mRNA_H-elongata_contig5551.12967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5551.12967.1
Unique NamemRNA_H-elongata_contig5551.12967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5551.12967.1 vs. uniprot
Match: A0A6H5KA06_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA06_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.940e-43
Identity = 98/246 (39.84%), Postives = 145/246 (58.94%), Query Frame = 1 
Query:  289 AKTTPTVMAVGKSGAGKSTLCNYLLYGKPQPANGFRVSPGYDPVTFECQTMQVEKTPPPKRLIDALSCHTYSSGPLRTIDTPGIPDPNGRTLEFYDDIVRTARDATVLNAVIIVVNYTGDRDQIKREFDLYGILIKQFSKLPCYKILLCRHKMPPDLEQNQEDAEMKAVEDWTKELKKRAEIEETQTAFLRENDLMSTQIFSLRETLCNMPQTSISESNMRTYSELRYRVKTLTDEEGHRVEALQK 1026
            AK  PTVM +GKSGAGKSTL NY LY  P+  +GF+   G  PVT +C+   VE+TP P  +     C     GPL  IDTPGIPDP GRT EFYD+IV T R    LNA++ ++NY  DR Q+  +F  + IL++QF+ L C  + +CR    PDL+ ++++ E + V+ W K L    ++E +    + +++     +F  R+ L  +P T I+E N+RT+ ++   ++ L D +  R E  +K
Sbjct:   12 AKQPPTVMVLGKSGAGKSTLSNYFLYNSPRHDDGFKAGKGGTPVTVKCEAKSVEETPAP--VGTGKPC-----GPLTMIDTPGIPDPRGRTPEFYDEIVLTMRRIGGLNALVFLINYCDDRAQVLEDFKTHRILLEQFNGLVCPTVFICRFSSNPDLQDSEKEVERETVQKWVKLLMAEVKLETSCLILVNQSEPQREPLFKARQNLAELPFTPITEMNIRTWDKVGKSMRRLVDGDTRREELEEK 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5551.12967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA06_9PHAE3.940e-4339.84G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5551contigH-elongata_contig5551:8442..11330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2217
Cds size1320
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5551.12967.1prot_H-elongata_contig5551.12967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5551 9216..11207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.6430836-UTR-H-elongata_contig5551:8441..92151622930904.6430836-UTR-H-elongata_contig5551:8441..9215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5551 8442..9215 -
1691679618.837504-UTR-H-elongata_contig5551:8441..92151691679618.837504-UTR-H-elongata_contig5551:8441..9215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5551 8442..9215 -
1622930904.6925619-UTR-H-elongata_contig5551:11207..113301622930904.6925619-UTR-H-elongata_contig5551:11207..11330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5551 11208..11330 -
1691679618.869817-UTR-H-elongata_contig5551:11207..113301691679618.869817-UTR-H-elongata_contig5551:11207..11330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5551 11208..11330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.6615562-CDS-H-elongata_contig5551:9215..104281622930904.6615562-CDS-H-elongata_contig5551:9215..10428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5551 9216..10428 -
