mRNA_H-elongata_contig55687.12994.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55687.12994.1
Unique NamemRNA_H-elongata_contig55687.12994.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.060e-49
Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            DS++CQ+WFD+VF PFVK+ TGKKV LLWDNCPGH IK+DDPQI IIFLPPNVTSV+QPMDMGIL ALKCQYKTEMVA+LA LI+ WD VRARKIRR
Sbjct:  219 DSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRR 315
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.580e-48
Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            DS++CQ+WFD+VF PFVK+ TGKKV LLWDNCPGH IK+DDPQI IIFLPPNVTSV+QPMDMGIL ALKCQYKTEMVA+LA LI+ WD VRARKIRR
Sbjct:  424 DSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRR 520
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.830e-48
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            D++ICQ+WFD+VF PFVK  T KKVALLWDNCPGH IKS+DPQI IIFLPPNV SVYQPM+MGIL  LKCQYKTEMVA+LA LIEDWDTVRARKI+R
Sbjct:  256 DAAICQRWFDEVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLKCQYKTEMVARLADLIEDWDTVRARKIQR 352
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 9.550e-47
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            D++ICQ WFD VF PFVK  T KKVALLWDNCPGH IKS+DPQI IIFLPP +TSVYQPMDMGIL  LKC+YKTEMVA+LA LIEDWDTVRARK +R
Sbjct:   54 DAAICQ-WFDKVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPEITSVYQPMDMGILFVLKCRYKTEMVARLADLIEDWDTVRARKFQR 149
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.870e-46
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:   19 QWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIR 288
            +WFD VF PFVK+ TGKKVALLWDNCPGH IK+DDPQI IIFLPPNV SV+QPMDMGIL ALKCQYKTEMV +LAALIEDWDT RAR+IR
Sbjct:  148 RWFDKVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQIVIIFLPPNVMSVFQPMDMGILFALKCQYKTEMVMRLAALIEDWDTARARQIR 237
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.140e-43
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            D++ICQ+WFD+VF  FVK  T KKVALLWDNCPGH I S+DPQI I+FLPPNV SVYQPMDMGIL  LKCQY+ E +A+LA LIEDWDTVRARKI+R
Sbjct:  392 DAAICQRWFDEVFVAFVKGKTSKKVALLWDNCPGHKINSNDPQIFIMFLPPNVISVYQPMDMGILFVLKCQYRNEKMARLADLIEDWDTVRARKIQR 488
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5KII5_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII5_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 9.780e-42
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKI 285
            D+S+CQ+WFD+VF PF+   T +KVAL+WDNCPGH I ++DPQI IIFLPP VTSV+QPMDMG L  LKC YKTEMV +L+ +IEDWDTVRAR I
Sbjct:  165 DASLCQRWFDEVFVPFINSKTARKVALIWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGGLFTLKCHYKTEMVVRLSGVIEDWDTVRARNI 259
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5K051_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K051_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.390e-41
Identity = 71/97 (73.20%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            D++I Q+WFD+VF PFVK  T  KVALLWD  PGH IKS+DPQI +IFLPPNV SVYQPM MGIL  LK QYKTEMVA+LA LIEDWDTVRAR+++R
Sbjct:  232 DAAIYQRWFDEVFVPFVKGKTSTKVALLWDKGPGHKIKSNDPQIVVIFLPPNVPSVYQPMGMGILLVLKRQYKTEMVARLADLIEDWDTVRARQLQR 328
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5KFG9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.930e-40
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            D+S+CQ+WFD+VF PFVK  T +KV L WDNCPGH I ++DPQI IIFLPP VTSV+QPMDMG L  LKCQ K EMV +L+ +IEDWDTVRAR I R
Sbjct:  209 DASLCQRWFDEVFVPFVKSKTARKVTLTWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGALFTLKCQNKPEMVVRLSDVIEDWDTVRARNIPR 305
[Close]
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Match: A0A6H5KQ75_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ75_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.840e-38
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLPPNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR 291
