prot_H-elongata_contig5551.12967.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5551.12967.1
Unique Nameprot_H-elongata_contig5551.12967.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length440
Homology
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BLAST of mRNA_H-elongata_contig5551.12967.1 vs. uniprot
Match: A0A6H5KA06_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA06_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.610e-45
Identity = 98/246 (39.84%), Postives = 145/246 (58.94%), Query Frame = 0 
Query:   56 AKTTPTVMAVGKSGAGKSTLCNYLLYGKPQPANGFRVSPGYDPVTFECQTMQVEKTPPPKRLIDALSCHTYSSGPLRTIDTPGIPDPNGRTLEFYDDIVRTARDATVLNAVIIVVNYTGDRDQIKREFDLYGILIKQFSKLPCYKILLCRHKMPPDLEQNQEDAEMKAVEDWTKELKKRAEIEETQTAFLRENDLMSTQIFSLRETLCNMPQTSISESNMRTYSELRYRVKTLTDEEGHRVEALQK 301
            AK  PTVM +GKSGAGKSTL NY LY  P+  +GF+   G  PVT +C+   VE+TP P  +     C     GPL  IDTPGIPDP GRT EFYD+IV T R    LNA++ ++NY  DR Q+  +F  + IL++QF+ L C  + +CR    PDL+ ++++ E + V+ W K L    ++E +    + +++     +F  R+ L  +P T I+E N+RT+ ++   ++ L D +  R E  +K
Sbjct:   12 AKQPPTVMVLGKSGAGKSTLSNYFLYNSPRHDDGFKAGKGGTPVTVKCEAKSVEETPAP--VGTGKPC-----GPLTMIDTPGIPDPRGRTPEFYDEIVLTMRRIGGLNALVFLINYCDDRAQVLEDFKTHRILLEQFNGLVCPTVFICRFSSNPDLQDSEKEVERETVQKWVKLLMAEVKLETSCLILVNQSEPQREPLFKARQNLAELPFTPITEMNIRTWDKVGKSMRRLVDGDTRREELEEK 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5551.12967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA06_9PHAE2.610e-4539.84G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 296..323
NoneNo IPR availableGENE3D3.40.50.300coord: 38..301
e-value: 1.5E-13
score: 52.5
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 62..182
e-value: 2.6E-6
score: 27.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 53..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5551contigH-elongata_contig5551:9216..11207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5551.12967.1mRNA_H-elongata_contig5551.12967.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5551 8442..11330 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5551.12967.1 ID=prot_H-elongata_contig5551.12967.1|Name=mRNA_H-elongata_contig5551.12967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=440bp
MSPSPPPMSPIDFGRQTPRYTQRAYRGVFTLTTRRRYFSTMTQTVNREPM
SSNGSAKTTPTVMAVGKSGAGKSTLCNYLLYGKPQPANGFRVSPGYDPVT
FECQTMQVEKTPPPKRLIDALSCHTYSSGPLRTIDTPGIPDPNGRTLEFY
DDIVRTARDATVLNAVIIVVNYTGDRDQIKREFDLYGILIKQFSKLPCYK
ILLCRHKMPPDLEQNQEDAEMKAVEDWTKELKKRAEIEETQTAFLRENDL
MSTQIFSLRETLCNMPQTSISESNMRTYSELRYRVKTLTDEEGHRVEALQ
KHMAELRTERNQLQSQNAELDVKVLNTRKHSNIISALVIGGGMAIDICTG
FVSFGSVTAGSIAAGRVVNSASKAYACIFETYIQTNKNRIEGIGTNIADI
EYELKTDNRNEEALAKDQAELRQLEYIAHLEHVWCPVNY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase