prot_H-elongata_contig55585.12980.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55585.12980.1
Unique Nameprot_H-elongata_contig55585.12980.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.480e-27
Identity = 54/122 (44.26%), Postives = 81/122 (66.39%), Query Frame = 0
Query:   27 ILLVMVVSGILYHLRLGWKTLPGVVLISGTRTGSTSPDRPPV---NQFMEYVFVLIMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFLL 145
            ILLV+V     YH  L WK LPG  L  G  +G  +   PP    N++++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT VF+QGVGAYS + LL
Sbjct:   26 ILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLL 147          
BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.250e-25
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 0
Query:   27 ILLVMVVSGILYHLRLGWKTLPGVVLISGTRTGSTSPDRPPV---NQFMEYVFVLIMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFLL 145
            ILL++V     YH  L WK LPG  L  G  +G  +   PP    N++++Y+  + + + ++V+F    + +G+ W+Y+Y+L+AW++SLIA FDDY+SV WL +TT VF+QGVGAYS + L+
Sbjct:  154 ILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLM 275          
BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.840e-25
Identity = 59/147 (40.14%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    1 ISKTDGLATLQGSYRSFTTLRLVIIAILLVMVVSGILYHLRLGWKTLPGVVLISG---TRTGSTSPDRPPVNQFMEYVFVLIMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFL 144
            ++K DG           TT   V+  +L++ V    +YH  + W TLPG V+ISG   T   +T+P R   N+F  Y+   ++   +V +       +G+ W Y+Y L+AWV+SLIA FDD  SV+WL +TT  F+QGVGAYS QFL
Sbjct:  100 LTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSG-NRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245          
BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.630e-18
Identity = 51/143 (35.66%), Postives = 81/143 (56.64%), Query Frame = 0
Query:    1 ISKTDGLA-TLQGSYRSFTTLRLVIIAILLVMVVSGILYHLRLGWKTLPGVVLISGTRTGSTSPDRPPVNQFMEYVFVL--IMSITWVVVFGFITFEKGNGWEYNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYS 140
            +S+ + L  +LQ   R  TT ++ I  ILL++ V  +L H    WK LPG  LISG         R  V + +  ++V   ++ + + +++   +  + +GW Y   L+AWVLSL A+F  ++SV WLA+TT VF+QG+G  S
Sbjct:  126 LSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGV-----PRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55585.12980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1N8_ECTSI1.480e-2744.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMR1_9PHAE1.250e-2542.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF9_9PHAE1.840e-2540.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF2_ECTSI4.630e-1835.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..141
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..73
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..121
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 94..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 122..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55585contigH-elongata_contig55585:3322..3756 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55585.12980.1mRNA_H-elongata_contig55585.12980.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55585 3322..3756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55585.12980.1 ID=prot_H-elongata_contig55585.12980.1|Name=mRNA_H-elongata_contig55585.12980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
ISKTDGLATLQGSYRSFTTLRLVIIAILLVMVVSGILYHLRLGWKTLPGV
VLISGTRTGSTSPDRPPVNQFMEYVFVLIMSITWVVVFGFITFEKGNGWE
YNYILVAWVLSLIARFDDYVSVIWLALTTAVFIQGVGAYSLQFLL
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