mRNA_H-elongata_contig5560.12984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5560.12984.1
Unique NamemRNA_H-elongata_contig5560.12984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Match: D8LB22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB22_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 7.710e-78
Identity = 277/715 (38.74%), Postives = 353/715 (49.37%), Query Frame = 1 
Query:    4 ANVRDAIRERISLERRVLKECEDRAATLKSEAAVRALKAKRGSRRRGANRHARPASSAVNPGAPLASAGPATDPDIPIDCAAVGSSGDVGRAQADANEAEAIVAGLKRGMALRDEVLASVGAGDLYKGVTKARECLSKLGALQSLLCKACPATVNRGQPPFTVTGDACRGNGNGGSDGEEGGR--RHGGSKAHDXXXXXXXXXXXXXXXXXEGCCSNTRDVCRMASSASDAGGVGGGDGGEKVVGGNNQHTLGAREGSLVGAAEIVRKATIAVRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIARGRAFLSMQNKLLAGLHFDRALELDPDSADAAELKNSFR--LNLDTAEHGGGDSDVGETSPSSSG---ILPNRES--HGRKER-------------------------EWPSAAS------------PCVTEGEEAKMTGEPG-------------DRS--------GASQEDELRHFLATACEEYRAGVVLHQEAFFASSRDKFYRVLSLIDEAEGAAGGPSQAEEREWEPNLGARSLQNPGLMESAG---GCTPNTGC---ASRNPHI------------------ILNKVRIGCHLNIAAAGLLKKTEYESVVHHCSRALAIASCNSSRALERRALVRRAQAHEELGRFRLAVDDLEAAMASLLEEAREAQPRGQSEGPGKALEGEKAEITKRLERARWTKV 1875
            A V +A R  I+ E+ VLK C+DRAA LKSEA V ALKAKRGSRRR A                   A   T+  + +D A       V R  AD  EA AI+ GL+RG+ LRDE++A   AG+ ++G   ARECL +L A Q LL K   A V+ G      TGD   G+   G+ G  GG    HGG     XXXXXXXXX        +GC S++    R  S+A+   GV       +  G  N          +  A E++R+A  A R+AE  CLLR GR AQ+T+ LR+LL E   SV AW+ARG +FL+M   LLAGLHFDRALELD     AA  K + R   +  T+      +D    +P+++G     P + +  HG                             E P+ A             P V   E     G PG             DR+        G S  +++R F+A ACE+YRAGVVLHQE F +SSR +F RVL  +D+A  A  G   A  R+   + G  S       E AG   GC    G    AS    +                  ++  +R+GCHLNIAA+ LL+KT+ ES   HC+RAL +   NS      RALVRRAQAH+ELG FRLAV+DLEAA AS+L   R+   RG+     +AL GE AE+ KRLE ARWTKV
Sbjct:   23 AVVEEAKRVIIAEEQLVLKYCQDRAARLKSEAVVSALKAKRGSRRRSAT---------------TTEATGNTEDGVSLDGAPKNVGALVARTSAD--EAHAILKGLRRGLELRDEIVADAEAGNFHRGTRTARECLVELSAAQKLLGKVV-AVVSPGD-----TGDN-HGSATQGAAGATGGTCCGHGGHDXXXXXXXXXXXXSVDTGHVGQGCASDSGGGVRGKSAAT---GVP-----AQADGRENDEPE-----EIPKALEVLRRAKAACRVAEAACLLRGGRVAQSTEVLRELLFEDSKSVAAWVARGESFLAMNAPLLAGLHFDRALELDKGCVAAATHKQNLRHVSSKGTSAASAACADESHQTPAAAGDTDAAPQKMTIHHGSPTNLSSRVGCGGNVGDQGSLAVAGDVGVETPAPAEDGAIFTTEATEDPAVA-AETPDEEGNPGVAPTAAAXXXXXXDRAAARGVNDDGGSVTEDVRRFVAAACEDYRAGVVLHQEGFLSSSRQRFLRVLEALDKATAAGLGMHAAVARQ---DKGGESAAGQSPSEKAGCGDGCEGLDGKSEEASSGSQVRATSKCGGERGKGGHAVTVVRNMRVGCHLNIAASFLLRKTDLESAAIHCTRALVVEPGNS------RALVRRAQAHQELGYFRLAVEDLEAAEASVLASVRDGHRRGEG---SEALAGELAEVVKRLEHARWTKV 687
