mRNA_H-elongata_contig55450.12961.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55450.12961.1
Unique NamemRNA_H-elongata_contig55450.12961.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.640e-18
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 KDKVDSLMKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIGIQ 177
            KDKVDSLMK GKLFVVDH L+  +  +P+  +PRYLA  +ALFE VDD+ LP+KP+GIQ
Sbjct:  189 KDKVDSLMKAGKLFVVDHHLIKDVETSPLEGIPRYLAPSVALFEAVDDELLPLKPLGIQ 247
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BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.080e-16
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 KDKVDSLMKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIGIQ 177
            K+KVDSLMK GKLFVVD  ++  +   P+ DVPRYLA  +ALFE VDD+ LP+KP+GIQ
Sbjct:  261 KNKVDSLMKAGKLFVVDQHIVKEVQTAPLEDVPRYLAPCVALFEAVDDELLPLKPVGIQ 319
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BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.210e-14
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 KDKVDSLMKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIGIQ 177
            K KVDSLM +GKLFVVDHELL G        V RYL   +ALFEV+DDD LPI+PIGIQ
Sbjct:  245 KSKVDSLMDEGKLFVVDHELLKG--------VERYLTPSVALFEVIDDDLLPIRPIGIQ 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KD72_9PHAE9.640e-1864.41Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A6H5K920_9PHAE4.080e-1662.71Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
D8LBX4_ECTSI3.210e-1466.10Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55450contigH-elongata_contig55450:1173..1741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog2880.D7G113
KEGG rclassRC00561,RC00839,RC02139
KEGG koko:K00461
KEGG ReactionR01595,R03058,R08527
KEGG Pathwayko00590,ko01100,ko04664,ko04726,ko04913,ko05145,map00590,map01100,map04664,map04726,map04913,map05145
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGs28IFU@1,2QQSP@2759
EC1.13.11.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size181
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55450.12961.1prot_H-elongata_contig55450.12961.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55450 1173..1720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.9221075-CDS-H-elongata_contig55450:1172..12861622930903.9221075-CDS-H-elongata_contig55450:1172..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55450 1173..1286 -
1691679618.5668378-CDS-H-elongata_contig55450:1172..12861691679618.5668378-CDS-H-elongata_contig55450:1172..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55450 1173..1286 -
1622930903.9365811-CDS-H-elongata_contig55450:1675..17201622930903.9365811-CDS-H-elongata_contig55450:1675..1720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55450 1676..1720 -
1691679618.5780694-CDS-H-elongata_contig55450:1675..17201691679618.5780694-CDS-H-elongata_contig55450:1675..1720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55450 1676..1720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.9513936-UTR-H-elongata_contig55450:1720..17411622930903.9513936-UTR-H-elongata_contig55450:1720..1741Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55450 1721..1741 -
1691679618.5884924-UTR-H-elongata_contig55450:1720..17411691679618.5884924-UTR-H-elongata_contig55450:1720..1741Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55450 1721..1741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55450.12961.1

>prot_H-elongata_contig55450.12961.1 ID=prot_H-elongata_contig55450.12961.1|Name=mRNA_H-elongata_contig55450.12961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIG
IQV
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mRNA from alignment at H-elongata_contig55450:1173..1741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55450.12961.1 ID=mRNA_H-elongata_contig55450.12961.1|Name=mRNA_H-elongata_contig55450.12961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=569bp|location=Sequence derived from alignment at H-elongata_contig55450:1173..1741- (Himanthalia elongata Himel1 dioecious)
AAGGACAAGGTGGACTCGCTGATGAAGGACGGGAAGCTCTTCGTCGTCGA
TCACGAGCTCCTCGCGGTGAGATTTACTTTAGTATTCATACCTCTTATCG
AACGTAAGGGTACCCTGTATGTTGTTGTTGTTGTTGGTCACACTTTCAAC
AGAATAAGATCAACCGGATTTGGTTGACTTCTGCTCGTGGTCAGCTGAAC
AGGAAAAATATTTTCCCCCTGTCCACGTTCACGCCTGATAATTTGGTCTT
GCGAGACGGGTTCAGCAGTTCCGTCCCGCGTCGGCCTGCTCATTCTCCCA
ACCCAGGATGAATCTGATGCTTACTCCCGGGATCCTCTTGATCTCTTTAA
AATCTTGACAAGCTCTACGGTTAATCGATCGAAACTCCGCTGGCACGGCC
CCGCAATAAACTAGCGTGTCTCCTTCTACCATATTCCCTCACCCGCCTGC
TCCAGGGCATGCCTGCGACTCCCATTAACGACGTTCCACGATACCTGGCG
GTCGGCATCGCCCTGTTCGAGGTCGTGGATGACGATTTCCTCCCCATCAA
GCCGATCGGGATCCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig55450:1173..1741-

>mRNA_H-elongata_contig55450.12961.1 ID=mRNA_H-elongata_contig55450.12961.1|Name=mRNA_H-elongata_contig55450.12961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig55450:1173..1741- (Himanthalia elongata Himel1 dioecious)
ATGAAGGACGGGAAGCTCTTCGTCGTCGATCACGAGCTCCTCGCGATGAA
GGACGGGAAGCTCTTCGTCGTCGATCACGAGCTCCTCGCGGGCATGCCTG
CGACTCCCATTAACGACGTTCCACGATACCTGGCGGTCGGCATCGCCCTG
TTCGAGGTCGTGGATGACGATTTCCTCCCCATCAAGCCGATCGGGATCCA
GGTGGGCATGCCTGCGACTCCCATTAACGACGTTCCACGATACCTGGCGG
TCGGCATCGCCCTGTTCGAGGTCGTGGATGACGATTTCCTCCCCATCAAG
CCGATCGGGATCCAGGTG
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