1691679618.847696-CDS-H-elongata_contig5551:9215..104281691679618.847696-CDS-H-elongata_contig5551:9215..10428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5551 9216..10428 -
1622930904.6784809-CDS-H-elongata_contig5551:11100..112071622930904.6784809-CDS-H-elongata_contig5551:11100..11207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5551 11101..11207 -
1691679618.8581462-CDS-H-elongata_contig5551:11100..112071691679618.8581462-CDS-H-elongata_contig5551:11100..11207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5551 11101..11207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5551.12967.1

>prot_H-elongata_contig5551.12967.1 ID=prot_H-elongata_contig5551.12967.1|Name=mRNA_H-elongata_contig5551.12967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=440bp
MSPSPPPMSPIDFGRQTPRYTQRAYRGVFTLTTRRRYFSTMTQTVNREPM
SSNGSAKTTPTVMAVGKSGAGKSTLCNYLLYGKPQPANGFRVSPGYDPVT
FECQTMQVEKTPPPKRLIDALSCHTYSSGPLRTIDTPGIPDPNGRTLEFY
DDIVRTARDATVLNAVIIVVNYTGDRDQIKREFDLYGILIKQFSKLPCYK
ILLCRHKMPPDLEQNQEDAEMKAVEDWTKELKKRAEIEETQTAFLRENDL
MSTQIFSLRETLCNMPQTSISESNMRTYSELRYRVKTLTDEEGHRVEALQ
KHMAELRTERNQLQSQNAELDVKVLNTRKHSNIISALVIGGGMAIDICTG
FVSFGSVTAGSIAAGRVVNSASKAYACIFETYIQTNKNRIEGIGTNIADI
EYELKTDNRNEEALAKDQAELRQLEYIAHLEHVWCPVNY*
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mRNA from alignment at H-elongata_contig5551:8442..11330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5551.12967.1 ID=mRNA_H-elongata_contig5551.12967.1|Name=mRNA_H-elongata_contig5551.12967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2889bp|location=Sequence derived from alignment at H-elongata_contig5551:8442..11330- (Himanthalia elongata Himel1 dioecious)
TTCGGAATATGGACCAGGGGGGAGTTTACCTGGGGACGGTCTCGCGGTGA
CTTTGAACTGGGGGAACAGGAGCTGTCTCGCGAGGCAGATGAAGATGAGG
AGGAGAAGGAAGAGGATGACGGGATGTCACCTTCTCCGCCTCCGATGTCG
CCCATTGATTTCGGGAGACAAACACCTCGTTACACTCAAAGGGCCTACAG
AGGAGTGTTTACTTTGACGACGAGGAGGAGGTGAATTATTTCTTTTATAG
GAGCTACGGCTACCAAAATGTGAATCGTTGCCGCTTCGATATCTTGGAGC
GAACGCATCATTACTATTTGAAAAAACATGAACTTGTTCCAACCCTCCGA
ACATCCACACCTTCTTAGCACCGTGGAAGGTGTTATGAAGGGGACCAACT
ATCGTCAGGGTTGAATGTGCACATTCCTACCTTTAAGCACAAAGCCGTCA
CATAATGAGATAATTCGTGATTCATCGGGTCAGTTGCTCGAATCATCCTT
TCGTTCAAGCCAAGAGACGAGCCAGCTTCCAGGCTTTTCGTTGCTTGCGA
AGAGTGTGCATTGCTGTATACCGCTCGTGGAGTCGCATCCGTGAGGATCG
TCGTTACAGCAGTACACGCGGCCAGCACATACAGCCCCCTGGAAACAGTT
CTACCGCAGGTCCATACCTAGCAGGAGTGCAGAGTGCAAACCGTTTTCCA
CATCATCTATGTTGGGTTATCCGGCTGACATTTCCGCGTATTATGCGGTT
TCTCGATAAGACACGTTTTTTTTATTTTTTGGCCTAATCTGCTTTGATTT
TGATTTTTATAAACCGATAACAGATTTTTTTCTGGAAACACAATAAGACC
