 VPSLEVLTKFYRDVFQKSQMESDCIIISLIYIERLVKETQGVVRPRCSNWKSIIFSSMIMASKVWDDLSMWNADFSQLSPSFTLQRINDLEIAILNALKYCVKVPASEYAKYYFLLRSMLARSGLGSDDLTSASPLDVDSVKKFETMSSRYGKNAAKKIRRAAS 673
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: A0A7S2EB28_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EB28_9STRA) HSP 1 Score: 167 bits (423), Expect = 4.390e-45 Identity = 83/166 (50.00%), Postives = 119/166 (71.69%), Query Frame = 1
Query: 10 TVVPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPM---FTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDHAPIHPLDMEDVRVLEQKQIRAGHASILRVQVS 498
+ VPSL +IT ++R ++ R++++ DCIV+SLIY+ERL+K+T G +RP P NW+S++ S +++SSKVWDD SMWN DFS+ CP F+L R+N+LE+AVL LR++VKV +SEYAKYYF LRSM +R GL+ + PL+ E V+ LE + R +VS
Sbjct: 507 SAVPSLDDITNFYRDVFRRSQMEADCIVMSLIYIERLIKDTNGGVRPRPSNWRSILFSCMVMSSKVWDDLSMWNADFSQTCPRGVSFSLQRINELELAVLGCLRYSVKVTASEYAKYYFLLRSMLIRSGLAGEDMTNTPLNAEGVQKLEHMSANFQINAETRAEVS 672
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Match: B8LDN3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDN3_THAPS) HSP 1 Score: 158 bits (400), Expect = 4.450e-44 Identity = 78/151 (51.66%), Postives = 114/151 (75.50%), Query Frame = 1
Query: 10 TVVPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPLPFNWKSLVMSTLLLSSKVWDDHSMWNRDFSELCPM---FTLVRLNQLEVAVLELLRFNVKVLSSEYAKYYFHLRSMCVRGGLSMDHAP-IHPLDMEDVRVLEQ 450
T VP+L ++TA++R ++ R++++ DCI+++LIY+ERL+K+T GALRP +NW+SL+ S ++LSSKVWDD SMWN DFS++ P F+L R N+LE+A+L L + VKV + EYAKYYF LRSM R GL+ D+ ++PLD + V LE+
Sbjct: 148 TPVPTLEDVTAFYRDIFLRSQMEVDCIIITLIYIERLIKKTEGALRPTYYNWRSLLFSCMVLSSKVWDDLSMWNCDFSKIGPSGVTFSLQRTNELEIALLSALDYKVKVGAGEYAKYYFLLRSMLCRSGLANDNLTMLNPLDAKGVGSLEK 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55927.13021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55927.13021.1 >prot_H-elongata_contig55927.13021.1 ID=prot_H-elongata_contig55927.13021.1|Name=mRNA_H-elongata_contig55927.13021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp GRGTVVPSLREITAYFRHLYHRARLKFDCIVVSLIYVERLMKETRGALRPback to top mRNA from alignment at H-elongata_contig55927:270..2788+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55927.13021.1 ID=mRNA_H-elongata_contig55927.13021.1|Name=mRNA_H-elongata_contig55927.13021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2519bp|location=Sequence derived from alignment at H-elongata_contig55927:270..2788+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55927:270..2788+ >mRNA_H-elongata_contig55927.13021.1 ID=mRNA_H-elongata_contig55927.13021.1|Name=mRNA_H-elongata_contig55927.13021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig55927:270..2788+ (Himanthalia elongata Himel1 dioecious)back to top |