mRNA_H-elongata_contig55763.13009.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438FIW7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FIW7_VITVI) HSP 1 Score: 72.0 bits (175), Expect = 3.250e-12 Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 4 VKRSQYQDVWNDSDYAEFSGVWNSNAFRRLEKRELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
VK+S + W ++ E + ++ + +E LP+ + KW+ K D +GN+++ K+R+AA+G Q ID+ +TF+P+LS S I +A+ D L Q+D+ AF+ ++DE
Sbjct: 697 VKQSSDSEKWIEAMKDEIKSMKDNGVWDLVE---LPESVKPIGCKWIFKTKRDSKGNIVRYKARLAAKGFTQKEGIDYKETFSPVLSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDE 814
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A445JBB1_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445JBB1_GLYSO) HSP 1 Score: 72.0 bits (175), Expect = 3.300e-12 Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 103 ELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
ELPK + KWV K + +G V+K K+R+ ARG Q H +D+ + FAP+ +V + VA A+ + W + QLD+ AF+ L+E
Sbjct: 900 ELPKGKKAIGVKWVYKVKVNPKGEVVKYKARLVARGFLQRHGVDYEEVFAPVARIETVRVVVAHASMQRWKVHQLDVKSAFLNGELEE 987
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A2N9GLZ4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GLZ4_FAGSY) HSP 1 Score: 71.6 bits (174), Expect = 4.490e-12 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 82 FRRLEKR------ELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
F+ L+K+ LP + V KWV KT G++ + K+R+ A+G Q H IDF++TF+P++ +V + +++A +WLLRQLD+ AF+ L E
Sbjct: 923 FQALQKQGTWSLVPLPPSKNVVGCKWVYKLKTHSDGSIARYKARLVAKGFHQQHGIDFTETFSPVIKPPTVRLILSLAVSLNWLLRQLDVKNAFLHGTLKE 1023
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A2P4X4H2_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4H2_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 8.900e-12 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 103 ELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 363
+ P + + KWV K D G + + K+R+ ARG Q + IDF +TFAP+L VS+ + VA+A ++RQ D+P A+++A LD
Sbjct: 18 DTPSDGNLITSKWVFKLKFDNNGELERFKARLVARGFNQKYGIDFGETFAPVLKIVSLRLIVALAALWHAIIRQGDVPNAYLRAMLD 104
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438EVT0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EVT0_VITVI) HSP 1 Score: 70.1 bits (170), Expect = 1.540e-11 Identity = 35/112 (31.25%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 31 WNDSDYAEFSGVWNSNAFRRLEKRELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
W ++ E + +++ ++ ++ LP+ V KWV K + G+V + K+R+ ARG Q + +D+S TF+P+ SV + +++A + W++RQLDI AF+ L+E
Sbjct: 719 WKNAMLEEICALEDNHTWKLVD---LPQGKKVVGCKWVFAVKVNPDGSVARLKARLVARGYAQTYGVDYSYTFSPVAKLNSVQLFISIAASQHWMIRQLDIKNAFLHGDLEE 827
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438EKH6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EKH6_VITVI) HSP 1 Score: 67.8 bits (164), Expect = 1.760e-11 Identity = 33/115 (28.70%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 22 QDVWNDSDYAEFSGVWNSNAFRRLEKRELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
Q+ W + EF + + + + LP + KWV K + G + K K+R+ A+G Q+ DF++TF+P++ + ++ + + +A K+W++RQLDI AF+ L +
Sbjct: 30 QEQWKTTMIDEFVALMRNKIWSLVS---LPNGRKAIGYKWVFKVKENFDGTINKYKARLVAKGFHQVAGFDFNETFSPVVKSTTIRVVLTIALAKNWVVRQLDINNAFLNGDLQK 141
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438G3H4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G3H4_VITVI) HSP 1 Score: 69.7 bits (169), Expect = 1.970e-11 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 79 AFRRLEKREL---PKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 363
A +R + EL P+ + + KWV K G + + K+R+ ARG Q + +D+ +TF+P+ +V + +A+A KDW LRQ+D+ AF+ LD
Sbjct: 377 ALKRNQTWELVPKPRDVEPISCKWVYKIKRRTDGLIERHKARLVARGFSQQYGLDYDETFSPVAKLTTVRVLLALAANKDWDLRQMDVKNAFLHGELD 474
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A5B6WJG1_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6WJG1_9ROSI) HSP 1 Score: 69.3 bits (168), Expect = 2.830e-11 Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 109 PKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 363
P H + KW+ K + G V + K+R+ A+G Q+ DF +TF+PI+ ++ + +++A K WLLRQ+D+ AF+ +LD
Sbjct: 835 PPHRKIIGCKWLFKIKRNPDGTVARRKARLVAKGYSQVPGCDFKETFSPIIKPATIQVILSIAVSKGWLLRQVDVNNAFLNGNLD 919
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438I797_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I797_VITVI) HSP 1 Score: 68.9 bits (167), Expect = 3.850e-11 Identity = 37/121 (30.58%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 4 VKRSQYQDVWNDSDYAEFSGVWNSNAFRRLEKRELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
VK+S + W ++ E + ++ + +E LPK + KW+ K D +GN+++ K+R+ A+G Q ID+ +TF+P+ S S I +A+ D L Q+D+ AF+ ++DE
Sbjct: 531 VKQSSDSEKWIEAMKDEMKSMKDNGVWDLVE---LPKGVKPIGCKWIFKTKRDSKGNIVRYKARLIAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDE 648
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A6A3ADU5_HIBSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ADU5_HIBSY) HSP 1 Score: 68.6 bits (166), Expect = 5.140e-11 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 52 EFSGVWNSNAFRRLEKRELPKHADGVIGKWVKN*KTDERGNVMKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 366
E++ + +N + + LP V KW+ K + G + + KSR+ ARG QI DF TF+P+ + ++N+ +A+A +K W LRQ+DI AF+ +L E
Sbjct: 383 EYNALVKNNTWTPIR---LPGGRFPVGCKWLFRIKRNADGTLQRYKSRLVARGFSQIPGQDFQDTFSPVAKSTTINVILALAVQKRWCLRQVDINNAFLNGYLQE 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55763.13009.1 >prot_H-elongata_contig55763.13009.1 ID=prot_H-elongata_contig55763.13009.1|Name=mRNA_H-elongata_contig55763.13009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp MKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLback to top mRNA from alignment at H-elongata_contig55763:43..408- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55763.13009.1 ID=mRNA_H-elongata_contig55763.13009.1|Name=mRNA_H-elongata_contig55763.13009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig55763:43..408- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55763:43..408- >mRNA_H-elongata_contig55763.13009.1 ID=mRNA_H-elongata_contig55763.13009.1|Name=mRNA_H-elongata_contig55763.13009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig55763:43..408- (Himanthalia elongata Himel1 dioecious)back to top |