[Close]
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Match: A0A835YWL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.590e-5
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:  763 EGSLVGAAEIVRKATIAVRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIARGRAFLSMQNKLLAGLHFDRALELDPDSADAAELKN----SFRLNLDT 1059
            E SL+  A   ++  +A++   G   L+ G  A A +ALRD+LL  P    AW AR +AF      LLA LH +RA+ LDPDSA A   K+    S+RL  D+
Sbjct:  202 EHSLLQLAAAAQRDCLALK---GAAQLQLGHLAAAAEALRDVLLLEPARAAAWTARAQAFRLAGVPLLALLHAERAVRLDPDSAAAVLEKDAADASWRLASDS 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB22_ECTSI7.710e-7838.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWL0_9STRA5.590e-540.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5560contigH-elongata_contig5560:4110..9556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog164328.Phyra74096
EggNOG OGs2A1I5@1,2RY0U@2759,3QD65@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size3771
Cds size1692
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.4590309-UTR-H-elongata_contig5560:4109..58581622930906.4590309-UTR-H-elongata_contig5560:4109..5858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5560 4110..5858 -
1691679619.490378-UTR-H-elongata_contig5560:4109..58581691679619.490378-UTR-H-elongata_contig5560:4109..5858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5560 4110..5858 -
1622930906.5627828-UTR-H-elongata_contig5560:8966..92001622930906.5627828-UTR-H-elongata_contig5560:8966..9200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5560 8967..9200 -
1691679619.5490677-UTR-H-elongata_contig5560:8966..92001691679619.5490677-UTR-H-elongata_contig5560:8966..9200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5560 8967..9200 -
1622930906.5806935-UTR-H-elongata_contig5560:9460..95561622930906.5806935-UTR-H-elongata_contig5560:9460..9556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5560 9461..9556 -
1691679619.5587006-UTR-H-elongata_contig5560:9460..95561691679619.5587006-UTR-H-elongata_contig5560:9460..9556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5560 9461..9556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.482229-CDS-H-elongata_contig5560:5858..62581622930906.482229-CDS-H-elongata_contig5560:5858..6258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 5859..6258 -