CGGCTTAACCTCTCAAGTTTCAAAATCCCCGCCTGTCCCATGCATTTCTC
AGGTATTTTTCCACCATGACGCAAACCGTGAACCGAGAACCGATGTCATC
CAACGGAAGTGCGAAAACGACACCTACCGTCATGGCCGTTGGGAAGTCTG
GCGCGGGCAAGAGTACCCTATGCAACTACCTATTATACGGAAAACCGCAG
CCAGCTAACGGTTTCAGAGTCTCCCCAGGTTACGACCCGGTGACATTCGA
ATGCCAGACAATGCAGGTCGAGAAAACCCCTCCTCCAAAGCGTCTTATAG
ACGCCTTGAGCTGTCATACGTACTCTTCTGGGCCGCTGAGAACAATCGAC
ACCCCGGGAATACCGGATCCCAATGGAAGGACTCTAGAGTTTTACGACGA
TATCGTACGCACGGCACGAGATGCTACTGTACTGAACGCAGTCATCATAG
TAGTTAACTATACCGGCGACCGGGATCAAATCAAGAGAGAGTTCGACTTG
TATGGCATCCTCATTAAGCAGTTCTCAAAGCTCCCGTGCTACAAGATTTT
GCTGTGCCGGCACAAGATGCCGCCAGACCTGGAACAGAACCAGGAAGACG
CCGAAATGAAAGCGGTTGAAGACTGGACAAAAGAACTAAAAAAACGGGCG
GAGATCGAAGAAACCCAAACGGCCTTTCTGAGAGAAAATGATTTGATGTC
TACACAAATATTCAGCCTAAGGGAAACTCTCTGCAACATGCCACAGACAT
CTATCTCAGAGTCAAATATGCGGACATATTCCGAGCTAAGATACAGGGTG
AAGACCTTGACCGATGAGGAAGGCCATCGCGTAGAGGCACTCCAGAAACA
TATGGCTGAACTCCGCACGGAACGCAACCAGCTACAGTCTCAAAACGCCG
AGCTTGATGTGAAAGTGTTAAATACCAGAAAACACAGCAACATAATAAGC
GCACTAGTTATCGGGGGAGGGATGGCTATCGATATATGTACAGGGTTCGT
ATCCTTCGGCTCCGTTACTGCTGGTAGTATCGCGGCTGGAAGAGTCGTTA
ATTCTGCTTCGAAGGCCTACGCTTGCATCTTCGAGACATATATCCAGACG
AACAAGAACAGAATCGAAGGCATCGGCACAAACATAGCTGATATCGAGTA
TGAATTGAAAACCGACAACCGGAACGAGGAGGCGCTCGCAAAAGATCAAG
CCGAGCTCAGGCAGCTGGAGTATATAGCACATCTAGAGCACGTTTGGTGC
CCCGTGAATTACTAAGCACTGTGCTGAAACTGTGCTGGGTCATCTTTTTC
ACGAAATGAGTACAGAAATTCACATAGGCTTCCCTCTCCATTGATACCTT
ACCGTGTCTATATACTATGCGTGATCAAAATGGTGCGTATGTGTCGGTAC
AAAATATTAGTCACGACTAATATAGTGAGTCTTTCGCTTTCGTTCACGCT
ATAGCGTTCCTGCGATCATTTATCAGCGTTTGAAGCATAATGTATATTAT
TTGCCAAAGCCAGTCGAGGGAAAATATGCTGGGACAGGAGCTGGTATTGG
AAATGGACGGTTTATATTATAAATGCTAATTGTTGACTACCCCCTCCGAA
TCCTCCAGTCAACGTGTGTACATTAATTATTGGATAAGTTGGATGGGGGA
TGGACGTAGAGTCGAGTACTTCACCTCATCATTGTTTTCTCGCCGTCTAT
TTGACTGTCTTTGTCATAGCTACCTACGTGCCATATAATATGTATTTTCT
CCATCACTACATTTTTTTCTTCTGTAAAATAGTGGACATATAGTCTTTAT
TTTGCTCTCTCCTCCATATTTGCTACGCTACTGACCACGAGCGGTCTGAG
ACGCGAAACGTGTCAATCCAGGTCAACCAACACGAAATGGAATACAGTTC
GATTGATCTTTCAGCTAAAGAACTACGATGAAACGACTAGACCGTCATAC
TAAACGTAGACAAGGTACGTAGCAGTCAGCGAGAAACAACAACGTAGTGA
TATCGGGACAGTTAAAGCAAGACGATGCCGTTGTCTACC
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Coding sequence (CDS) from alignment at H-elongata_contig5551:8442..11330-

>mRNA_H-elongata_contig5551.12967.1 ID=mRNA_H-elongata_contig5551.12967.1|Name=mRNA_H-elongata_contig5551.12967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2640bp|location=Sequence derived from alignment at H-elongata_contig5551:8442..11330- (Himanthalia elongata Himel1 dioecious)
ATGTCACCTTCTCCGCCTCCGATGTCGCCCATTGATTTCGGGAGACAAAC
ACCTCGTTACACTCAAAGGGCCTACAGAGGAGTGTTTACTTTGACGACGA
GGAGGAGATGTCACCTTCTCCGCCTCCGATGTCGCCCATTGATTTCGGGA