            DS++CQ+WFD+VF PFVK+ TGKKVALLWDNCPGH IK+DDPQI              PM+MGIL ALKCQYKT+MV +LA LIEDWDT RARKIRR
Sbjct:  370 DSALCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQI--------------PMNMGILFALKCQYKTDMVMRLATLIEDWDTARARKIRR 452
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55687.12994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEY2_9PHAE5.060e-4981.44HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE2.580e-4881.44HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JNS8_9PHAE4.830e-4881.44HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KIE7_9PHAE9.550e-4779.38DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JLK3_9PHAE8.870e-4683.33HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEK6_9PHAE1.140e-4375.26DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII5_9PHAE9.780e-4269.47HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K051_9PHAE3.390e-4173.20HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KFG9_9PHAE2.930e-4069.07HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KQ75_9PHAE7.840e-3869.07HTH CENPB-type domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55687contigH-elongata_contig55687:3272..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score88.6
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog6669.EFX67751
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs3985B@33154,3CCE5@33208,3DTQE@33213,422V0@6656,KOG3105@1,KOG3105@2759
COG Functional cat.BD
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.7345252-CDS-H-elongata_contig55687:3271..35651622930907.7345252-CDS-H-elongata_contig55687:3271..3565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55687 3272..3565 +
1691679619.9466925-CDS-H-elongata_contig55687:3271..35651691679619.9466925-CDS-H-elongata_contig55687:3271..3565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55687 3272..3565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55687.12994.1prot_H-elongata_contig55687.12994.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55687 3272..3565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55687.12994.1

>prot_H-elongata_contig55687.12994.1 ID=prot_H-elongata_contig55687.12994.1|Name=mRNA_H-elongata_contig55687.12994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
DSSICQQWFDDVFTPFVKQATGKKVALLWDNCPGHIIKSDDPQITIIFLP
PNVTSVYQPMDMGILHALKCQYKTEMVAKLAALIEDWDTVRARKIRR*
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mRNA from alignment at H-elongata_contig55687:3272..3565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55687.12994.1 ID=mRNA_H-elongata_contig55687.12994.1|Name=mRNA_H-elongata_contig55687.12994.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig55687:3272..3565+ (Himanthalia elongata Himel1 dioecious)
GATTCGTCCATCTGCCAACAGTGGTTTGACGATGTCTTCACCCCCTTTGT
GAAGCAGGCAACCGGCAAGAAGGTTGCCCTCTTGTGGGACAACTGTCCAG
GCCACATCATCAAGAGCGACGACCCGCAAATCACCATCATCTTCTTGCCT
CCCAACGTGACATCCGTCTACCAGCCCATGGATATGGGTATCCTGCATGC
CCTCAAGTGCCAGTACAAGACCGAGATGGTGGCGAAGCTGGCGGCCCTCA
TCGAGGACTGGGACACGGTCCGAGCACGGAAAATTCGCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig55687:3272..3565+

>mRNA_H-elongata_contig55687.12994.1 ID=mRNA_H-elongata_contig55687.12994.1|Name=mRNA_H-elongata_contig55687.12994.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig55687:3272..3565+ (Himanthalia elongata Himel1 dioecious)
GATTCGTCCATCTGCCAACAGTGGTTTGACGATGTCTTCACCCCCTTTGT
GAAGCAGGCAACCGGCAAGAAGGTTGCCCTCTTGTGGGACAACTGTCCAG
GCCACATCATCAAGAGCGACGACCCGCAAATCACCATCATCTTCTTGCCT
CCCAACGTGACATCCGTCTACCAGCCCATGGATATGGGTATCCTGCATGC
CCTCAAGTGCCAGTACAAGACCGAGATGGTGGCGAAGCTGGCGGCCCTCA
TCGAGGACTGGGACACGGTCCGAGCACGGAAAATTCGCAGGTAAGATTCG
TCCATCTGCCAACAGTGGTTTGACGATGTCTTCACCCCCTTTGTGAAGCA
GGCAACCGGCAAGAAGGTTGCCCTCTTGTGGGACAACTGTCCAGGCCACA
TCATCAAGAGCGACGACCCGCAAATCACCATCATCTTCTTGCCTCCCAAC
GTGACATCCGTCTACCAGCCCATGGATATGGGTATCCTGCATGCCCTCAA
GTGCCAGTACAAGACCGAGATGGTGGCGAAGCTGGCGGCCCTCATCGAGG
ACTGGGACACGGTCCGAGCACGGAAAATTCGCAGGTAA
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