1691679619.5056558-CDS-H-elongata_contig5560:5858..62581691679619.5056558-CDS-H-elongata_contig5560:5858..6258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 5859..6258 -
1622930906.5008998-CDS-H-elongata_contig5560:6960..76851622930906.5008998-CDS-H-elongata_contig5560:6960..7685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 6961..7685 -
1691679619.5196946-CDS-H-elongata_contig5560:6960..76851691679619.5196946-CDS-H-elongata_contig5560:6960..7685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 6961..7685 -
1622930906.5290718-CDS-H-elongata_contig5560:8080..85921622930906.5290718-CDS-H-elongata_contig5560:8080..8592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 8081..8592 -
1691679619.5299037-CDS-H-elongata_contig5560:8080..85921691679619.5299037-CDS-H-elongata_contig5560:8080..8592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 8081..8592 -
1622930906.5471098-CDS-H-elongata_contig5560:8911..89661622930906.5471098-CDS-H-elongata_contig5560:8911..8966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 8912..8966 -
1691679619.5394962-CDS-H-elongata_contig5560:8911..89661691679619.5394962-CDS-H-elongata_contig5560:8911..8966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5560 8912..8966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5560.12984.1prot_H-elongata_contig5560.12984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5560 5859..8966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5560.12984.1

>prot_H-elongata_contig5560.12984.1 ID=prot_H-elongata_contig5560.12984.1|Name=mRNA_H-elongata_contig5560.12984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=564bp
MALRDEVLASVGAGDLYKGVTKARECLSKLGALQSLLCKACPATVNRGQP
PFTVTGDACRGNGNGGSDGEEGGRRHGGSKAHDHSHSHPSPRAHAHAHSH
EGCCSNTRDVCRMASSASDAGGVGGGDGGEKVVGGNNQHTLGAREGSLVG
AAEIVRKATIAVRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIAR
GRAFLSMQNKLLAGLHFDRALELDPDSADAAELKNSFRLNLDTAEHGGGD
SDVGETSPSSSGILPNRESHGRKEREWPSAASPCVTEGEEAKMTGEPGDR
SGASQEDELRHFLATACEEYRAGVVLHQEAFFASSRDKFYRVLSLIDEAE
GAAGGPSQAEEREWEPNLGARSLQNPGLMESAGGCTPNTGCASRNPHIIL
NKVRIGCHLNIAAAGLLKKTEYESVVHHCSRALAIASCNSSRALERRALV
RRAQAHEELGRFRLAVDDLEAAMASLLEEAREAQPRGQSEGPGKALEGEK
AEITKRLERARWTKVRRCLGRLRDTPFCFPAPISEAFSFLALYVDCCFLL
LLFVGVGWNVQKI*
back to top

