prot_H-elongata_contig5560.12984.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5560.12984.1
Unique Nameprot_H-elongata_contig5560.12984.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length564
Homology
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Match: D8LB22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB22_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 4.090e-67
Identity = 229/606 (37.79%), Postives = 296/606 (48.84%), Query Frame = 0
Query:    1 MALRDEVLASVGAGDLYKGVTKARECLSKLGALQSLLCKACPATVNRGQPPFTVTGDACRGNGNGGSDGEEGGR--RHGGSKAHDXXXXXXXXXXXXXXXXXEGCCSNTRDVCRMASSASDAGGVGGGDGGEKVVGGNNQHTLGAREGSLVGAAEIVRKATIAVRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIARGRAFLSMQNKLLAGLHFDRALELDPDSADAAELKNSFR--LNLDTAEHGGGDSDVGETSPSSSG---ILPNRES--HGRKER-------------------------EWPSAAS------------PCVTEGEEAKMTGEPG-------------DRS--------GASQEDELRHFLATACEEYRAGVVLHQEAFFASSRDKFYRVLSLIDEAEGAAGGPSQAEEREWEPNLGARSLQNPGLMESAG---GCTPNTGC---ASRNPHI------------------ILNKVRIGCHLNIAAAGLLKKTEYESVVHHCSRALAIASCNSSRALERRALVRRAQAHEELGRFRLAVDDLEAAMASLLEEAREAQPRGQSEGPGKALEGEKAEITKRLERARWTKV 515
            + LRDE++A   AG+ ++G   ARECL +L A Q LL K   A V+ G      TGD   G+   G+ G  GG    HGG     XXXXXXXXX        +GC S++    R  S+A+   GV       +  G  N          +  A E++R+A  A R+AE  CLLR GR AQ+T+ LR+LL E   SV AW+ARG +FL+M   LLAGLHFDRALELD     AA  K + R   +  T+      +D    +P+++G     P + +  HG                             E P+ A             P V   E     G PG             DR+        G S  +++R F+A ACE+YRAGVVLHQE F +SSR +F RVL  +D+A  A  G   A  R+   + G  S       E AG   GC    G    AS    +                  ++  +R+GCHLNIAA+ LL+KT+ ES   HC+RAL +   NS      RALVRRAQAH+ELG FRLAV+DLEAA AS+L   R+   RG+     +AL GE AE+ KRLE ARWTKV
Sbjct:  115 LELRDEIVADAEAGNFHRGTRTARECLVELSAAQKLLGKVV-AVVSPGD-----TGDN-HGSATQGAAGATGGTCCGHGGHDXXXXXXXXXXXXSVDTGHVGQGCASDSGGGVRGKSAAT---GVP-----AQADGRENDEPE-----EIPKALEVLRRAKAACRVAEAACLLRGGRVAQSTEVLRELLFEDSKSVAAWVARGESFLAMNAPLLAGLHFDRALELDKGCVAAATHKQNLRHVSSKGTSAASAACADESHQTPAAAGDTDAAPQKMTIHHGSPTNLSSRVGCGGNVGDQGSLAVAGDVGVETPAPAEDGAIFTTEATEDPAVA-AETPDEEGNPGVAPTAAAXXXXXXDRAAARGVNDDGGSVTEDVRRFVAAACEDYRAGVVLHQEGFLSSSRQRFLRVLEALDKATAAGLGMHAAVARQ---DKGGESAAGQSPSEKAGCGDGCEGLDGKSEEASSGSQVRATSKCGGERGKGGHAVTVVRNMRVGCHLNIAASFLLRKTDLESAAIHCTRALVVEPGNS------RALVRRAQAHQELGYFRLAVEDLEAAEASVLASVRDGHRRGEG---SEALAGELAEVVKRLEHARWTKV 687          
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Match: A0A835YWL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-5
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0
Query:  145 EGSLVGAAEIVRKATIAVRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIARGRAFLSMQNKLLAGLHFDRALELDPDSADAAELKN----SFRLNLDT 243
            E SL+  A   ++  +A++   G   L+ G  A A +ALRD+LL  P    AW AR +AF      LLA LH +RA+ LDPDSA A   K+    S+RL  D+
Sbjct:  202 EHSLLQLAAAAQRDCLALK---GAAQLQLGHLAAAAEALRDVLLLEPARAAAWTARAQAFRLAGVPLLALLHAERAVRLDPDSAAAVLEKDAADASWRLASDS 301          
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Match: A0A484E5C9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5C9_BRELC)

HSP 1 Score: 56.6 bits (135), Expect = 8.770e-5
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0
Query:  162 VRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIARGRAFLSMQNKLLAGLHFDRALELDPDSADAAELKNSFRLNL 241
            V M  GTC L+ GR A AT+A +++L+     V AW+ RG+AF  M   L+A LH++R + LD +     E     +  L
Sbjct:  208 VYMGIGTCDLKQGRLAAATEAFKEVLVRDDEHVMAWLQRGQAFEEMNALLVAMLHYNRIMSLDSEHEKGKEFLERVKSRL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5560.12984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB22_ECTSI4.090e-6737.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWL0_9STRA1.840e-540.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A484E5C9_BRELC8.770e-537.50Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 459..479
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 561..563
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..535
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 536..560
NoneNo IPR availableTMHMMTMhelixcoord: 536..558
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 194..227
e-value: 0.48
score: 19.5
coord: 446..479
e-value: 48.0
score: 9.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 160..193
score: 5.222
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 194..227
score: 9.883
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 151..241
e-value: 3.8E-10
score: 41.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 386..491
e-value: 1.2E-12
score: 49.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 162..232
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 395..474
IPR039663AIP/AIPL1PANTHERPTHR11242ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATEDcoord: 168..235
coord: 387..484
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 160..227
score: 12.932

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5560contigH-elongata_contig5560:5859..8966 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5560.12984.1mRNA_H-elongata_contig5560.12984.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5560 4110..9556 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5560.12984.1 ID=prot_H-elongata_contig5560.12984.1|Name=mRNA_H-elongata_contig5560.12984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=564bp
MALRDEVLASVGAGDLYKGVTKARECLSKLGALQSLLCKACPATVNRGQP
PFTVTGDACRGNGNGGSDGEEGGRRHGGSKAHDHSHSHPSPRAHAHAHSH
EGCCSNTRDVCRMASSASDAGGVGGGDGGEKVVGGNNQHTLGAREGSLVG
AAEIVRKATIAVRMAEGTCLLRTGRAAQATQALRDLLLEHPTSVEAWIAR
GRAFLSMQNKLLAGLHFDRALELDPDSADAAELKNSFRLNLDTAEHGGGD
SDVGETSPSSSGILPNRESHGRKEREWPSAASPCVTEGEEAKMTGEPGDR
SGASQEDELRHFLATACEEYRAGVVLHQEAFFASSRDKFYRVLSLIDEAE
GAAGGPSQAEEREWEPNLGARSLQNPGLMESAGGCTPNTGCASRNPHIIL
NKVRIGCHLNIAAAGLLKKTEYESVVHHCSRALAIASCNSSRALERRALV
RRAQAHEELGRFRLAVDDLEAAMASLLEEAREAQPRGQSEGPGKALEGEK
AEITKRLERARWTKVRRCLGRLRDTPFCFPAPISEAFSFLALYVDCCFLL
LLFVGVGWNVQKI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR039663AIP/AIPL1
IPR013026TPR-contain_dom