mRNA_H-elongata_contig55590.12981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55590.12981.1
Unique NamemRNA_H-elongata_contig55590.12981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55590.12981.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.610e-21
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   31 ILCATADFVEHGQYLFFASVSRRWRKSWGRRPKLTSFLSKHTSVSQLQYAFDCGLPRSIAICNAAGRLGNLDLLRCARAKGCPW 282
            I+    +FV+  QYLFFASVSR WR  WG+RP +T  L+  TSVSQL  +F+CGL R+ A+C     LG LDLLR ARA GCPW
Sbjct:   11 IVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPW 94
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BLAST of mRNA_H-elongata_contig55590.12981.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.490e-18
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   49 DFVEHGQYLFFASVSRRWRKSWGRRPKLTSFLSKHTSVSQLQYAFDCGLPRSIAICNAAGRLGNLDLLRCARAKGCPWG 285
            ++V+H QYLFFA+V R W ++WG RP +T   +  TSVSQL ++F CGL R+  IC  A +LG LDLL+CA   GCP G
Sbjct:   21 EYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCPIG 99
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BLAST of mRNA_H-elongata_contig55590.12981.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.920e-18
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   19 NIDGILCATADFVEHGQYLFFASVSRRWRKSWGRRPKLTSFLSKHTSVSQLQYAFDCGLPRSIA-ICNAAGRLGNLDLLRCARAKGCPW 282
            N+D +L +   FV   Q+LFFA VSR WR++WG RP +TS++++ +SVSQL+Y+F+ GLPR    +C A  RLGNL+LLR AR  GC W
Sbjct:   60 NVD-LLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAW 147
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BLAST of mRNA_H-elongata_contig55590.12981.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.050e-12
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   46 ADFVEHGQYLFFASVSRRWRKSWGRRPKLTSFLSKHTSVSQLQYAFDCGLPRSI---AICNAAGRLGNLDLLRCARAKGCPW 282
            A+FV+  QYLF A VS+ +R++WG R  +T  +   TSV QL Y  + GLP SI    ICNAA R G LDLL+ A+   C W
Sbjct:    5 AEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGW 86
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BLAST of mRNA_H-elongata_contig55590.12981.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.280e-11
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   46 ADFVEHGQYLFFASVSRRWRKSWGRRPKLTSFLSKHTSVSQLQYAFDCGLPRSI---AICNAAGRLGNLDLLRCARAKGCPW 282
            A+FV+  QYLF A V + +R++WG R  +T  +   TSV QL Y  + GLP SI    ICNAA R G LDLL+ A+   C W
Sbjct:    5 AEFVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGW 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55590.12981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMS7_ECTSI4.610e-2157.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWU0_ECTSI5.490e-1853.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE6.920e-1852.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G822_ECTSI7.050e-1248.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3L5_9PHAE2.280e-1147.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55590contigH-elongata_contig55590:1501..2595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1095