mRNA from alignment at H-elongata_contig5560:4110..9556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5560.12984.1 ID=mRNA_H-elongata_contig5560.12984.1|Name=mRNA_H-elongata_contig5560.12984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5447bp|location=Sequence derived from alignment at H-elongata_contig5560:4110..9556- (Himanthalia elongata Himel1 dioecious)
CAGGCGAATGTTCGCGACGCCATTCGTGAAAGGATATCGCTCGAGCGAAG
AGTCCTCAAGGAGTGTGAAGATCGCGCGGCCACACTGAAATCAGAGGTGC
GGGTTACGCAGGACATGATGATAATGACCTCAACGATTGTCTCGGTCACG
TAGTATGCGGAGAGGAAAACGGCAGCGCCTTCAGTAGTGCCTCGGTTGGT
CCTTATCAAACACGATCGCAAAAACCTCAATTCGAGGGGGCAACTCCCCC
TCGCCATCCGCCCTTGACCCTCGTGTTAGCCGACGCGGCGCTCGCCTACC
GCGCCTCTTAACCTCCGACACCTAACCATCATCTTGGGCAATCCTTTCTC
GTCCAGGCGGCGGTTCGAGCGTTGAAGGCGAAGCGGGGCTCACGACGACG
AGGCGCCAACCGCCACGCCCGACCTGCTTCCTCGGCGGTGAACCCCGGTG
CGCCGCTTGCGAGCGCTGGTCCCGCTACCGACCCAGATATACCAATCGAC
TGCGCTGCGGTCGGCTCGAGCGGGGACGTTGGTCGCGCTCAAGCGGACGC
TAACGAAGCGGAAGCGATCGTCGCGGGACTGAAGAGAGGGATGGCTTTGA
GGGACGAGGTCCTCGCGAGTGTCGGGGCAGGGGACCTGTACAAGGGTGCG
GTTTGAAAAATGCTGTTAACACGCCGAGAAAGATCGGGAAGTGTTGTTGA
CCATATTTTTGATTATTTGTCTTACGGCAACGCAATTCTGCGGGAGGGCA
AGCGAAACGGTTGTTATGTCTTCGTCGCGGGTCTACCCTTATTCCTCTCC
TTTCTCCCCGCTCCATTCGCGGCAGCGAAAATGTCTCAGTCTCTCAAAAT
TGATTGGTCTGTCAATACTTTCAAGCTAGTCAAGCCTTTTTTTTTTATTG
TGGTTAGGGTACCATTTCTGCGTCGGTGACACTTATCCACTCCTCCCTTC
CACCGGGGGACCAGGGGTAACCAAGGCGCGCGAGTGCTTGTCGAAGCTTG
GCGCCTTGCAGAGCCTTCTCTGCAAGGCATGCCCGGCTACGGTCAACAGA
GGTCAACCGCCATTCACCGTAACAGGCGATGCTTGCCGGGGAAACGGAAA
CGGCGGCAGCGACGGCGAGGAGGGAGGGCGGAGACACGGGGGCAGCAAAG
CTCATGACCATAGTCATTCACATCCGAGCCCGCGGGCCCACGCGCATGCG
CATTCACATGAAGGATGTTGCTCTAACACTCGTGACGTATGTCGTATGGC
ATCGAGTGCTTCAGACGCTGGAGGAGTTGGCGGTGGCGATGGCGGAGAGA
AGGTGGTAGGCGGAAACAATCAGCACACTTTGGGAGCGAGAGAGGGTTCT
CTCGTGGGCGCGGCGGAAATCGTGCGGAAGGCAACGATCGCGGTCAGGAT
GGCCGAGGGGACGTGTCTACTTCGGACTGGGCGGGCGGCGCAGGCGACAC
AGGCGTTACGTGATCTGCTGCTGGAGGTTTGTTAAAGAGTGGAGGTGAAA
AAGGGGGGAGGGGGAAAGAGCAGTCCAGCCCTGGGAGGCTTCGCTAAGCG
ACGTAGGAAGCCAAATCAACAGAATGAAAATACATTGCCCGAAACACGAC
TGAGCGAGTCATGATCGTAGGTATGGATGGACGATGTGGCTCAACTGCTG
CACCGTTTGTGTGAAGTGATCAAGCGGTTCTGATAAGCTCTTGAGTGTAT
TTTGTCGAGCGCTCATTGAGCCGTCTTCATCAAATGTACCGGTACCCAAC
AGCATTTTCCGCTTGTGCCTTGGTGTGACAAGAGATCCAAAACACTGATA
CCCCCCTCCCCCCATCCACGCACCCCTGCCCACCCCCATGTACTACACAC
ACGCACCGCGCGATAATGTAGCACCCGACGAGCGTCGAGGCGTGGATAGC
GCGCGGCAGAGCTTTCCTGTCGATGCAAAACAAGCTGCTGGCCGGGCTAC
ACTTCGACCGTGCGCTCGAGCTCGACCCAGACAGCGCTGACGCCGCGGAG
CTCAAAAACAGTTTTCGCTTGAACCTCGACACTGCCGAGCACGGTGGGGG
