mRNA_H-elongata_contig55585.12980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55585.12980.1
Unique NamemRNA_H-elongata_contig55585.12980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.480e-27
Identity = 54/122 (44.26%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:   79 ILLVMVVSGILYHLRLGWKTLPGVVLISGTRTGSTSPDRPPV---NQFMEYVFVLIMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFLL 435
            ILLV+V     YH  L WK LPG  L  G  +G  +   PP    N++++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT VF+QGVGAYS + LL
Sbjct:   26 ILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLL 147
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BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.250e-25
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:   79 ILLVMVVSGILYHLRLGWKTLPGVVLISGTRTGSTSPDRPPV---NQFMEYVFVLIMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFLL 435
            ILL++V     YH  L WK LPG  L  G  +G  +   PP    N++++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT VF+QGVGAYS + L+
Sbjct:  154 ILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLM 275
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BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.840e-25
Identity = 59/147 (40.14%), Postives = 84/147 (57.14%), Query Frame = 1 
Query:    1 ISKTDGLATLQGSYRSFTTLRLVIIAILLVMVVSGILYHLRLGWKTLPGVVLISG---TRTGSTSPDRPPVNQFMEYVFVLIMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFL 432
            ++K DG           TT   V+  +L++ V    +YH  + W TLPG V+ISG   T   +T+P R   N+F  Y+   ++   +V +       +G+ W Y+Y L+AWV+SLIA FDD  SV+WL +TT  F+QGVGAYS QFL
Sbjct:  100 LTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSG-NRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245
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BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.630e-18
Identity = 51/143 (35.66%), Postives = 81/143 (56.64%), Query Frame = 1 
Query:    1 ISKTDGLA-TLQGSYRSFTTLRLVIIAILLVMVVSGILYHLRLGWKTLPGVVLISGTRTGSTSPDRPPVNQFMEYVFVL--IMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYS 420
            +S+ + L  +LQ   R  TT ++ I  ILL++ V  +L H    WK LPG  LISG         R  V + +  ++V   ++ + + +++   +  + +GW Y   L+AWVLSL A+F  ++SV WLA+TT VF+QG+G  S
Sbjct:  126 LSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGV-----PRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1N8_ECTSI1.480e-2744.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMR1_9PHAE1.250e-2542.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF9_9PHAE1.840e-2540.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF2_ECTSI4.630e-1835.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55585contigH-elongata_contig55585:3322..3756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.0865266-CDS-H-elongata_contig55585:3321..37561622930906.0865266-CDS-H-elongata_contig55585:3321..3756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55585 3322..3756 +
1691679619.388198-CDS-H-elongata_contig55585:3321..37561691679619.388198-CDS-H-elongata_contig55585:3321..3756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55585 3322..3756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55585.12980.1prot_H-elongata_contig55585.12980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55585 3322..3756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55585.12980.1

>prot_H-elongata_contig55585.12980.1 ID=prot_H-elongata_contig55585.12980.1|Name=mRNA_H-elongata_contig55585.12980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
ISKTDGLATLQGSYRSFTTLRLVIIAILLVMVVSGILYHLRLGWKTLPGV
VLISGTRTGSTSPDRPPVNQFMEYVFVLIMSITWVVVFGFITFEKGNGWE
YNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFLL
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mRNA from alignment at H-elongata_contig55585:3322..3756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55585.12980.1 ID=mRNA_H-elongata_contig55585.12980.1|Name=mRNA_H-elongata_contig55585.12980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at H-elongata_contig55585:3322..3756+ (Himanthalia elongata Himel1 dioecious)
ATCTCAAAGACTGACGGCCTTGCGACTCTTCAAGGATCGTATAGATCGTT
TACGACTCTTCGTCTGGTGATTATCGCCATCCTACTCGTAATGGTCGTCT
CTGGGATCCTCTACCATCTCAGACTTGGCTGGAAGACGCTACCCGGCGTA
GTATTGATATCCGGAACTCGCACCGGCAGTACGTCCCCCGATCGGCCACC
GGTGAACCAGTTTATGGAATATGTCTTCGTCCTGATCATGTCCATTACGT
GGGTCGTTGTTTTTGGATTTATCACCTTCGAAAAGGGAAATGGGTGGGAG
TATAACTACATACTTGTGGCGTGGGTATTGTCACTTATTGCTCGTTTCGA
CGACTACGTCAGCGTCATTTGGTTGGCCCTAACGACGGCCGTTTTTATTC
AGGGAGTCGGTGCGTACTCCCTCCAATTTTTGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig55585:3322..3756+

>mRNA_H-elongata_contig55585.12980.1 ID=mRNA_H-elongata_contig55585.12980.1|Name=mRNA_H-elongata_contig55585.12980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig55585:3322..3756+ (Himanthalia elongata Himel1 dioecious)
ATCTCAAAGACTGACGGCCTTGCGACTCTTCAAGGATCGTATAGATCGTT
TACGACTCTTCGTCTGGTGATTATCGCCATCCTACTCGTAATGGTCGTCT
CTGGGATCCTCTACCATCTCAGACTTGGCTGGAAGACGCTACCCGGCGTA
GTATTGATATCCGGAACTCGCACCGGCAGTACGTCCCCCGATCGGCCACC
GGTGAACCAGTTTATGGAATATGTCTTCGTCCTGATCATGTCCATTACGT
GGGTCGTTGTTTTTGGATTTATCACCTTCGAAAAGGGAAATGGGTGGGAG
TATAACTACATACTTGTGGCGTGGGTATTGTCACTTATTGCTCGTTTCGA
CGACTACGTCAGCGTCATTTGGTTGGCCCTAACGACGGCCGTTTTTATTC
AGGGAGTCGGTGCGTACTCCCTCCAATTTTTGTTAATCTCAAAGACTGAC
GGCCTTGCGACTCTTCAAGGATCGTATAGATCGTTTACGACTCTTCGTCT
GGTGATTATCGCCATCCTACTCGTAATGGTCGTCTCTGGGATCCTCTACC
ATCTCAGACTTGGCTGGAAGACGCTACCCGGCGTAGTATTGATATCCGGA
ACTCGCACCGGCAGTACGTCCCCCGATCGGCCACCGGTGAACCAGTTTAT
GGAATATGTCTTCGTCCTGATCATGTCCATTACGTGGGTCGTTGTTTTTG
GATTTATCACCTTCGAAAAGGGAAATGGGTGGGAGTATAACTACATACTT
GTGGCGTGGGTATTGTCACTTATTGCTCGTTTCGACGACTACGTCAGCGT
CATTTGGTTGGCCCTAACGACGGCCGTTTTTATTCAGGGAGTCGGTGCGT
ACTCCCTCCAATTTTTGTTA
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