Cds size1095
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.1734664-CDS-H-elongata_contig55590:1500..25951622930906.1734664-CDS-H-elongata_contig55590:1500..2595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55590 1501..2595 -
1691679619.3964674-CDS-H-elongata_contig55590:1500..25951691679619.3964674-CDS-H-elongata_contig55590:1500..2595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55590 1501..2595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55590.12981.1prot_H-elongata_contig55590.12981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55590 1501..2595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55590.12981.1

>prot_H-elongata_contig55590.12981.1 ID=prot_H-elongata_contig55590.12981.1|Name=mRNA_H-elongata_contig55590.12981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=365bp
MIHNPLNIDGILCATADFVEHGQYLFFASVSRRWRKSWGRRPKLTSFLSK
HTSVSQLQYAFDCGLPRSIAICNAAGRLGNLDLLRCARAKGCPWGAWTCR
EAAMAGHLDLIRWARRHGCAWNTQMCWGAAEKGHLHVLQWARANGCPWSA
LTCWGAAEGGHLDVLRWARNQGCPWNEHTCSRAAERGHLHVLQWARANGC
PWDEETCWGAAEGGHLDVLRWAKENGCPWDAWTCQGAALGGHLEILRWAR
ENDCPWDEDTCASAAKNGHLDILRWVRQNGCPWGGRTCSRAAARGFLDVL
RWARENGCPWDEATCAAAAENGHLDIVRWARQNGCPWDESTCRRAIERGH
YGVAAWARLNGCPS*
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mRNA from alignment at H-elongata_contig55590:1501..2595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55590.12981.1 ID=mRNA_H-elongata_contig55590.12981.1|Name=mRNA_H-elongata_contig55590.12981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-elongata_contig55590:1501..2595- (Himanthalia elongata Himel1 dioecious)
ATGATCCATAACCCTCTGAACATCGATGGCATCCTCTGCGCCACGGCAGA
CTTCGTGGAGCACGGTCAGTACCTCTTCTTCGCGTCCGTCTCGAGAAGAT
GGAGGAAATCCTGGGGGCGACGCCCTAAGTTGACCAGCTTCCTTTCCAAG
CACACCTCTGTCTCTCAGCTGCAGTACGCCTTCGACTGTGGCCTGCCGCG
TTCCATCGCCATCTGCAACGCCGCGGGCCGTCTCGGAAACCTGGATCTCC
TCCGGTGCGCGCGGGCGAAGGGCTGCCCCTGGGGCGCCTGGACCTGCCGG
GAGGCGGCCATGGCCGGGCATCTGGACCTCATCAGGTGGGCCAGGCGGCA
CGGGTGCGCGTGGAACACGCAGATGTGTTGGGGCGCCGCGGAGAAAGGCC
ATCTGCACGTATTGCAATGGGCAAGGGCAAACGGCTGCCCCTGGTCCGCG
CTGACGTGCTGGGGGGCCGCCGAAGGGGGACACCTCGACGTTCTCCGGTG
GGCACGAAACCAAGGGTGTCCCTGGAACGAGCACACATGCAGCAGGGCCG
CGGAGAGGGGCCACCTGCACGTCCTGCAGTGGGCGAGGGCCAATGGGTGT
CCGTGGGATGAGGAGACTTGTTGGGGGGCGGCCGAGGGTGGTCATCTAGA
CGTCCTACGGTGGGCGAAGGAGAACGGCTGCCCGTGGGACGCGTGGACGT
GCCAAGGGGCTGCTTTGGGAGGGCACCTTGAGATCCTTCGCTGGGCGCGT
GAAAATGATTGCCCATGGGATGAGGACACCTGCGCATCGGCGGCGAAAAA
CGGACACCTGGACATACTTCGGTGGGTGAGGCAGAACGGCTGTCCGTGGG
GCGGCAGGACTTGCTCGAGGGCCGCAGCGAGGGGTTTCTTGGACGTGTTG
CGCTGGGCGAGGGAGAACGGATGCCCCTGGGACGAGGCAACGTGCGCAGC