GGATAGTGACGTGGGCGAAACAAGCCCCTCCTCGTCGGGAATCCTCCCAA
ATCGCGAATCGCACGGTAGGAAGGAGCGCGAATGGCCATCAGCTGCTTCG
CCTTGTGTGACTGAGGGCGAAGAGGCGAAGATGACGGGAGAACCCGGAGA
CAGATCAGGAGCCTCGCAGGAGGATGAGCTCCGACATTTTCTCGCTACCG
CCTGCGAAGAGTACCGCGCGGGCGTGGTTCTCCACCAAGAGGCGTTCTTC
GCTTCGTCGCGGGACAAGTTTTATCGCGTTCTGTCTCTGATCGATGAAGC
CGAAGGGGCTGCAGGAGGACCTTCGCAGGCCGAAGAGCGAGAATGGGAAC
CGAACCTCGGTGCAAGGAGCCTTCAGAATCCAGGTTTGATGGAAAGCGCT
GGCGGCTGCACGCCTAACACGGGGTGTGCCTCGAGAAATCCCCACATCAT
TCTGAACAAGGTTCGCATCGGTTGCCACCTCAATATCGCGGCGGCGGGGT
TGCTGAAGAAGACGGAGTACGAGTCTGTGGTGCATCACTGTTCAAGGTGT
GTTGTTGGCGTTAATAGATTGAACGCCATCCAAACCCACTACCACACACG
GTTGGCAATCCGGTATGTTCGTGGTCTGTTGAACAGAGAAAACCGAGAGA
GTAACAGAAAACCATAATATAATGCAATAAATAAAATGCTCAAGGCATAA
TTAAAACCGTAGACGCTACTGTTGTAAACCTCGACGACGTCGGAAGAGTC
GAAGGTGCAGAGTCATTGCTTGGCACACACGCGGCTGGCCATCGTCGATG
ATTTGCTTTGTTTTGTTTTGCTTTGCTAAGAGGTCGTTCGTTCACGCGAG
CCGAAATGGAAAATATTTGAGGTGCCGCCATGTCTTCCGTCGTGTCACTT
GTGCTGACGTCAGTGCGCGGGTGGAAGGACCGCTCAAATTGATAGGGTTG
CCAAGGTAGATGGTCGAAGAAACGGGAGAGAAATAGCAAACAGCCACGGT
CGTGCATCGTGTAAGTATAAATGAGAGAAGAGACTGCGGATGCGCAGGGC
AAGCGCCACGGTATTCGGTAAGATTGTGTGCGACCGGGAATAATTGTATG
AAATGTTCGTTTGCAAGGAACGCCGGGAGGCGTTCCTCCATTTCCGCTCG
TGCGCCACTCGCGGTGATGCATTGGTCTCTTAATTCCCGCTGCCCTGTCC
CGCCCCGCCTTCATCCCCTCGTCAACAACGTCTCACTCCGTGGTGAAGAG
CCTTGGCGATCGCGTCGTGCAACAGCAGTCGCGCGCTCGAGCGTCGCGCC
CTTGTCCGTCGCGCGCAAGCTCACGAAGAATTGGGCCGATTCCGACTCGC
CGTAGATGATCTGGAGGCAGCAATGGCGTCGCTGCTGGAGGAGGCTCGCG
AGGCTCAGCCCCGAGGACAAAGCGAGGGACCAGGAAAGGCTTTGGAGGGG
GAGAAAGCGGAGATCACCAAGCGCCTGGAGCGTGCGCGGTGGACAAAGGT
CCGACGTTGCCTTGGGCGCTTGCGAGACACCCCATTTTGTTTCCCTGCAC
CGATTAGCGAAGCGTTCTCATTTTTAGCCCTATATGTAGATTGTTGCTTT
TTGCTTCTTCTTTTTGTGGGGGTGGGGTGGAATGTGCAGAAGATTTAATA
TGTTTCACTCGGCGGCGACAATGGTTGAGAGCCATACTGCCTTCGATGCT
GTTAATTTTACACGTGCGCTGTCGTCCGCTATTACTAACCGGGATACATT
GGCGGCACAGACAAAGCTCACCCCGAACGAGACGAGAAGTTTCCACTCTT
GGCGTACCGTAACGTTTGAGGCAGGACAGATATGCGTGTGTGCATGTAAT
TTCAATTTCGAAACGAAGCGTCCACTTCTAACAGCTTATGCAGCTGATGC
AATAACACACACCGCGAAAGGCACGCTACACTTCGATACCCTTGTCCTAA
TATACGATTCAATATGATACGCTGGTAATTTGATACGTTACACTTCGATA
CGCTGGGCCTTTCATGCGATACGCCTTGATACGATACACGGATGATACCA
AACTCGTACATTTCTAGGATATTTTATTAGTAGACGCCTGGGGCCGGGCT
CTGACGCTCAGCCGACCTTGTCCAGTCCGCCATCTGCCCTCCCCCGACAA
AATCGTCGCGCTGTTTTTAATCAATCCACGTGCGCGGGGTTAGATACACG
TGGGAAACGGTAAGGACGAACTGCCGAAAGTTGGGGGGCCTAAAGTGTAG
CGCGCTGGACGCAAATCGACGAAGGCATGCAAAAATTAGGCGTACGTCAT
TGGCAGGCCGGTGGCGAATGGAAACGAGTGGCAGGCCGGCTGATTGAGGG
AGGCGGAAGGGTGGAGCAAGTGCCGCCGAGGTGTACGCGCTCTCGCTGCT
