prot_H-elongata_contig55763.13009.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55763.13009.1
Unique Nameprot_H-elongata_contig55763.13009.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A6A3ADU5_HIBSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ADU5_HIBSY)

HSP 1 Score: 61.2 bits (147), Expect = 2.050e-9
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 63
            KSR+ ARG  QI   DF  TF+P+  + ++N+ +A+A +K W LRQ+DI  AF+  +L E
Sbjct:  425 KSRLVARGFSQIPGQDFQDTFSPVAKSTTINVILALAVQKRWCLRQVDINNAFLNGYLQE 484          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438FCK8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FCK8_VITVI)

HSP 1 Score: 59.3 bits (142), Expect = 9.630e-9
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 62
            K+R+ ARG  Q + +D+ +TF+P+    +V + +A+A  KDW LRQ+D+  AF+   LD
Sbjct:  304 KARLVARGFSQQYGLDYDETFSPVAKLTTVRVLLALAANKDWDLRQMDVKNAFLHGELD 362          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438G3H4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G3H4_VITVI)

HSP 1 Score: 59.3 bits (142), Expect = 9.710e-9
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 62
            K+R+ ARG  Q + +D+ +TF+P+    +V + +A+A  KDW LRQ+D+  AF+   LD
Sbjct:  416 KARLVARGFSQQYGLDYDETFSPVAKLTTVRVLLALAANKDWDLRQMDVKNAFLHGELD 474          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A5B6WJG1_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6WJG1_9ROSI)

HSP 1 Score: 59.3 bits (142), Expect = 9.820e-9
Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 62
            K+R+ A+G  Q+   DF +TF+PI+   ++ + +++A  K WLLRQ+D+  AF+  +LD
Sbjct:  861 KARLVAKGYSQVPGCDFKETFSPIIKPATIQVILSIAVSKGWLLRQVDVNNAFLNGNLD 919          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A5C788_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C788_VITVI)

HSP 1 Score: 59.3 bits (142), Expect = 9.840e-9
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 62
            K+R+ ARG  Q + +D+ +TF+P+    +V + +A+A  KDW LRQ+D+  AF+   LD
Sbjct:  791 KARLVARGFSQQYGLDYDETFSPVAKLTTVRVLLALAANKDWDLRQMDVKNAFLHGELD 849          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438EVT0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EVT0_VITVI)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-8
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 63
            K+R+ ARG  Q + +D+S TF+P+    SV + +++A  + W++RQLDI  AF+   L+E
Sbjct:  768 KARLVARGYAQTYGVDYSYTFSPVAKLNSVQLFISIAASQHWMIRQLDIKNAFLHGDLEE 827          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A2N9GLZ4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GLZ4_FAGSY)

HSP 1 Score: 58.2 bits (139), Expect = 2.520e-8
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 63
            K+R+ A+G  Q H IDF++TF+P++   +V + +++A   +WLLRQLD+  AF+   L E
Sbjct:  964 KARLVAKGFHQQHGIDFTETFSPVIKPPTVRLILSLAVSLNWLLRQLDVKNAFLHGTLKE 1023          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: UPI001D006927 (uncharacterized protein LOC123046761 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D006927)

HSP 1 Score: 57.8 bits (138), Expect = 3.430e-8
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    2 KPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 63
            K K+R+ ARG  Q H ID+  TF+P++   +V + +++A  + W+LRQ+D+  AF+   L E
Sbjct:   44 KHKARLVARGFTQQHGIDYGDTFSPVVKPTTVRLVLSLAVSRGWILRQIDVSNAFLHGFLAE 105          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A6A2WRB0_HIBSY (Putative Cation/H+ exchanger 4 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WRB0_HIBSY)

HSP 1 Score: 57.8 bits (138), Expect = 3.470e-8
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    4 KSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLD 62
            K+R+ ARG  Q + +D+ +TF+P+    +V + +A+A+ KDW L Q+D+  AF+   LD
Sbjct: 1329 KARLVARGFSQQYGLDYDETFSPVAKLTTVRVLLALADNKDWNLWQMDVKNAFLHGELD 1387          
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Match: A0A438EKH6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EKH6_VITVI)

HSP 1 Score: 56.6 bits (135), Expect = 3.700e-8
Identity = 22/62 (35.48%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    2 KPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQLDIPQAFIQAHLDE 63
            K K+R+ A+G  Q+   DF++TF+P++ + ++ + + +A  K+W++RQLDI  AF+   L +
Sbjct:   80 KYKARLVAKGFHQVAGFDFNETFSPVVKSTTIRVVLTIALAKNWVVRQLDINNAFLNGDLQK 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55763.13009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3ADU5_HIBSY2.050e-945.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FCK8_VITVI9.630e-940.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A438G3H4_VITVI9.710e-940.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B6WJG1_9ROSI9.820e-938.98Retrovirus-related Pol polyprotein from transposon... [more]
A5C788_VITVI9.840e-940.68Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438EVT0_VITVI1.350e-840.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GLZ4_FAGSY2.520e-841.67Integrase catalytic domain-containing protein n=1 ... [more]
UPI001D0069273.430e-838.71uncharacterized protein LOC123046761 n=1 Tax=Triti... [more]
A0A6A2WRB0_HIBSY3.470e-838.98Putative Cation/H+ exchanger 4 n=2 Tax=Hibiscus sy... [more]
A0A438EKH6_VITVI3.700e-835.48Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..63
e-value: 2.7E-12
score: 46.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55763contigH-elongata_contig55763:43..231 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55763.13009.1mRNA_H-elongata_contig55763.13009.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55763 43..408 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55763.13009.1 ID=prot_H-elongata_contig55763.13009.1|Name=mRNA_H-elongata_contig55763.13009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MKPKSRMAARGSGQIHNIDFSKTFAPILSAVSVNIAVAVANEKDWLLRQL
DIPQAFIQAHLDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2