GGCCGCCGAGAATGGACATCTTGATATTGTACGCTGGGCCAGGCAAAATG
GCTGCCCTTGGGACGAGAGCACGTGTCGGAGGGCGATCGAGCGTGGGCAC
TACGGCGTGGCTGCGTGGGCACGGTTGAATGGATGCCCTAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55590:1501..2595-

>mRNA_H-elongata_contig55590.12981.1 ID=mRNA_H-elongata_contig55590.12981.1|Name=mRNA_H-elongata_contig55590.12981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2190bp|location=Sequence derived from alignment at H-elongata_contig55590:1501..2595- (Himanthalia elongata Himel1 dioecious)
ATGATCCATAACCCTCTGAACATCGATGGCATCCTCTGCGCCACGGCAGA
CTTCGTGGAGCACGGTCAGTACCTCTTCTTCGCGTCCGTCTCGAGAAGAT
GGAGGAAATCCTGGGGGCGACGCCCTAAGTTGACCAGCTTCCTTTCCAAG
CACACCTCTGTCTCTCAGCTGCAGTACGCCTTCGACTGTGGCCTGCCGCG
TTCCATCGCCATCTGCAACGCCGCGGGCCGTCTCGGAAACCTGGATCTCC
TCCGGTGCGCGCGGGCGAAGGGCTGCCCCTGGGGCGCCTGGACCTGCCGG
GAGGCGGCCATGGCCGGGCATCTGGACCTCATCAGGTGGGCCAGGCGGCA
CGGGTGCGCGTGGAACACGCAGATGTGTTGGGGCGCCGCGGAGAAAGGCC
ATCTGCACGTATTGCAATGGGCAAGGGCAAACGGCTGCCCCTGGTCCGCG
CTGACGTGCTGGGGGGCCGCCGAAGGGGGACACCTCGACGTTCTCCGGTG
GGCACGAAACCAAGGGTGTCCCTGGAACGAGCACACATGCAGCAGGGCCG
CGGAGAGGGGCCACCTGCACGTCCTGCAGTGGGCGAGGGCCAATGGGTGT
CCGTGGGATGAGGAGACTTGTTGGGGGGCGGCCGAGGGTGGTCATCTAGA
CGTCCTACGGTGGGCGAAGGAGAACGGCTGCCCGTGGGACGCGTGGACGT
GCCAAGGGGCTGCTTTGGGAGGGCACCTTGAGATCCTTCGCTGGGCGCGT
GAAAATGATTGCCCATGGGATGAGGACACCTGCGCATCGGCGGCGAAAAA
CGGACACCTGGACATACTTCGGTGGGTGAGGCAGAACGGCTGTCCGTGGG
GCGGCAGGACTTGCTCGAGGGCCGCAGCGAGGGGTTTCTTGGACGTGTTG
CGCTGGGCGAGGGAGAACGGATGCCCCTGGGACGAGGCAACGTGCGCAGC
GGCCGCCGAGAATGGACATCTTGATATTGTACGCTGGGCCAGGCAAAATG
GCTGCCCTTGGGACGAGAGCACGTGTCGGAGGGCGATCGAGCGTGGGCAC
TACGGCGTGGCTGCGTGGGCACGGTTGAATGGATGCCCTAGTTGAATGAT
CCATAACCCTCTGAACATCGATGGCATCCTCTGCGCCACGGCAGACTTCG
TGGAGCACGGTCAGTACCTCTTCTTCGCGTCCGTCTCGAGAAGATGGAGG
AAATCCTGGGGGCGACGCCCTAAGTTGACCAGCTTCCTTTCCAAGCACAC
CTCTGTCTCTCAGCTGCAGTACGCCTTCGACTGTGGCCTGCCGCGTTCCA
TCGCCATCTGCAACGCCGCGGGCCGTCTCGGAAACCTGGATCTCCTCCGG
TGCGCGCGGGCGAAGGGCTGCCCCTGGGGCGCCTGGACCTGCCGGGAGGC
GGCCATGGCCGGGCATCTGGACCTCATCAGGTGGGCCAGGCGGCACGGGT
GCGCGTGGAACACGCAGATGTGTTGGGGCGCCGCGGAGAAAGGCCATCTG
CACGTATTGCAATGGGCAAGGGCAAACGGCTGCCCCTGGTCCGCGCTGAC
GTGCTGGGGGGCCGCCGAAGGGGGACACCTCGACGTTCTCCGGTGGGCAC
GAAACCAAGGGTGTCCCTGGAACGAGCACACATGCAGCAGGGCCGCGGAG
AGGGGCCACCTGCACGTCCTGCAGTGGGCGAGGGCCAATGGGTGTCCGTG
GGATGAGGAGACTTGTTGGGGGGCGGCCGAGGGTGGTCATCTAGACGTCC
TACGGTGGGCGAAGGAGAACGGCTGCCCGTGGGACGCGTGGACGTGCCAA
GGGGCTGCTTTGGGAGGGCACCTTGAGATCCTTCGCTGGGCGCGTGAAAA
TGATTGCCCATGGGATGAGGACACCTGCGCATCGGCGGCGAAAAACGGAC
ACCTGGACATACTTCGGTGGGTGAGGCAGAACGGCTGTCCGTGGGGCGGC
AGGACTTGCTCGAGGGCCGCAGCGAGGGGTTTCTTGGACGTGTTGCGCTG
GGCGAGGGAGAACGGATGCCCCTGGGACGAGGCAACGTGCGCAGCGGCCG
CCGAGAATGGACATCTTGATATTGTACGCTGGGCCAGGCAAAATGGCTGC
CCTTGGGACGAGAGCACGTGTCGGAGGGCGATCGAGCGTGGGCACTACGG
CGTGGCTGCGTGGGCACGGTTGAATGGATGCCCTAGTTGA
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