TCCACGCGACGAAGACAAATTGGAGAACACGATGCTATCGATGGCTAAAA
AAATAGTTGGAGAGTGTGGAGCAGAAGTATAGTCGGATCTACACCTCCGG
TGACAGCGCAAGAATTAATTTTTCGTAGGAATCTTCAAAACCTCCTCGAT
TAAGATCTCCCGCAAGTGGAGAGGCAGAATGATGCTAGAATGTCGCGACA
CGGTTCCGGCGTTACTCGTTCAGTTGCTTGTAGAGAGCGCGCGCTCTGCG
CGCGTGGAAGTCTTGGGCGTCATTTCCTGAGGCGTGTGTACGTTGGGTTT
ACGTGTTGGCGCTTTTTTCTCAAACGTGTAACTGACACGGGTCGTAAGAG
CGTTCGCGCCGTGGCAACACCAGGGGTGAAGAACGAACGATCGTGTGTAG
CGAAAAGTTATTCATGAAGTGTGTACCAGGTATATTGTCTTGTACCACAG
TACGCTGAACTGTGTGTAATGTCTTGTCGTCCCCGGCACGCGCTCTGCGT
CAGGCGTCGGTGTATGGTGGATGGGCTGGCTTCAAAGGTGCTGCTTCTGT
TTTCCTAAAAAAACATATGAACATATTCCAACCCTCCGAGCATCCACGCC
TTCTTAGCACCGTGAGAGGTACAGTCCAGGGGACCAACTATCGTCAGGTT
CGAATGTGAACATAACTATCTTTGGTATCAAAGACAAGACTACATGTAGC
CGCGCGCTAGTGCAGGGACGGGATGTTTGTCCTTTTCATGACACTCTGGA
TGGCAAGATCTTGTTTTTTGAGGGAGGACAGGGCGAAAGCGCCTCCAATT
GTACTCCGTGAAGAGCTGTCGAATATTGAGGATGCGACGCGTCTAGCAAT
TTGGGGTGTAATTTGTTTCTGACTTGTTGAGCCAACATGTTTTTTAGGGC
TCGCGCGGTACTGTAGATATGTATTATTGGTGTATTGTTCACATTGACTC
TTGAGCGACTACACGAAGGCGTTACATTACACATAATGACTTAATAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5560:4110..9556-

>mRNA_H-elongata_contig5560.12984.1 ID=mRNA_H-elongata_contig5560.12984.1|Name=mRNA_H-elongata_contig5560.12984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3384bp|location=Sequence derived from alignment at H-elongata_contig5560:4110..9556- (Himanthalia elongata Himel1 dioecious)
ATGGCTTTGAGGGACGAGGTCCTCGCGAGTGTCGGGGCAGGGGACCTGTA
CAAGGATGGCTTTGAGGGACGAGGTCCTCGCGAGTGTCGGGGCAGGGGAC
CTGTACAAGGGGGTAACCAAGGCGCGCGAGTGCTTGTCGAAGCTTGGCGC
CTTGCAGAGCCTTCTCTGCAAGGCATGCCCGGCTACGGTCAACAGAGGTC
AACCGCCATTCACCGTAACAGGCGATGCTTGCCGGGGAAACGGAAACGGC
GGCAGCGACGGCGAGGAGGGAGGGCGGAGACACGGGGGCAGCAAAGCTCA
TGACCATAGTCATTCACATCCGAGCCCGCGGGCCCACGCGCATGCGCATT
CACATGAAGGATGTTGCTCTAACACTCGTGACGTATGTCGTATGGCATCG
AGTGCTTCAGACGCTGGAGGAGTTGGCGGTGGCGATGGCGGAGAGAAGGT
GGTAGGCGGAAACAATCAGCACACTTTGGGAGCGAGAGAGGGTTCTCTCG
TGGGCGCGGCGGAAATCGTGCGGAAGGCAACGATCGCGGTCAGGATGGCC
GAGGGGACGTGTCTACTTCGGACTGGGCGGGCGGCGCAGGCGACACAGGC
GTTACGTGATCTGCTGCTGGAGGGGTAACCAAGGCGCGCGAGTGCTTGTC
GAAGCTTGGCGCCTTGCAGAGCCTTCTCTGCAAGGCATGCCCGGCTACGG
TCAACAGAGGTCAACCGCCATTCACCGTAACAGGCGATGCTTGCCGGGGA
AACGGAAACGGCGGCAGCGACGGCGAGGAGGGAGGGCGGAGACACGGGGG
CAGCAAAGCTCATGACCATAGTCATTCACATCCGAGCCCGCGGGCCCACG
CGCATGCGCATTCACATGAAGGATGTTGCTCTAACACTCGTGACGTATGT
CGTATGGCATCGAGTGCTTCAGACGCTGGAGGAGTTGGCGGTGGCGATGG
CGGAGAGAAGGTGGTAGGCGGAAACAATCAGCACACTTTGGGAGCGAGAG