GACAAACACCTCGTTACACTCAAAGGGCCTACAGAGGAGTGTTTACTTTG
ACGACGAGGAGGAGGTATTTTTCCACCATGACGCAAACCGTGAACCGAGA
ACCGATGTCATCCAACGGAAGTGCGAAAACGACACCTACCGTCATGGCCG
TTGGGAAGTCTGGCGCGGGCAAGAGTACCCTATGCAACTACCTATTATAC
GGAAAACCGCAGCCAGCTAACGGTTTCAGAGTCTCCCCAGGTTACGACCC
GGTGACATTCGAATGCCAGACAATGCAGGTCGAGAAAACCCCTCCTCCAA
AGCGTCTTATAGACGCCTTGAGCTGTCATACGTACTCTTCTGGGCCGCTG
AGAACAATCGACACCCCGGGAATACCGGATCCCAATGGAAGGACTCTAGA
GTTTTACGACGATATCGTACGCACGGCACGAGATGCTACTGTACTGAACG
CAGTCATCATAGTAGTTAACTATACCGGCGACCGGGATCAAATCAAGAGA
GAGTTCGACTTGTATGGCATCCTCATTAAGCAGTTCTCAAAGCTCCCGTG
CTACAAGATTTTGCTGTGCCGGCACAAGATGCCGCCAGACCTGGAACAGA
ACCAGGAAGACGCCGAAATGAAAGCGGTTGAAGACTGGACAAAAGAACTA
AAAAAACGGGCGGAGATCGAAGAAACCCAAACGGCCTTTCTGAGAGAAAA
TGATTTGATGTCTACACAAATATTCAGCCTAAGGGAAACTCTCTGCAACA
TGCCACAGACATCTATCTCAGAGTCAAATATGCGGACATATTCCGAGCTA
AGATACAGGGTGAAGACCTTGACCGATGAGGAAGGCCATCGCGTAGAGGC
ACTCCAGAAACATATGGCTGAACTCCGCACGGAACGCAACCAGCTACAGT
CTCAAAACGCCGAGCTTGATGTGAAAGTGTTAAATACCAGAAAACACAGC
AACATAATAAGCGCACTAGTTATCGGGGGAGGGATGGCTATCGATATATG
TACAGGGTTCGTATCCTTCGGCTCCGTTACTGCTGGTAGTATCGCGGCTG
GAAGAGTCGTTAATTCTGCTTCGAAGGCCTACGCTTGCATCTTCGAGACA
TATATCCAGACGAACAAGAACAGAATCGAAGGCATCGGCACAAACATAGC
TGATATCGAGTATGAATTGAAAACCGACAACCGGAACGAGGAGGCGCTCG
CAAAAGATCAAGCCGAGCTCAGGCAGCTGGAGTATATAGCACATCTAGAG
CACGTTTGGTGCCCCGTGAATTACTAAGTATTTTTCCACCATGACGCAAA
CCGTGAACCGAGAACCGATGTCATCCAACGGAAGTGCGAAAACGACACCT
ACCGTCATGGCCGTTGGGAAGTCTGGCGCGGGCAAGAGTACCCTATGCAA
CTACCTATTATACGGAAAACCGCAGCCAGCTAACGGTTTCAGAGTCTCCC
CAGGTTACGACCCGGTGACATTCGAATGCCAGACAATGCAGGTCGAGAAA
ACCCCTCCTCCAAAGCGTCTTATAGACGCCTTGAGCTGTCATACGTACTC
TTCTGGGCCGCTGAGAACAATCGACACCCCGGGAATACCGGATCCCAATG
GAAGGACTCTAGAGTTTTACGACGATATCGTACGCACGGCACGAGATGCT
ACTGTACTGAACGCAGTCATCATAGTAGTTAACTATACCGGCGACCGGGA
TCAAATCAAGAGAGAGTTCGACTTGTATGGCATCCTCATTAAGCAGTTCT
CAAAGCTCCCGTGCTACAAGATTTTGCTGTGCCGGCACAAGATGCCGCCA
GACCTGGAACAGAACCAGGAAGACGCCGAAATGAAAGCGGTTGAAGACTG
GACAAAAGAACTAAAAAAACGGGCGGAGATCGAAGAAACCCAAACGGCCT
TTCTGAGAGAAAATGATTTGATGTCTACACAAATATTCAGCCTAAGGGAA
ACTCTCTGCAACATGCCACAGACATCTATCTCAGAGTCAAATATGCGGAC
ATATTCCGAGCTAAGATACAGGGTGAAGACCTTGACCGATGAGGAAGGCC
ATCGCGTAGAGGCACTCCAGAAACATATGGCTGAACTCCGCACGGAACGC
AACCAGCTACAGTCTCAAAACGCCGAGCTTGATGTGAAAGTGTTAAATAC
CAGAAAACACAGCAACATAATAAGCGCACTAGTTATCGGGGGAGGGATGG
CTATCGATATATGTACAGGGTTCGTATCCTTCGGCTCCGTTACTGCTGGT
AGTATCGCGGCTGGAAGAGTCGTTAATTCTGCTTCGAAGGCCTACGCTTG
CATCTTCGAGACATATATCCAGACGAACAAGAACAGAATCGAAGGCATCG
GCACAAACATAGCTGATATCGAGTATGAATTGAAAACCGACAACCGGAAC
GAGGAGGCGCTCGCAAAAGATCAAGCCGAGCTCAGGCAGCTGGAGTATAT
AGCACATCTAGAGCACGTTTGGTGCCCCGTGAATTACTAA
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