AGGGTTCTCTCGTGGGCGCGGCGGAAATCGTGCGGAAGGCAACGATCGCG
GTCAGGATGGCCGAGGGGACGTGTCTACTTCGGACTGGGCGGGCGGCGCA
GGCGACACAGGCGTTACGTGATCTGCTGCTGGAGCACCCGACGAGCGTCG
AGGCGTGGATAGCGCGCGGCAGAGCTTTCCTGTCGATGCAAAACAAGCTG
CTGGCCGGGCTACACTTCGACCGTGCGCTCGAGCTCGACCCAGACAGCGC
TGACGCCGCGGAGCTCAAAAACAGTTTTCGCTTGAACCTCGACACTGCCG
AGCACGGTGGGGGGGATAGTGACGTGGGCGAAACAAGCCCCTCCTCGTCG
GGAATCCTCCCAAATCGCGAATCGCACGGTAGGAAGGAGCGCGAATGGCC
ATCAGCTGCTTCGCCTTGTGTGACTGAGGGCGAAGAGGCGAAGATGACGG
GAGAACCCGGAGACAGATCAGGAGCCTCGCAGGAGGATGAGCTCCGACAT
TTTCTCGCTACCGCCTGCGAAGAGTACCGCGCGGGCGTGGTTCTCCACCA
AGAGGCGTTCTTCGCTTCGTCGCGGGACAAGTTTTATCGCGTTCTGTCTC
TGATCGATGAAGCCGAAGGGGCTGCAGGAGGACCTTCGCAGGCCGAAGAG
CGAGAATGGGAACCGAACCTCGGTGCAAGGAGCCTTCAGAATCCAGGTTT
GATGGAAAGCGCTGGCGGCTGCACGCCTAACACGGGGTGTGCCTCGAGAA
ATCCCCACATCATTCTGAACAAGGTTCGCATCGGTTGCCACCTCAATATC
GCGGCGGCGGGGTTGCTGAAGAAGACGGAGTACGAGTCTGTGGTGCATCA
CTGTTCAAGCACCCGACGAGCGTCGAGGCGTGGATAGCGCGCGGCAGAGC
TTTCCTGTCGATGCAAAACAAGCTGCTGGCCGGGCTACACTTCGACCGTG
CGCTCGAGCTCGACCCAGACAGCGCTGACGCCGCGGAGCTCAAAAACAGT
TTTCGCTTGAACCTCGACACTGCCGAGCACGGTGGGGGGGATAGTGACGT
GGGCGAAACAAGCCCCTCCTCGTCGGGAATCCTCCCAAATCGCGAATCGC
ACGGTAGGAAGGAGCGCGAATGGCCATCAGCTGCTTCGCCTTGTGTGACT
GAGGGCGAAGAGGCGAAGATGACGGGAGAACCCGGAGACAGATCAGGAGC
CTCGCAGGAGGATGAGCTCCGACATTTTCTCGCTACCGCCTGCGAAGAGT
ACCGCGCGGGCGTGGTTCTCCACCAAGAGGCGTTCTTCGCTTCGTCGCGG
GACAAGTTTTATCGCGTTCTGTCTCTGATCGATGAAGCCGAAGGGGCTGC
AGGAGGACCTTCGCAGGCCGAAGAGCGAGAATGGGAACCGAACCTCGGTG
CAAGGAGCCTTCAGAATCCAGGTTTGATGGAAAGCGCTGGCGGCTGCACG
CCTAACACGGGGTGTGCCTCGAGAAATCCCCACATCATTCTGAACAAGGT
TCGCATCGGTTGCCACCTCAATATCGCGGCGGCGGGGTTGCTGAAGAAGA
CGGAGTACGAGTCTGTGGTGCATCACTGTTCAAGAGCCTTGGCGATCGCG
TCGTGCAACAGCAGTCGCGCGCTCGAGCGTCGCGCCCTTGTCCGTCGCGC
GCAAGCTCACGAAGAATTGGGCCGATTCCGACTCGCCGTAGATGATCTGG
AGGCAGCAATGGCGTCGCTGCTGGAGGAGGCTCGCGAGGCTCAGCCCCGA
GGACAAAGCGAGGGACCAGGAAAGGCTTTGGAGGGGGAGAAAGCGGAGAT
CACCAAGCGCCTGGAGCGTGCGCGGTGGACAAAGGTCCGACGTTGCCTTG
GGCGCTTGCGAGACACCCCATTTTGTTTCCCTGCACCGATTAGCGAAGCG
TTCTCATTTTTAGCCCTATATGTAGATTGTTGCTTTTTGCTTCTTCTTTT
TGTGGGGGTGGGGTGGAATGTGCAGAAGATTTAAAGCCTTGGCGATCGCG
TCGTGCAACAGCAGTCGCGCGCTCGAGCGTCGCGCCCTTGTCCGTCGCGC
GCAAGCTCACGAAGAATTGGGCCGATTCCGACTCGCCGTAGATGATCTGG
AGGCAGCAATGGCGTCGCTGCTGGAGGAGGCTCGCGAGGCTCAGCCCCGA
GGACAAAGCGAGGGACCAGGAAAGGCTTTGGAGGGGGAGAAAGCGGAGAT
CACCAAGCGCCTGGAGCGTGCGCGGTGGACAAAGGTCCGACGTTGCCTTG
GGCGCTTGCGAGACACCCCATTTTGTTTCCCTGCACCGATTAGCGAAGCG
TTCTCATTTTTAGCCCTATATGTAGATTGTTGCTTTTTGCTTCTTCTTTT
TGTGGGGGTGGGGTGGAATGTGCAGAAGATTTAA
back to top